Sequence of DPV Cotton leaf curl Burewala virus
Cotton leaf curl virus-[Burewala] DNA A, complete sequence, clone LA 7
ACC No: AM774297
Dated: 2010-08-11 | Length: 2759 | CRC: -1767971702
ID AM774297; SV 1; circular; genomic DNA; STD; VRL; 2759 BP.
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AC AM774297;
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DT 07-JAN-2010 (Rel. 103, Created)
DT 11-AUG-2010 (Rel. 105, Last updated, Version 2)
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DE Cotton leaf curl virus-[Burewala] DNA A, complete sequence, clone LA 7
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KW AC1 gene; AC3 gene; AC4 gene; AV1 gene; AV2 gene; C4 protein; Coat protein;
KW pre-coat protein; replication associated protein;
KW replication enhancer protein.
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OS Cotton leaf curl Burewala virus - [India:Vehari:2006]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2759
RA Amrao L.;
RT ;
RL Submitted (24-JUL-2007) to the EMBL/GenBank/DDBJ databases.
RL Amrao L., Plant Biotehnology Division, NIBGE, Jhang Road, Faisalabad, P.O.
RL Box 577, PAKISTAN.
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RN [2]
RA Amrao L., Amin I., Shahid M.S., Briddon R.W., Mansoor S.;
RT "Cotton leaf curl disease in resistant cotton is associated with a single
RT begomovirus that lacks an intact transcriptional activator protein";
RL Virus Res. 152(1-2):153-163(2010).
XX
FH Key Location/Qualifiers
FH
FT source 1. .2759
FT /organism="Cotton leaf curl Burewala virus -
FT [India:Vehari:2006]"
FT /mol_type="genomic DNA"
FT /country="Pakistan:Rahim Yar Khan"
FT /collected_by="Luqman Amrao"
FT /collection_date="Jun-2004"
FT /clone="LA 7"
FT /tissue_type="leaf"
FT /db_xref="taxon:418448"
FT CDS 132. .488
FT /transl_table=1
FT /gene="AV2"
FT /product="pre-coat protein"
FT /db_xref="GOA:D2N211"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:D2N211"
FT /protein_id="CAO85773.1"
FT /translation="MWDPLLNEFPDTVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDL
FT ILVIRARNYVEATSRYNHFHARFEGTPPSQLRQPICEPCCCPHCPRHQIKSMGEQAHEQ
FT KAQDVQDVQKSRCS"
FT CDS 292. .1062
FT /transl_table=1
FT /gene="AV1"
FT /product="coat protein"
FT /db_xref="GOA:D2N212"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:D2N212"
FT /protein_id="CAO85774.1"
FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVSRAAAPIVRVTKSKAWA
FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHR
FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT STATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH
FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT CDS complement(1059. .1463)
FT /transl_table=1
FT /gene="AC3"
FT /product="replication enhancer protein"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:D2N213"
FT /protein_id="CAO85775.1"
FT /translation="MDSRTGEPITAAQAGNGAYIWEVPNPLYFKIISHVNRPFTTNMDI
FT LTIRIQFNHNLRKALGIHKCFIAFRIWMTSQPPTGRFLRVFRTQVLKYLNNLGIVSINN
FT VVRAVDHVLWNVLQLVVFVDQSSSIKLNIY"
FT CDS complement(1505. .2596)
FT /transl_table=1
FT /gene="AC1"
FT /product="replication associated protein"
FT /db_xref="GOA:D2N214"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProtKB/TrEMBL:D2N214"
FT /protein_id="CAO85776.1"
FT /translation="MAPPKRFKVQAKNYFITYPQCSLTKEEALSQIQAINTPSNKKYIK
FT LCRELHEDGSPHLHVLIQFEGKFVCTNNRFFDLVSPTRSAHFHPNIQGAKLSSDVKAYI
FT DKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALKVIKELAPKDFVLQFH
FT NLNANLDRIFQEPPAPYISPFSPSSFDQVPEELEVWAIDNVVDAAARPLRPRSIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPTIFLCNSGPNSSYKEFLNEEKNTALKNWALKNAIFITLEGPL
FT YSASNQSTAQGSKETQQEEESRY"
FT CDS complement(2308. .2682)
FT /transl_table=1
FT /gene="AC4"
FT /product="C4 protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:D2N215"
FT /protein_id="CAO85777.1"
FT /translation="MPFGDTINCIQSPIPRVKAHQLSLIDQSQWLPPNVLKYKPKIISS
FT LIHSAHSLKRKHFPKFKPSTHPRIKNTSNSAESYTKMGALISMCSSSSRANSSARITDS
FT STWYPQPGQHISIRTFRELN"
XX
SQ Sequence 2759 BP; 722 A; 541 C; 643 G; 853 T; 0 other;
am774297 Length: 2759 11-AUG-2010 Type: N Check: 4318 ..
1 accggatggc cgcgcgattt ttttgtgggc cctaccatta actcttgtcg
51 gccaatcata tgacgcgctc aaagcttaaa taattctccc gcttattata
101 agtacttcgt tgctaagtat gcgtttgaaa aatgtgggat ccactgttaa
151 atgagttccc cgacaccgtt cacggtttta ggtgtatgtt agcagttaaa
201 tatttgcagt tagtagagaa aacttactct cctgatacat tgggttacga
251 tttgataagg gatttaatcc tggtaataag ggctaggaat tatgtcgaag
301 cgaccagcag atataatcat ttccacgccc gcttcgaagg tacgccgccg
351 tctcaacttc gacagcccat atgtgagccg tgctgctgcc cccattgtcc
401 gcgtcaccaa atcaaaagca tgggcgaaca ggcccatgaa cagaaagccc
451 aggatgtaca ggatgtacag aagtccagat gttcctagag gatgtgaagg
501 tccatgtaag gttcagtcat ttgagtccag acatgatatt cagcatatag
551 gtaaagtaat gtgtgttagt gatgttactc gtggtactgg gctgacccat
601 agagttggta agagattttg tgttaagtct gtttatgtgt tgggtaagat
651 ctggatggat gagaacatta agacgaagaa tcacacgaat agtgtgatgt
701 ttttcttggt tagagatcgt agacctgttg ataaacctca agattttgga
751 gaggtattta atatgtttga taatgagccc agtacggcga ctgtgaagaa
801 tgttcatcgt gataggtatc aagttctgcg caaatggtat gcaactgtca
851 ccggtggaca atacgcttca aaggaacaag ctctcgtgaa gaaatttatt
901 agagttaata attatgttgt gtataaccag caggaagctg gcaagtatga
951 gaatcattct gagaatgctt taatgttgta tatggcgtgt actcacgcct
1001 ctaacccagt gtatgctacc ttgaagatac ggatctactt ctatgattcc
1051 gtgacaaatt aataaatatt taattttatt gaagatgatt ggtctacaaa
1101 tacaacaagt tgtaatacat tccataatac atgatcaact gctctaacta
1151 cattattaat actgacaatt cctaagttat ttaaatattt aagcacttga
1201 gtcctaaaga cccttaagaa acgaccagtc ggaggctgtg aggtcatcca
1251 gattcggaaa gctatgaaac atttgtgtat ccccaacgct ttcctcaggt
1301 tgtgattgaa ctggatcctg atcgtgagta tatccatatt cgtcgtgaat
1351 ggacggttga cgtggctgat gatcttgaaa tagaggggat ttggaacttc
1401 ccagatatat gcgccattcc ctgcttgagc tgcagtgatg ggttcccctg
1451 tgcgtgaatc catggttgtg gcagttgatt gacagataat aagaacattc
1501 tcattcaata tctactctcc tcctcctgtt gcgtctcttt gcttccctgt
1551 gctgtacttt gattggaagc tgagtacagt ggtccttcga gagtgatgaa
1601 gattgcattt tttaaggccc aattctttaa tgctgtgttt ttttcctcgt
1651 tgaggaattc cttataactg ctgttcggac cagaattgca taggaagatt
1701 gtcggtatcc cgcctttaat ttgaactggc tttccgtatt ttgtgttgga
1751 ctgccagtct ctttgggccc ccatgaactc tttaaagtgt ttgaggaaat
1801 gcgggtcgac gtcatcaatg acgttgtacc aggcgtcgtt actgtatact
1851 ttgggactca ggtccagatg tccgcacaaa tagttatgtg gtcccaatga
1901 tctagcccac atcgtcttcc ccgttcgact atctccctca attactatac
1951 tccgaggtct aaggggccgc gcagcggcat cgacaacgtt atcgatggcc
2001 caaacttcaa gttcttctgg aacttgatcg aaagaagaag gagaaaaagg
2051 agaaatatag ggagccggtg gctcctgaaa gattctgtct agatttgcat
2101 ttaaattatg aaattgtagt acaaaatctt taggagctag ttccttaatg
2151 actttaagag cctctgactt actgcctgcg ttaagtgctg cggcgtaagc
2201 gtcgttggct gtctgctgtc ctcctcttgc tgatcttcca tcgatctgaa
2251 actctcccca ctcgagagtg tccccgtcct tgtcgatgta ggccttgaca
2301 tctgagctta atttagctcc ctgaatgttc ggatggaaat gtgctgacct
2351 ggttggggat accaggtcga agaatctgtt attcgtgcag acgaatttgc
2401 cctcgaactg gatgagcaca tggagatgag ggctcccatc ttcgtgtaac
2451 tctctgcaga gtttgatgta ttttttattc gagggtgtgt tgatggcttg
2501 aatttgggaa agtgcttcct ctttagtgag tgagcactgt ggataagtga
2551 tgaaataatt tttggcttgt actttaaaac gtttgggggg agccattgac
2601 tttggtcaat tagagacaac tgatgggctt ttactctagg aattggagac
2651 tggatacaat ttatagtgtc tccaaatggc atattctgta aataactaga
2701 agtttgtttg aaattcaaat tcccctttgg gctccaaaag cggccatccg
2751 tataatatt