Sequence of DPV Chickpea chlorotic dwarf virus
Chickpea chlorotic dwarf virus, complete genome, clone CCDV8
ACC No: AM900416
Dated: 2008-07-17 | Length: 2583 | CRC: 636103508
ID AM900416; SV 1; circular; genomic DNA; STD; VRL; 2583 BP. XX AC AM900416; XX DT 17-JUL-2008 (Rel. 96, Created) DT 17-JUL-2008 (Rel. 96, Last updated, Version 1) XX DE Chickpea chlorotic dwarf virus, complete genome, clone CCDV8 XX KW C1 gene; C2 gene; C2 protein; coat protein; complete genome; KW movement protein; Rep A protein; V1 gene; V2 gene. XX OS Chickpea chlorotic dwarf virus OC Viruses; ssDNA viruses; Geminiviridae; Mastrevirus; OC unclassified Mastrevirus. XX RN [1] RP 1-2583 RA Nahid N.; RT ; RL Submitted (11-OCT-2007) to the EMBL/GenBank/DDBJ databases. RL Nahid N., Plant Biotechnology Division, NIBGE, Jhang Road Faisalabad, P.O. RL Box 577, 38000, PAKISTAN. XX RN [2] RA Nahid N., Amin I., Mansoor S., Rybicki E.P., van der Walt E., Briddon R.W.; RT "Two dicot-infecting mastreviruses (family Geminiviridae) occur in RT Pakistan"; RL Arch. Virol. 153(8):1441-1451(2008). XX FH Key Location/Qualifiers FH FT source 1. .2583 FT /organism="Chickpea chlorotic dwarf virus" FT /mol_type="genomic DNA" FT /country="Pakistan:Layyah" FT /collection_date="2007" FT /clone="CCDV8" FT /tissue_type="leaf" FT /virion FT /db_xref="taxon:463360" FT CDS 132. .410 FT /gene="V1" FT /product="movement protein" FT /protein_id="CAP12615.1" FT /translation="MERILYQVFPTDTNYSYDPPPVNTNSQGSSQTDFGKVVIALVVIL FT VSVGVFYLAYSLFLKDCILLFKAKKQRTTTEIGFGQTPARNQDHPQP" FT CDS 423. .1160 FT /gene="V2" FT /product="coat protein" FT /protein_id="CAP12616.1" FT /translation="MSTVTWGNKRKRSDRSSKAKSKSSGSYVPRSVSSRRESLQVATFS FT WTSSGSGIKFSTGGAAYLVSNFPQGANDNCRHTNKTVLYKFMAKNTVYLDPSHYPKVFK FT CPFTFWLVYDKAPGASVPSTGDIFEGPSLFPANPWTWTVSRAACHRFVVKKTWSVVVES FT NGVDPGKAQSSSYYGPGPCNQIKSCNKFFKRLGVSTEWKNSSTGDVGDIKEGALYIVGA FT PSQKSDVYVNGYFRVYFKSVGNQ" FT CDS complement(1317. .1751) FT /gene="C2" FT /product="C2 protein" FT /protein_id="CAP12617.1" FT /translation="MDGRSNQEPRRPGARVPSLYICGPTRTGKTTWARSLGRHNYWNGT FT IDFTTYDEHATYNVIDDIPFKFVPLWKQLIGCQFDFTVNPKYGKKKKIKGGVPSIILTN FT RDEDWIPAMSEHQKEYFTDNCEIHYMDDGETFFARESSSH" FT CDS complement(2330. .2407) FT /gene="C1" FT /product="truncated Rep A protein" FT /function="replication initiation" FT /protein_id="CAP12618.1" FT /translation="MPSANKNFRFQSKYVFLTYPKCSSQ" XX SQ Sequence 2583 BP; 664 A; 514 C; 650 G; 755 T; 0 other; am900416 Length: 2583 17-JUL-2008 Type: N Check: 499 .. 1 accggcgtgg cccaccttat cgcgagcact ttagtgcgag cggttcagat 51 ttaaagtgga aaagttcccg cccactaggg tttgctttag cttttgcttt 101 ataaaaggcg cactaatggg tagaccgtag aatggaacgt attctgtatc 151 aggtatttcc tacggatacg aattattcgt acgatcctcc tcctgtgaat 201 acgaattccc agggatcctc tcaaacggat ttcgggaagg tggttatcgc 251 cttggtggtt attctggtta gtgttggtgt gttctatctg gcgtatagtc 301 tgttcttgaa ggattgtatc cttctgttca aggcgaagaa gcagaggacc 351 accactgaaa tcgggtttgg tcaaacccct gctagaaacc aggatcatcc 401 tcaaccttag gcggggtgca tcatgtcaac tgtgacgtgg ggaaacaaga 451 ggaagcgcag cgataggtcc tcgaaggcga agagtaagtc ctctgggtct 501 tatgtgccta gatctgtgtc ctccaggagg gaatcgttgc aggtggctac 551 cttttcctgg accagttctg gttcgggtat caagttctct actggtggtg 601 ctgcctacct tgtgagtaat tttccacagg gtgccaacga taactgtcgt 651 cacaccaaca agaccgtgct atacaaattc atggccaaga atacggtgta 701 cttggaccct agtcattatc ctaaggtctt taagtgcccg ttcacttttt 751 ggctggtgta cgacaaggct cctggtgcaa gtgttcctag tactggggac 801 atatttgaag gtccctctct attccctgct aatccctgga cgtggactgt 851 gtctagggct gcctgccatc gttttgttgt caaaaaaacg tggtcagtgg 901 tggtggagag caatggtgtt gatccaggaa aggcccaatc cagttcttat 951 tatgggcctg gaccttgtaa tcagattaag tcctgcaata agttctttaa 1001 gaggctgggt gtgtcaacgg agtggaaaaa tagttccacg ggggatgttg 1051 gtgatataaa ggaaggagcc ctttacattg taggtgctcc ttcccagaag 1101 tctgatgtat atgtaaatgg ttatttccga gtgtacttca agtccgttgg 1151 caatcaataa aaatttatta ttatgaatat tttacattgt gcaagtaggt 1201 agaaattcaa tatgttacat tacacacgaa atgagcaaaa aaaacacacc 1251 taaaacaaaa gtacactacc cacgataata taactatagc ttaaccccgt 1301 atgaggagag gcacgttcag tgactcgacg attcccgggc aaaaaaagtt 1351 tcgccgtcat ccatataatg gatctcacaa ttgtctgtaa agtattcttt 1401 ctgatgctca gacatagcag gaatccagtc ctcatctcta tttgttaaaa 1451 ttattgaagg gacaccacct tttattttct tcttttttcc atacttaggg 1501 ttgacagtga agtcgaactg gcaacctatt aattgcttcc acaatgggac 1551 gaacttgaac gggatgtcgt caatgacatt gtaggtcgcg tgttcgtcgt 1601 acgtggtgaa gtcgatggtc ccattccagt agttgtgtcg tccgaggctt 1651 ctagcccagg tggtctttcc ggtacgagtt ggtccgcaga tgtagaggct 1701 ggggactcta gctccaggcc ttctcggttc ctggttagat cggccatcca 1751 ttcaaggtca gattgagctt gctgatatga aactggatgg acaagagtgt 1801 aggcgtcgat gcttacttgg tacaggtgtg tatccctcca ttgtgctaga 1851 tcctcatggc agcggagatc tgactcagtg aacggcgaca catatgcttc 1901 aggttgtgga gggaatagct tgtttgcgga gtattcaagc cattgaagct 1951 tggttgccca ttcatgtggg aactcctcct tgatcatgtc aagatattcc 2001 tccttagacg ttgcagtctg gataatagtt cgccatcgtg cgtcagattt 2051 gcggggagag actttatgat ctctgaaatc tcctcttgtt ttaatatctc 2101 cgtccttgga tatgtattca aggacttgtt tagagtttct agctggctgg 2151 atattagggt gatttccttc aaaatcgaaa aaagaaggat ccctaatcca 2201 aggtttttta tcaagctgga taagagcatg atagtgggta gtgccatctt 2251 gatgaagctc agtagcaaca gcaaggaaga aaataagaaa aggtgtgagt 2301 ttctcccaga gaaactcgaa taaatcatct cattgagatg agcatttagg 2351 gtaggtaagg aaaacatatt ttgattggaa tctgaagttc ttgtttgcag 2401 aaggcatgtt tgttgtgact ccaagggttg gcttgaaact ctatcttata 2451 accggcgtgg agacttggag acaagggtat ttttgtcatt taggctgggt 2501 agtggaataa tgacatggca atgacttaaa gacgaagtct ttgcggaagc 2551 gaataaaggt ggagccacgc cgaaattaat att