Sequence of DPV Tomato yellow leaf curl virus

Tomato yellow leaf curl virus - Gezira precoat protein (V2), coat protein (V1), replication enhancer (C3), transactivation protein (C2), replication-associated protein (C1), and C4 genes, complete cds.

ACC No: AY044138

Dated: 2006-06-20 | Length: 2780 | CRC: 1332154845

                
ID   AY044138; SV 1; linear; genomic DNA; STD; VRL; 2780 BP.
XX
AC   AY044138;
XX
DT   06-AUG-2002 (Rel. 72, Created)
DT   20-JUN-2006 (Rel. 88, Last updated, Version 7)
XX
DE   Tomato yellow leaf curl virus - Gezira precoat protein (V2), coat protein
DE   (V1), replication enhancer (C3), transactivation protein (C2),
DE   replication-associated protein (C1), and C4 genes, complete cds.
XX
KW   .
XX
OS   Tomato yellow leaf curl virus - Gezira
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2780
RA   Brown J.K., Idris A.M.;
RT   "Genetic Differentiation of Whitefly Bemisia tabaci Mitochondrial
RT   Cytochrome Oxidase I, and Phylogeographic Concordance with the Coat Protein
RT   of the Plant Virus Genus Begomovirus";
RL   Ann. Entomol. Soc. Am. 98(6):827-837(2005).
XX
RN   [2]
RP   1-2780
RX   PUBMED; 15703848.
RA   Idris A.M., Brown J.K.;
RT   "Evidence for interspecific-recombination for three monopartite begomoviral
RT   genomes associated with the tomato leaf curl disease from central Sudan";
RL   Arch. Virol. 150(5):1003-1012(2005).
XX
RN   [3]
RP   1-2780
RA   Idris A.M., Brown J.K.;
RT   ;
RL   Submitted (06-JUL-2001) to the EMBL/GenBank/DDBJ databases.
RL   Plant Sciences, University of Arizona, Tucson, AZ 85721, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2780
FT                   /organism="Tomato yellow leaf curl virus - Gezira"
FT                   /isolate="TYLCV-SD"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:270150"
FT   gene            139. .489
FT                   /gene="V2"
FT   CDS             139. .489
FT                   /codon_start=1
FT                   /gene="V2"
FT                   /product="precoat protein"
FT                   /db_xref="GOA:Q8JNG1"
FT                   /db_xref="InterPro:IPR002511"
FT                   /db_xref="InterPro:IPR005159"
FT                   /db_xref="UniProtKB/TrEMBL:Q8JNG1"
FT                   /protein_id="AAL05292.1"
FT                   /translation="MWDPLLNEFPESVHGFRCMLAIKYLQAVEETYEPNTLGHDLIRDL
FT                   ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATVMDIQAHV
FT                   PKAQNIQNVSKS"
FT   gene            299. .1075
FT                   /gene="V1"
FT   CDS             299. .1075
FT                   /codon_start=1
FT                   /gene="V1"
FT                   /product="coat protein"
FT                   /note="encapsidation of viral genome"
FT                   /db_xref="GOA:Q8JNG0"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:Q8JNG0"
FT                   /protein_id="AAL05291.1"
FT                   /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSNRAAVPIVPGTNKRRSW
FT                   TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH
FT                   RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFSVRDRRPYGNSPMDFGQVFNMFDN
FT                   EPSTATVKNDYRDRFQVIRKFHATVIGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYE
FT                   NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN"
FT   gene            complement(1072. .1476)
FT                   /gene="C3"
FT   CDS             complement(1072. .1476)
FT                   /codon_start=1
FT                   /gene="C3"
FT                   /product="replication enhancer"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="InterPro:IPR008973"
FT                   /db_xref="UniProtKB/TrEMBL:Q8JNF9"
FT                   /protein_id="AAL05296.1"
FT                   /translation="MDSHTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDV
FT                   ISIQIRFNHNIRKVLGIHKCFLNFRIWTTLRPQTGRFLRVFRYQVLKYLDSLGVISINN
FT                   VIRAVDHVLYNVLEKTIDVTENHDIKYNVY"
FT   gene            complement(1217. .1624)
FT                   /gene="C2"
FT   CDS             complement(1217. .1624)
FT                   /codon_start=1
FT                   /gene="C2"
FT                   /product="transactivation protein"
FT                   /db_xref="GOA:Q8JNF8"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="InterPro:IPR009072"
FT                   /db_xref="UniProtKB/TrEMBL:Q8JNF8"
FT                   /protein_id="AAL05295.1"
FT                   /translation="MQPSSPSTSHCSQVPIKVQHKIAKKKPIRRKRVDLDCGCSYYLHL
FT                   NCNNHGFTHRGTHHCSSSREWRFYLGDKQSPLFQDNRTQPEAISNEPRRHFHSDKIQPQ
FT                   HQEGSGDSQMFSQLPNLDNLTASDWSFLKSI"
FT   gene            complement(1533. .2612)
FT                   /gene="C1"
FT   CDS             complement(1533. .2612)
FT                   /codon_start=1
FT                   /gene="C1"
FT                   /product="replication-associated protein"
FT                   /note="rep"
FT                   /db_xref="GOA:Q8JNF7"
FT                   /db_xref="HSSP:P27260"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="UniProtKB/TrEMBL:Q8JNF7"
FT                   /protein_id="AAL05293.1"
FT                   /translation="MAPPKRFQINCKNYFLTYPQCSLTREEALSQLQNLETPTNKKYIK
FT                   VCRELHENGEPHLHVLIQFEGKFKCQNQRFFDLVSPSRAAHFHPNIQGAKSSSDVKSYI
FT                   EKEGDTLDWGQFQIDGRSARGGQQSANDAYAAAINSGSKAEALRVLRELAPRDYILQFH
FT                   NLNSNLDRIFQEPPAPYSSPFLSSSFNQVPEELEVWVSENVMSSAARPWRPNSIIIEGD
FT                   SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT                   QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPL
FT                   FSSTNQGPTQDSQEETNKA"
FT   gene            complement(2153. .2455)
FT                   /gene="C4"
FT   CDS             complement(2153. .2455)
FT                   /codon_start=1
FT                   /gene="C4"
FT                   /product="unknown"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:Q8JNF6"
FT                   /protein_id="AAL05294.1"
FT                   /translation="MGNHIFMCLSNSRGNSSAKISDSSTWYPQAGQHISIQTFRELNPV
FT                   PTSSLTSRRRATPSTGDSFRSMEGLQEGDNNLQTTLTPQQLTLEVRQRLLEYLGN"
XX
SQ   Sequence 2780 BP; 765 A; 546 C; 614 G; 855 T; 0 other;

ay044138 Length: 2780  20-JUN-2006  Type: N  Check: 4172  ..

       1  accggatggc cgcgcccgaa aaaaaaaagt ggcccccacg cacaatttta
      51  tgttagccaa tcaaattaca tcatgaaacg ttagataagt attcatttgt
     101  ccttatatac ttggtcccca agttgtttgt ccagcaatat gtgggatcca
     151  cttctaaatg aatttcctga atctgttcat ggatttcgtt gtatgttagc
     201  tattaaatat ttgcaggccg ttgaggaaac ttacgagccc aatacattgg
     251  gccacgattt aattagggat cttatatctg ttgtaagggc acgtgactat
     301  gtcgaagcga ccaggcgata taatcatttc cacgcccgtc tcgaaggttc
     351  gccgaaggct gaacttcgac agcccataca gcaaccgtgc tgctgtcccc
     401  attgtcccag gcacaaacaa gcgacggtca tggacataca ggcccatgta
     451  ccgaaagccc agaatataca gaatgtatcg aagtcctgat gttccccgtg
     501  gatgtgaagg cccatgtaag gtccagtctt atgagcaacg ggatgatatt
     551  aagcatactg gtattgttcg ttgtgttagt gatgttactc gtggatccgg
     601  aattacccac agagtgggga agaggttctg tgttaaatcg atatattttt
     651  taggtaaagt ctggatggat gaaaatatca agaagcagaa tcacactaat
     701  caggtcatgt tcttctcggt ccgtgataga agaccctatg gaaacagccc
     751  aatggatttt gggcaggttt ttaatatgtt cgacaatgag cccagtaccg
     801  caaccgtgaa gaatgattac agggataggt ttcaagtgat caggaaattt
     851  catgctactg tcattggtgg gccttctgga atgaaggaac aggctttagt
     901  taagagattc tttagaatta acagtcatgt aacttataat catcaagagg
     951  ctgccaagta cgagaatcat actgagaacg ccttgttatt gtatatggca
    1001  tgtacgcatg cctctaatcc agtgtatgca actatgaaaa tacgcatcta
    1051  tttctatgat tcaatatcaa attaataaac attatatttt atatcatggt
    1101  tctctgttac atctattgtc ttttcaagta cattatataa tacatgatca
    1151  actgctctaa ttacattgtt aatagaaatt acaccaagac tatctaaata
    1201  cttaagaact tgatatctaa atactcttaa gaaacgacca gtctgaggcc
    1251  gtaaggttgt ccaaattcgg aagttgagaa aacatttgtg aatccccaga
    1301  accttcctga tgttgtggtt gaatcttatc tgaatggaaa tgacgtcgtg
    1351  gttcattaga aatggcctct ggctgtgttc tgttatcttg aaatagaggg
    1401  gattgtttat ctcccagata aaaacgccat tctctgcttg aggagcagtg
    1451  atgagttccc ctgtgtgtga atccatggtt gttgcagttg agatggaggt
    1501  agtatgagca gccacagtct aggtctacac gcttacgcct tattggtttc
    1551  ttcttggcta tcttgtgttg gaccttgatt ggtacttgag aacagtggct
    1601  cgtagagggt gacgaaggtt gcattcttga gagcccaatt tttcaaggat
    1651  atgttttttt cttcgtctag atattcccta tatgaggagg taggtcctgg
    1701  attgcagagg aagatagtgg gaattccccc tttaatttga atgggcttcc
    1751  cgtatttagt gttgctttgc cagtcccttt gggcccccat gaattccttg
    1801  aagtgcttta aataatgcgg gtctacgtca tcaatgacgt tgtaccacgc
    1851  atcattactg tacacctttg gacttaggtc tagatgtcca cataaatagt
    1901  tatgtgggcc tagagaccta gcccacattg ttttgcctgt tctgctatca
    1951  ccctcgatga taatactatt aggtctccat ggccgcgcgg cggaagacat
    2001  gacgttctcg gacacccata cttcaagttc ctctggaact tgattaaaag
    2051  aagaagataa aaaaggagaa ctataaggag ccggaggctc ctgaaaaatt
    2101  ctatctaaat tactatttaa attatgaaac tgtaaaatat aatctctggg
    2151  ggctaattcc ctaagtactc taagagcctc tgccttactt ccagagttaa
    2201  ttgctgcggc gtaagcgtcg tttgcagatt gttgtccccc tcttgcagac
    2251  cttccatcga tctgaaactg tccccagtcg agggtgtcgc cctccttctc
    2301  gatgtaagac ttgacgtcgg aactggattt agctccctga atgtttggat
    2351  ggaaatgtgc tgccctgctt ggggatacca ggtcgaagaa tcgctgattt
    2401  tggcacttga atttcccctc gaattggata agcacatgaa gatgtggttc
    2451  cccattctcg tggagttctc tgcaaacttt gatgtatttt ttatttgttg
    2501  gggtttctag gttttgtaat tgggaaagtg cctcttctct tgttaaggag
    2551  cactgaggat atgtgaggaa ataatttttg caatttattt ggaaacgctt
    2601  agggggagcc atatggtcaa tgagtaccga ttgaccaaga tttgcactta
    2651  tcccttgtat atcggtactc aatatatagt gagtaccaaa tggcactttg
    2701  gtaatttggt aaaagcatat tgcaattcaa aattcaaatt tgaaaaatca
    2751  aatcattaaa gcggccatcc gtataatatt