Sequence of DPV Potato mop-top virus

Potato mop top virus partial CP gene for coat protein, genomic RNA, clone NB211

ACC No: AM491619

Dated: 2007-02-19 | Length: 524 | CRC: 65995019

                
ID   AM491619; SV 1; linear; genomic RNA; STD; VRL; 524 BP.
XX
AC   AM491619;
XX
DT   19-FEB-2007 (Rel. 90, Created)
DT   19-FEB-2007 (Rel. 90, Last updated, Version 1)
XX
DE   Potato mop top virus partial CP gene for coat protein, genomic RNA, clone
DE   NB211
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KW   coat protein; CP gene.
XX
OS   Potato mop-top virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Pomovirus.
XX
RN   [1]
RP   1-524
RA   Chiemsombat P.;
RT   ;
RL   Submitted (07-FEB-2007) to the EMBL/GenBank/DDBJ databases.
RL   Chiemsombat P., Plant Pathology, Kasetsart University, 1 Malaiman Road,
RL   Khamphaengsaen District, Nakhon Pathom 73140, THAILAND.
XX
RN   [2]
RA   Chiemsombat P., Larprom A., Maneechote P., Pongsapich P.;
RT   "Development of the diagnosis of potato mop top virus in potato";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .524
FT                   /organism="Potato mop-top virus"
FT                   /specific_host="Solanum tuberosum"
FT                   /lab_host="Nicotiana benthamiana"
FT                   /isolate="Nb7"
FT                   /mol_type="genomic RNA"
FT                   /isolation_source="laboratory host root"
FT                   /clone="NB211"
FT                   /virion
FT                   /PCR_primers="fwd_seq: ggatccatggctgaaaacagaggtga, rev_seq:
FT                   gtcgacctatgcaccagcccagcgtaacc"
FT                   /db_xref="taxon:37128"
FT   CDS             1. .>524
FT                   /transl_table=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /protein_id="CAM33459.1"
FT                   /translation="MAENRGERRAAVENRYDSWGHEQAMKAAVRKFISYDQFSAQLRNW
FT                   REARLNIIEHATSVLSQVSNLGRTHFYSRTERFGGSSLVGDKLYVCLNETRMKTALNNI
FT                   IVALQTVNGEGRARRLGPREASANTGGEDSALNVAHQLAEVDDLLTDESFLREAVFTQD
FT                   KYELVNGLRWA"
XX
SQ   Sequence 524 BP; 156 A; 93 C; 148 G; 127 T; 0 other;

am491619 Length: 524  19-FEB-2007  Type: N  Check: 408  ..

       1  atggctgaaa acagaggtga gcgaagagca gccgtcgaga atagatatga
      51  ctcttggggc catgagcagg ccatgaaggc tgccgtgagg aagtttattt
     101  cttacgatca attctcagct cagttaagaa actggcgcga agctaggtta
     151  aacataattg aacatgccac tagcgtgttg agccaggtgt ctaatttagg
     201  tagaactcat ttctacagta gaaccgaacg ctttggtgga agttcacttg
     251  ttggtgataa attgtacgta tgtctgaatg aaaccagaat gaaaaccgcg
     301  ttgaataata taattgtagc gttgcagaca gtgaacggcg aagggcgggc
     351  aagacgatta ggtccgagag aagcttccgc gaacaccggc ggggaggata
     401  gcgctctgaa tgtggcacat caactcgcag aggtggacga tttattaact
     451  gatgaaagtt ttttaagaga agctgttttt actcaggaca aatatgagct
     501  cgtgaacggg ttacgctggg ctaa