Sequence of DPV Lettuce virus X
Lettuce virus X complete genome
ACC No: AM745758
Dated: 2008-10-23 | Length: 7212 | CRC: -1287901472
ID AM745758; SV 1; linear; genomic RNA; STD; VRL; 7212 BP.
XX
AC AM745758;
XX
DT 05-JUN-2008 (Rel. 96, Created)
DT 23-OCT-2008 (Rel. 97, Last updated, Version 2)
XX
DE Lettuce virus X complete genome
XX
KW coat protein; complete genome; CP gene; RdRp gene;
KW RNA-dependent RNA polymerase; TGBp1 gene; TGBp2 gene; TGBp3 gene;
KW triple-gene-block protein 1; triple-gene-block-protein 2;
KW triple-gene-block-protein 3.
XX
OS Lettuce virus X
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC Potexvirus; unclassified Potexvirus.
XX
RN [1]
RP 1-7212
RA Winter S.;
RT ;
RL Submitted (05-JUN-2007) to the EMBL/GenBank/DDBJ databases.
RL Winter S., Plant Virus Division, DSMZ, c/o BBA, Messeweg 11/12, 38104,
RL GERMANY.
XX
RN [2]
RA Dizadji A., Koohi-Habibi M., Izadpanah K., Dietrich C., Mossahebi G.H.,
RA Winter S.;
RT "Characterisation of lettuce virus X, a new potexvirus infecting lettuce in
RT Iran";
RL Arch. Virol. 153(10):1867-1875(2008).
XX
FH Key Location/Qualifiers
FH
FT source 1. .7212
FT /organism="Lettuce virus X"
FT /host="Lactuca sativa"
FT /mol_type="genomic RNA"
FT /country="Iran:Karaj"
FT /identified_by="Stephan Winter"
FT /db_xref="taxon:447171"
FT CDS 93. .5219
FT /transl_table=1
FT /gene="RdRp"
FT /product="RNA-dependent RNA polymerase"
FT /db_xref="UniProtKB/TrEMBL:B3CJG2"
FT /protein_id="CAN88808.1"
FT /translation="MSRIRNVLDRIRDPSVQTAICESAYTQIRPVLKEALINCPYALND
FT NEADALENLGISVNPYAVQTHTHAAAKAIENQMLQIVGHHLPKSKVTFLFLKRSKLRYL
FT RRAAALKDTFMNKEVEPKDFFRYDSDTIHSRIQEVSTSVAYMSDTLHFMTLEELAHLFE
FT SSPRLDTLLATVVLPVEALHRKTSLHPAVYSINYNKDGFEYIPGNHGGGAYFHPYNTLE
FT WLKVRQLECAPRYKFGRPFTLTFQMVESLGANHLFIIRRGLFETPQYRTFCRNTFVLFP
FT KIFHPASSNANRPITKTKAMQMWLYVKAVKAVTERDIYAKIHQVLPTNELELYEPDELV
FT HLANYFFFLSNLKSYTCYEDLLSGGLIKRLTRPVRTAVTRFIEFFAGRNDFNKLMDALK
FT WEPFTYTLEPAVYKTKVGSHVIHQTMEATGRTESAVIRDLLAAHQNPDLLQPEDLIPTE
FT PPTFLDRTLFQGSADSTQPRADHQRDAAPTRPTTARTTEDRQAGGPEPEPELETTTTPA
FT PTPSTLVTEAAGTTPSTSHPPQTEASTSTGMPHVTQDPNPMPQSAATDEEERHKRDPTK
FT MCVCASGWSPEPFFDLVPGSLVTKLKTRDAFFFSTRPDITYGHDKVSYARNDWPLVLTD
FT FLRTVGFQANGALLQIYAKGPGIPWHKDDEPCYDGQPILTLNFGQATFEFSNGVKMPLK
FT DGEYFVMAGPWLKLKHRVTNCSSNRMSITFRTHTHTIFGHPLPGDSVNPKPEDKPRPAP
FT GNQTPPAPASKETPPPQSTHQATDDSTSPFQANTSNRTRGQAPPHPQTAGHHDGDSNEL
FT PKKNFSHSPPWNAWIPLLNAHGFNGHEQQLNPEGFLIIPISDVKQLPHCPFPDTVPKLL
FT QENLKRMRRFPTPITLRAKRAAAYASDVKNNRTGKLLSSMDLAWKASLAYKMQFDDLIL
FT PGIVIHGCGGSGKSQMIQSFMASPLAEENNVTVITPTVELRNDWATKVPNVTAENFKTF
FT EKAMIQPCNSVVVFDDYTKLPPGYIEALLMHHRNVDLFILTGDSRQSVYHESNSEAYIS
FT TLSEAVEVFEPYSEFYVNATHRNVTGLANKLGVYSERQGKLRVSFSTHHLKGSRIPLLV
FT PSNLKRNAFLDVGHRTMTYAGCQGLTAPKVQILLDNHTEMCSERVLYTALSRAVDQIHF
FT INTGPNSSDWWAKLESTPYLKAFIDTYRDERTEALISAPREPTPPQVPAPKTHFPPAPK
FT HLLEPLVASLTDKESRELFNENTGMSNAIQTEDPVVQLFQHQQAKDETLYWATIEARLS
FT ISTPEANVKEFALKRDVGDVLFANYAKIMHLPDQPVPFDPRMWEISAAEVKNVYLSKPV
FT GNLVNAATRQSPDFPSDKIALFLKSQWVKKTEKLGVLKVKPGQTIASFMQETVMLYGTM
FT ARYLRKMRARYQPDNIFINCEKTPEDLNEFVKTRWNFNVQAHTNDFTAFDQSQDGAMLQ
FT FEVLKAKFFNVPADIIEGYITIKLNANIFLGTLSIMRLSGEGPTFDANTECSIAYNATR
FT FHLDDSVAQVYAGDDMALDHKVPEKASFIRLQQKLKLTSKPLYPTQTPGDYAEFCGWSF
FT TPDGIMKASLKMHASIELQKRINNFHESARSYALDLKYAYDMGDLLHDHLTEAEAEYHV
FT QSVRDMHLAHQQDVLVNGAASPPTSPVHSGSQARSSFVTKLVGSAKTKARNASKRRAKV
FT RVVDLSTNTFA"
FT CDS 5247. .5951
FT /transl_table=1
FT /gene="TGBp1"
FT /product="triple-gene-block protein 1"
FT /db_xref="UniProtKB/TrEMBL:B3CJG3"
FT /protein_id="CAN88809.1"
FT /translation="MAVPLLHKLLLENEFQRTATPLSYPIIIFGTAGSGKTTIIRLLAA
FT AYPDLHFSSFRPCLLLPNTRRSQVAANPLTPTDVLDEFLAGPNPAVSLAKFCDPLQYNC
FT TDLPLPHYTSNHTYRFCPATCDLLNQLFSTTLSSRLPTAASITRPDPYSQDPSGTVVAL
FT EQDLLDILKQHGAFPKKPAELTGQTLPAVAFYCSSLQDAYDADPAATFIALTRHTTKLE
FT IFELDARPDPTA"
FT CDS 5926. .6267
FT /transl_table=1
FT /gene="TGBp2"
FT /product="triple-gene-block-protein 2"
FT /db_xref="UniProtKB/TrEMBL:B3CJG4"
FT /protein_id="CAN88810.1"
FT /translation="MPGLTPPPNHEHTFQIIAIGFLCCGIIYALRTNHAPHTGDQQHSL
FT PFGGHYQDGTKRVIYNSPSYPNVRCSKLLALAAILGLSAFILGNQWYSRRSVTRIHTCV
FT HCSNVPPSL"
FT CDS 6125. .6379
FT /transl_table=1
FT /gene="TGBp3"
FT /product="triple-gene-block-protein 3"
FT /db_xref="UniProtKB/TrEMBL:B3CJG5"
FT /protein_id="CAN88811.1"
FT /translation="MSDAPSSWPWRRSSGCQPLSWAINGTLGALLLVFILVCIAPTYHH
FT PCRVVISGHTITITDCPNAAEILRGLDVAPWNGVKFPQL"
FT CDS 6410. .7138
FT /transl_table=1
FT /gene="CP"
FT /product="coat protein"
FT /db_xref="UniProtKB/TrEMBL:B3CJG6"
FT /protein_id="CAN88812.1"
FT /translation="MGTPQAVNTPVNNPPRPTPVLQRPPANSSGPNLADPNRAPSMEDL
FT AQVKYVSSSSAVATPAQITKLGEWFVKVGIEPNSTGPAMWDLARAYADVQASRSAMLTG
FT ASAADPNVSRQSLARQLDAVFLTPRQFCMYFAKVVWNILLTTQVPPASWAKLGYSYDCR
FT FAAFDFFDGVLNPAALDPADGLVRQPSPREIQAHQVAKSASLARQRISEGNFVSSLSDV
FT THGRIGGINSMYAIEAPPEF"
XX
SQ Sequence 7212 BP; 1841 A; 2422 C; 1518 G; 1431 T; 0 other;
am745758 Length: 7212 23-OCT-2008 Type: N Check: 3841 ..
1 ggaaaactaa acaaaacaaa cgaaaacaaa cttaaacctc tccacacata
51 accacaggcc aaaaccggaa aacccctcca ctttcgccta ttatgtcgag
101 aattcgtaac gttttggata ggatcagaga cccctccgta caaactgcta
151 tttgcgaatc cgcttataca caaatacggc cagtcctgaa agaagcccta
201 attaactgcc cttacgctct gaacgacaat gaggctgacg cactagagaa
251 tttaggcatc tctgtcaacc cctacgctgt tcaaacccac acccacgctg
301 cggctaaagc catcgagaat caaatgctac agattgtggg ccaccaccta
351 cccaagtcca aagtcacctt cctctttctc aagagaagca agctacgcta
401 ccttagaaga gcggccgcac tgaaagacac attcatgaac aaagaagtgg
451 agcccaaaga cttctttcgc tacgactccg acaccatcca ctcccgcata
501 caagaagtca gcaccagcgt ggcgtacatg tccgacacct tacactttat
551 gactcttgaa gagctcgcac acctctttga gtcatcgccc cgactggaca
601 ccctcctggc caccgtagtg cttcccgtgg aggccttgca tcgcaaaacc
651 tcactacacc cggccgtgta ctccataaac tacaataaag acggctttga
701 gtacatccct ggcaaccatg gcggcggagc ttacttccac ccgtacaaca
751 cactggaatg gctcaaagtc cggcagctcg agtgtgcccc aaggtataaa
801 ttcggccggc ccttcaccct gaccttccaa atggtcgagt ccctcggtgc
851 caaccacctc ttcataatca gacgcggtct ttttgaaaca ccccaatacc
901 gcaccttctg ccgcaacacc ttcgtgctgt tcccaaagat cttccaccca
951 gcaagttcga acgcaaaccg gccaatcacc aagaccaagg ccatgcaaat
1001 gtggctatat gtgaaggctg tcaaagcggt aaccgagaga gacatctatg
1051 cgaaaataca ccaggttctg ccgacgaacg aacttgaact ctacgagcca
1101 gacgaacttg tgcacctcgc caactacttc ttcttccttt ccaacctcaa
1151 atcttacacc tgttacgagg atctgctgtc tgggggactc atcaaaagat
1201 taacacggcc cgtacgaaca gccgtaactc gattcatcga gttcttcgcc
1251 ggccgcaatg actttaacaa gctgatggat gccctcaagt gggagccctt
1301 cacatacacg ctcgagcctg ccgtctacaa aaccaaagtg ggaagccatg
1351 tcatccacca aacgatggag gccaccggcc gaaccgaaag cgccgtcata
1401 agggacctgc tcgccgccca ccagaaccca gacctcctcc aacctgaaga
1451 ccttatccct accgaaccgc caaccttcct agacagaacc ctgttccaag
1501 gctcagccga ctctacccag ccacgcgccg accaccaacg agatgcggca
1551 ccaaccaggc cgacaactgc gcgcaccact gaagacagac aagccggcgg
1601 tcccgaaccc gagcctgagc tggaaacaac aacaacgcca gcgcccacac
1651 catcgacctt agtcactgaa gcagctggca caaccccttc caccagccat
1701 ccaccccaaa ccgaagcctc tactagcact gggatgcccc acgtcaccca
1751 agacccgaac cccatgccgc aaagcgctgc taccgacgaa gaagagcgac
1801 acaaaagaga tcccaccaaa atgtgcgtct gcgcatctgg ctggtcacct
1851 gaaccttttt tcgacctggt accaggctct ctagtcacca agctgaagac
1901 gagagacgct ttcttcttct caacacggcc agacatcaca tacggtcacg
1951 acaaggtgtc ctacgcgcgg aacgactggc ccctcgtttt aactgacttc
2001 ctacgcacag tgggcttcca agccaatggg gcactcctcc aaatttacgc
2051 caaggggcca ggcattccat ggcataaaga cgacgagccc tgctatgacg
2101 ggcagcccat attgactttg aactttggtc aagctacttt cgagttcagc
2151 aatggagtca agatgccctt aaaagatggg gaatattttg tgatggccgg
2201 cccatggctg aaactcaaac accgagtcac caactgcagc tccaaccgca
2251 tgtctatcac cttccgcact cacactcata cgatctttgg ccaccccctg
2301 cctggagaca gtgtgaaccc caaaccagag gacaaaccac gtcccgctcc
2351 tggcaaccaa acccctccag cccccgcgtc caaggaaacg ccaccgccac
2401 agtccacgca ccaggcaact gacgactcca cctccccctt tcaggcaaac
2451 actagcaacc gtacccgcgg ccaggcaccg ccccacccac agacagccgg
2501 ccaccacgat ggtgactcta acgagcttcc aaagaaaaat ttttcccact
2551 caccaccatg gaacgcctgg attcccctgc tgaacgccca cggtttcaac
2601 ggtcacgagc aacagttaaa ccctgaaggg tttctcataa ttcccattag
2651 tgacgtgaag cagctaccac actgcccctt cccagacacg gtgcccaagc
2701 tactacagga aaacctgaaa cgcatgcgcc gcttccccac gcccatcacc
2751 ctgcgagcca aacgggctgc agcctacgcc tcagacgtca agaacaaccg
2801 cacgggcaaa ctcctgagct ccatggacct cgcttggaag gctagcctcg
2851 cctacaagat gcaatttgac gatctcatac tcccagggat tgttatccac
2901 ggttgcggtg gctccggcaa gtcgcagatg attcagtctt tcatggcgtc
2951 ccccttagct gaggaaaaca acgtcacagt catcacaccc accgttgaac
3001 tacgaaatga ttgggcgacc aaggtaccta acgttacggc ggaaaatttc
3051 aaaacatttg agaaggccat gatccagcca tgcaactccg tggtggtgtt
3101 cgacgactac accaagctgc ccccaggata catcgaggcg ctgctgatgc
3151 accaccgtaa cgttgatctt ttcatcctca caggtgacag ccggcaaagt
3201 gtgtaccacg agagcaattc agaagcctac atctctaccc tctccgaagc
3251 cgtggaggtt ttcgagccct acagcgaatt ctacgtcaac gccactcacc
3301 gaaatgtcac cgggctggcc aacaaactgg gagtctactc agaaagacaa
3351 gggaagctac gagtttcctt cagcacccac catctcaaag gctcccgcat
3401 acccctactt gtgccttcca acctgaagcg gaacgctttc ttggacgtgg
3451 gccatcgaac catgacgtac gccggctgcc aaggactaac cgcaccgaaa
3501 gttcaaatct tgttggacaa ccataccgaa atgtgctcag agagggtact
3551 ctacaccgca ctatccaggg ccgtcgacca gatccatttc ataaacacag
3601 gccctaactc ctctgactgg tgggctaagc ttgagtcgac cccctacctg
3651 aaggccttca ttgacaccta ccgcgacgaa cgcactgagg ccctgatttc
3701 cgcaccccga gaacccacac ccccgcaggt gcccgctcct aagactcact
3751 ttccacctgc gccaaaacac ctgttagagc ctctggttgc gtcactcacg
3801 gacaaggaga gtagggagct attcaacgaa aacaccggca tgagcaacgc
3851 catccaaacg gaagatccag tggtgcaact gtttcaacat caacaggcaa
3901 aggacgagac tctctactgg gccaccattg aagctagact ctccatctca
3951 acccctgagg ccaatgtgaa ggaattcgcc ttgaaacgcg acgtcggaga
4001 tgtgctgttc gccaactacg caaaaattat gcacctgcca gatcaaccgg
4051 tgcccttcga cccaagaatg tgggagatct ccgccgccga ggtcaagaat
4101 gtttacctca gcaagcctgt agggaacctc gtcaacgccg ccactcgcca
4151 aagcccagac ttccccagcg acaagatcgc actgttcctg aagtcccaat
4201 gggtcaagaa gacagagaag cttggggtgt taaaagtgaa gcccggccag
4251 accatcgcct cattcatgca agagactgtc atgctctacg ggaccatggc
4301 ccgctacctc aggaagatgc gagctcgcta ccagccagac aacatattca
4351 tcaactgcga gaaaacgcct gaggacttga acgagtttgt caagactaga
4401 tggaacttca atgtacaagc ccacaccaat gatttcacgg ctttcgacca
4451 gtcacaggat ggcgccatgc tacagtttga agtcctgaaa gctaagttct
4501 tcaacgttcc ggccgacatc atcgagggtt acatcaccat taagctgaac
4551 gccaacatct tcctcgggac cctaagcatc atgcggctct ccggcgaagg
4601 ccccacattc gacgccaaca ccgagtgttc catcgcctac aatgccacga
4651 ggttccattt ggacgactcg gtggcccaag tgtacgccgg agacgatatg
4701 gccttggacc acaaagtgcc ggaaaaagct agcttcatac ggctgcaaca
4751 gaaactcaag cttacctcca agccactcta ccctacccag actcccgggg
4801 actacgctga gttctgcggt tggtcattca cacccgacgg aatcatgaaa
4851 gccagcctca agatgcacgc cagcattgaa cttcagaaac gcattaacaa
4901 tttccatgaa agcgcccgct cctacgcgct agatctgaag tatgcttacg
4951 acatgggcga tttactccac gaccatctca cggaagctga agccgaatac
5001 catgtccagt cggtacgcga catgcacctg gctcatcaac aagacgtact
5051 cgtcaacggc gcagccagcc ccccaacaag cccagtacac agtggctcac
5101 aagcgcgcag cagtttcgtc actaaacttg tcggcagtgc taagaccaag
5151 gcccgtaatg ccagcaagcg ccgtgctaag gtacgtgtgg tggacctctc
5201 caccaacacc ttcgcatagc ggggttaagt taccttcgtt ctcgaaatgg
5251 ctgtacctct tcttcacaaa ttacttctcg agaacgaatt tcaaaggaca
5301 gccacccccc tctcctaccc cattatcatc ttcggcactg caggttctgg
5351 gaaaacaacc atcattcgcc ttcttgctgc cgcttacccc gacctgcact
5401 tctccagctt ccgaccttgc ctcctccttc caaacacccg ccgttcacaa
5451 gttgccgcca acccgctcac gcccaccgac gtcctagacg aatttctcgc
5501 tgggccgaac cctgctgttt ccttagccaa gttctgcgac cccctccaat
5551 acaactgcac tgatttgccg cttccgcact acacttccaa tcatacctac
5601 cggttctgcc cagccacctg tgatctcttg aaccagcttt tcagcaccac
5651 cctttcctct cgtctgccaa ccgccgcctc gatcactcgg cccgacccgt
5701 actcacaaga cccttctggg accgtggtcg ctctcgaaca ggacctgctc
5751 gacatcctta aacaacacgg cgcctttccc aagaaaccag cagagctaac
5801 cggccagacc ctgcccgctg tcgccttcta ctgctcttca cttcaagacg
5851 cttacgacgc tgacccggcg gccaccttca ttgccctgac tcgccatacc
5901 accaagttgg agatcttcga gttagatgcc aggcctgacc ccaccgccta
5951 accacgagca cactttccag attatcgcca ttggcttcct atgttgtggc
6001 atcatatacg ccttgcggac gaaccacgcg ccccacacgg gagaccaaca
6051 gcattctctt ccctttggtg gccattacca ggacggcacg aagcgagtca
6101 tctacaactc accgtcatac ccgaatgtca gatgctccaa gctcttggcc
6151 ctggcggcga tcctcgggct gtcagccttt atcctgggca atcaatggta
6201 ctctcggcgc tctgttactc gtattcatac ttgtgtgcat tgctccaacg
6251 taccaccatc cctgtagagt ggtcatttcc ggacacacta ttacaatcac
6301 cgattgcccg aatgcagctg aaattctgcg tggtctcgat gtcgccccct
6351 ggaacggggt taagtttcct caattgtgaa actttgagaa ctttcccttt
6401 caacatacca tgggaacccc acaagctgtc aacaccccgg tcaacaaccc
6451 gcccaggccg accccagttc tccagcgtcc tccagctaac tcttccggtc
6501 ccaacctcgc cgacccaaac cgcgcacctt ccatggaaga cctcgcccag
6551 gtcaaatatg tgtcttcctc ctccgccgtc gccaccccgg cccaaatcac
6601 caaactcggc gagtggttcg tcaaagtcgg catcgaaccc aactccactg
6651 gacctgccat gtgggacctc gcccgcgctt acgctgatgt gcaggctagc
6701 cgttccgcca tgctcaccgg agcatcggct gctgacccca acgtctcaag
6751 acagtccctc gcgagacaac ttgacgcagt cttcctcacc ccgagacaat
6801 tctgcatgta cttcgcaaaa gtcgtgtgga acatcctact cactacgcaa
6851 gttcctccag ctagctgggc aaaactcgga tactcctacg attgccggtt
6901 cgccgctttc gacttcttcg acggagtgct caacccagcc gcccttgacc
6951 cagctgacgg cctcgtcagg caacccagcc cacgggaaat ccaagctcac
7001 caagttgcca agtctgcctc actcgctaga caaagaatct ccgaaggcaa
7051 cttcgtctcc agcctctccg atgtcaccca cggtcgcata ggcggcatca
7101 actccatgta cgcgatcgaa gcgccacccg aattttaata ctccttgccc
7151 aacttaaata aggaggtggt tttctacagt ttgttttcca cttacgcctt
7201 tctagcgtaa gt