Sequence of DPV Chickpea chlorotic dwarf virus

Chickpea chlorotic dwarf virus, complete genome, clone CCDV8

ACC No: AM900416

Dated: 2008-07-17 | Length: 2583 | CRC: 636103508

                
ID   AM900416; SV 1; circular; genomic DNA; STD; VRL; 2583 BP.
XX
AC   AM900416;
XX
DT   17-JUL-2008 (Rel. 96, Created)
DT   17-JUL-2008 (Rel. 96, Last updated, Version 1)
XX
DE   Chickpea chlorotic dwarf virus, complete genome, clone CCDV8
XX
KW   C1 gene; C2 gene; C2 protein; coat protein; complete genome;
KW   movement protein; Rep A protein; V1 gene; V2 gene.
XX
OS   Chickpea chlorotic dwarf virus
OC   Viruses; ssDNA viruses; Geminiviridae; Mastrevirus;
OC   unclassified Mastrevirus.
XX
RN   [1]
RP   1-2583
RA   Nahid N.;
RT   ;
RL   Submitted (11-OCT-2007) to the EMBL/GenBank/DDBJ databases.
RL   Nahid N., Plant Biotechnology Division, NIBGE, Jhang Road Faisalabad, P.O.
RL   Box 577, 38000, PAKISTAN.
XX
RN   [2]
RA   Nahid N., Amin I., Mansoor S., Rybicki E.P., van der Walt E., Briddon R.W.;
RT   "Two dicot-infecting mastreviruses (family Geminiviridae) occur in
RT   Pakistan";
RL   Arch. Virol. 153(8):1441-1451(2008).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2583
FT                   /organism="Chickpea chlorotic dwarf virus"
FT                   /mol_type="genomic DNA"
FT                   /country="Pakistan:Layyah"
FT                   /collection_date="2007"
FT                   /clone="CCDV8"
FT                   /tissue_type="leaf"
FT                   /virion
FT                   /db_xref="taxon:463360"
FT   CDS             132. .410
FT                   /gene="V1"
FT                   /product="movement protein"
FT                   /protein_id="CAP12615.1"
FT                   /translation="MERILYQVFPTDTNYSYDPPPVNTNSQGSSQTDFGKVVIALVVIL
FT                   VSVGVFYLAYSLFLKDCILLFKAKKQRTTTEIGFGQTPARNQDHPQP"
FT   CDS             423. .1160
FT                   /gene="V2"
FT                   /product="coat protein"
FT                   /protein_id="CAP12616.1"
FT                   /translation="MSTVTWGNKRKRSDRSSKAKSKSSGSYVPRSVSSRRESLQVATFS
FT                   WTSSGSGIKFSTGGAAYLVSNFPQGANDNCRHTNKTVLYKFMAKNTVYLDPSHYPKVFK
FT                   CPFTFWLVYDKAPGASVPSTGDIFEGPSLFPANPWTWTVSRAACHRFVVKKTWSVVVES
FT                   NGVDPGKAQSSSYYGPGPCNQIKSCNKFFKRLGVSTEWKNSSTGDVGDIKEGALYIVGA
FT                   PSQKSDVYVNGYFRVYFKSVGNQ"
FT   CDS             complement(1317. .1751)
FT                   /gene="C2"
FT                   /product="C2 protein"
FT                   /protein_id="CAP12617.1"
FT                   /translation="MDGRSNQEPRRPGARVPSLYICGPTRTGKTTWARSLGRHNYWNGT
FT                   IDFTTYDEHATYNVIDDIPFKFVPLWKQLIGCQFDFTVNPKYGKKKKIKGGVPSIILTN
FT                   RDEDWIPAMSEHQKEYFTDNCEIHYMDDGETFFARESSSH"
FT   CDS             complement(2330. .2407)
FT                   /gene="C1"
FT                   /product="truncated Rep A protein"
FT                   /function="replication initiation"
FT                   /protein_id="CAP12618.1"
FT                   /translation="MPSANKNFRFQSKYVFLTYPKCSSQ"
XX
SQ   Sequence 2583 BP; 664 A; 514 C; 650 G; 755 T; 0 other;

am900416 Length: 2583  17-JUL-2008  Type: N  Check: 499  ..

       1  accggcgtgg cccaccttat cgcgagcact ttagtgcgag cggttcagat
      51  ttaaagtgga aaagttcccg cccactaggg tttgctttag cttttgcttt
     101  ataaaaggcg cactaatggg tagaccgtag aatggaacgt attctgtatc
     151  aggtatttcc tacggatacg aattattcgt acgatcctcc tcctgtgaat
     201  acgaattccc agggatcctc tcaaacggat ttcgggaagg tggttatcgc
     251  cttggtggtt attctggtta gtgttggtgt gttctatctg gcgtatagtc
     301  tgttcttgaa ggattgtatc cttctgttca aggcgaagaa gcagaggacc
     351  accactgaaa tcgggtttgg tcaaacccct gctagaaacc aggatcatcc
     401  tcaaccttag gcggggtgca tcatgtcaac tgtgacgtgg ggaaacaaga
     451  ggaagcgcag cgataggtcc tcgaaggcga agagtaagtc ctctgggtct
     501  tatgtgccta gatctgtgtc ctccaggagg gaatcgttgc aggtggctac
     551  cttttcctgg accagttctg gttcgggtat caagttctct actggtggtg
     601  ctgcctacct tgtgagtaat tttccacagg gtgccaacga taactgtcgt
     651  cacaccaaca agaccgtgct atacaaattc atggccaaga atacggtgta
     701  cttggaccct agtcattatc ctaaggtctt taagtgcccg ttcacttttt
     751  ggctggtgta cgacaaggct cctggtgcaa gtgttcctag tactggggac
     801  atatttgaag gtccctctct attccctgct aatccctgga cgtggactgt
     851  gtctagggct gcctgccatc gttttgttgt caaaaaaacg tggtcagtgg
     901  tggtggagag caatggtgtt gatccaggaa aggcccaatc cagttcttat
     951  tatgggcctg gaccttgtaa tcagattaag tcctgcaata agttctttaa
    1001  gaggctgggt gtgtcaacgg agtggaaaaa tagttccacg ggggatgttg
    1051  gtgatataaa ggaaggagcc ctttacattg taggtgctcc ttcccagaag
    1101  tctgatgtat atgtaaatgg ttatttccga gtgtacttca agtccgttgg
    1151  caatcaataa aaatttatta ttatgaatat tttacattgt gcaagtaggt
    1201  agaaattcaa tatgttacat tacacacgaa atgagcaaaa aaaacacacc
    1251  taaaacaaaa gtacactacc cacgataata taactatagc ttaaccccgt
    1301  atgaggagag gcacgttcag tgactcgacg attcccgggc aaaaaaagtt
    1351  tcgccgtcat ccatataatg gatctcacaa ttgtctgtaa agtattcttt
    1401  ctgatgctca gacatagcag gaatccagtc ctcatctcta tttgttaaaa
    1451  ttattgaagg gacaccacct tttattttct tcttttttcc atacttaggg
    1501  ttgacagtga agtcgaactg gcaacctatt aattgcttcc acaatgggac
    1551  gaacttgaac gggatgtcgt caatgacatt gtaggtcgcg tgttcgtcgt
    1601  acgtggtgaa gtcgatggtc ccattccagt agttgtgtcg tccgaggctt
    1651  ctagcccagg tggtctttcc ggtacgagtt ggtccgcaga tgtagaggct
    1701  ggggactcta gctccaggcc ttctcggttc ctggttagat cggccatcca
    1751  ttcaaggtca gattgagctt gctgatatga aactggatgg acaagagtgt
    1801  aggcgtcgat gcttacttgg tacaggtgtg tatccctcca ttgtgctaga
    1851  tcctcatggc agcggagatc tgactcagtg aacggcgaca catatgcttc
    1901  aggttgtgga gggaatagct tgtttgcgga gtattcaagc cattgaagct
    1951  tggttgccca ttcatgtggg aactcctcct tgatcatgtc aagatattcc
    2001  tccttagacg ttgcagtctg gataatagtt cgccatcgtg cgtcagattt
    2051  gcggggagag actttatgat ctctgaaatc tcctcttgtt ttaatatctc
    2101  cgtccttgga tatgtattca aggacttgtt tagagtttct agctggctgg
    2151  atattagggt gatttccttc aaaatcgaaa aaagaaggat ccctaatcca
    2201  aggtttttta tcaagctgga taagagcatg atagtgggta gtgccatctt
    2251  gatgaagctc agtagcaaca gcaaggaaga aaataagaaa aggtgtgagt
    2301  ttctcccaga gaaactcgaa taaatcatct cattgagatg agcatttagg
    2351  gtaggtaagg aaaacatatt ttgattggaa tctgaagttc ttgtttgcag
    2401  aaggcatgtt tgttgtgact ccaagggttg gcttgaaact ctatcttata
    2451  accggcgtgg agacttggag acaagggtat ttttgtcatt taggctgggt
    2501  agtggaataa tgacatggca atgacttaaa gacgaagtct ttgcggaagc
    2551  gaataaaggt ggagccacgc cgaaattaat att