Sequence of DPV Tomato yellow leaf curl virus
Tomato yellow leaf curl virus - Gezira precoat protein (V2), coat protein (V1), replication enhancer (C3), transactivation protein (C2), replication-associated protein (C1), and C4 genes, complete cds.
ACC No: AY044138
Dated: 2006-06-20 | Length: 2780 | CRC: 1332154845
ID AY044138; SV 1; linear; genomic DNA; STD; VRL; 2780 BP. XX AC AY044138; XX DT 06-AUG-2002 (Rel. 72, Created) DT 20-JUN-2006 (Rel. 88, Last updated, Version 7) XX DE Tomato yellow leaf curl virus - Gezira precoat protein (V2), coat protein DE (V1), replication enhancer (C3), transactivation protein (C2), DE replication-associated protein (C1), and C4 genes, complete cds. XX KW . XX OS Tomato yellow leaf curl virus - Gezira OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2780 RA Brown J.K., Idris A.M.; RT "Genetic Differentiation of Whitefly Bemisia tabaci Mitochondrial RT Cytochrome Oxidase I, and Phylogeographic Concordance with the Coat Protein RT of the Plant Virus Genus Begomovirus"; RL Ann. Entomol. Soc. Am. 98(6):827-837(2005). XX RN [2] RP 1-2780 RX PUBMED; 15703848. RA Idris A.M., Brown J.K.; RT "Evidence for interspecific-recombination for three monopartite begomoviral RT genomes associated with the tomato leaf curl disease from central Sudan"; RL Arch. Virol. 150(5):1003-1012(2005). XX RN [3] RP 1-2780 RA Idris A.M., Brown J.K.; RT ; RL Submitted (06-JUL-2001) to the EMBL/GenBank/DDBJ databases. RL Plant Sciences, University of Arizona, Tucson, AZ 85721, USA XX FH Key Location/Qualifiers FH FT source 1. .2780 FT /organism="Tomato yellow leaf curl virus - Gezira" FT /isolate="TYLCV-SD" FT /mol_type="genomic DNA" FT /db_xref="taxon:270150" FT gene 139. .489 FT /gene="V2" FT CDS 139. .489 FT /codon_start=1 FT /gene="V2" FT /product="precoat protein" FT /db_xref="GOA:Q8JNG1" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q8JNG1" FT /protein_id="AAL05292.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQAVEETYEPNTLGHDLIRDL FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATVMDIQAHV FT PKAQNIQNVSKS" FT gene 299. .1075 FT /gene="V1" FT CDS 299. .1075 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /note="encapsidation of viral genome" FT /db_xref="GOA:Q8JNG0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q8JNG0" FT /protein_id="AAL05291.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSNRAAVPIVPGTNKRRSW FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFSVRDRRPYGNSPMDFGQVFNMFDN FT EPSTATVKNDYRDRFQVIRKFHATVIGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN" FT gene complement(1072. .1476) FT /gene="C3" FT CDS complement(1072. .1476) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancer" FT /db_xref="InterPro:IPR000657" FT /db_xref="InterPro:IPR008973" FT /db_xref="UniProtKB/TrEMBL:Q8JNF9" FT /protein_id="AAL05296.1" FT /translation="MDSHTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDV FT ISIQIRFNHNIRKVLGIHKCFLNFRIWTTLRPQTGRFLRVFRYQVLKYLDSLGVISINN FT VIRAVDHVLYNVLEKTIDVTENHDIKYNVY" FT gene complement(1217. .1624) FT /gene="C2" FT CDS complement(1217. .1624) FT /codon_start=1 FT /gene="C2" FT /product="transactivation protein" FT /db_xref="GOA:Q8JNF8" FT /db_xref="InterPro:IPR000942" FT /db_xref="InterPro:IPR009072" FT /db_xref="UniProtKB/TrEMBL:Q8JNF8" FT /protein_id="AAL05295.1" FT /translation="MQPSSPSTSHCSQVPIKVQHKIAKKKPIRRKRVDLDCGCSYYLHL FT NCNNHGFTHRGTHHCSSSREWRFYLGDKQSPLFQDNRTQPEAISNEPRRHFHSDKIQPQ FT HQEGSGDSQMFSQLPNLDNLTASDWSFLKSI" FT gene complement(1533. .2612) FT /gene="C1" FT CDS complement(1533. .2612) FT /codon_start=1 FT /gene="C1" FT /product="replication-associated protein" FT /note="rep" FT /db_xref="GOA:Q8JNF7" FT /db_xref="HSSP:P27260" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="UniProtKB/TrEMBL:Q8JNF7" FT /protein_id="AAL05293.1" FT /translation="MAPPKRFQINCKNYFLTYPQCSLTREEALSQLQNLETPTNKKYIK FT VCRELHENGEPHLHVLIQFEGKFKCQNQRFFDLVSPSRAAHFHPNIQGAKSSSDVKSYI FT EKEGDTLDWGQFQIDGRSARGGQQSANDAYAAAINSGSKAEALRVLRELAPRDYILQFH FT NLNSNLDRIFQEPPAPYSSPFLSSSFNQVPEELEVWVSENVMSSAARPWRPNSIIIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPL FT FSSTNQGPTQDSQEETNKA" FT gene complement(2153. .2455) FT /gene="C4" FT CDS complement(2153. .2455) FT /codon_start=1 FT /gene="C4" FT /product="unknown" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q8JNF6" FT /protein_id="AAL05294.1" FT /translation="MGNHIFMCLSNSRGNSSAKISDSSTWYPQAGQHISIQTFRELNPV FT PTSSLTSRRRATPSTGDSFRSMEGLQEGDNNLQTTLTPQQLTLEVRQRLLEYLGN" XX SQ Sequence 2780 BP; 765 A; 546 C; 614 G; 855 T; 0 other; ay044138 Length: 2780 20-JUN-2006 Type: N Check: 4172 .. 1 accggatggc cgcgcccgaa aaaaaaaagt ggcccccacg cacaatttta 51 tgttagccaa tcaaattaca tcatgaaacg ttagataagt attcatttgt 101 ccttatatac ttggtcccca agttgtttgt ccagcaatat gtgggatcca 151 cttctaaatg aatttcctga atctgttcat ggatttcgtt gtatgttagc 201 tattaaatat ttgcaggccg ttgaggaaac ttacgagccc aatacattgg 251 gccacgattt aattagggat cttatatctg ttgtaagggc acgtgactat 301 gtcgaagcga ccaggcgata taatcatttc cacgcccgtc tcgaaggttc 351 gccgaaggct gaacttcgac agcccataca gcaaccgtgc tgctgtcccc 401 attgtcccag gcacaaacaa gcgacggtca tggacataca ggcccatgta 451 ccgaaagccc agaatataca gaatgtatcg aagtcctgat gttccccgtg 501 gatgtgaagg cccatgtaag gtccagtctt atgagcaacg ggatgatatt 551 aagcatactg gtattgttcg ttgtgttagt gatgttactc gtggatccgg 601 aattacccac agagtgggga agaggttctg tgttaaatcg atatattttt 651 taggtaaagt ctggatggat gaaaatatca agaagcagaa tcacactaat 701 caggtcatgt tcttctcggt ccgtgataga agaccctatg gaaacagccc 751 aatggatttt gggcaggttt ttaatatgtt cgacaatgag cccagtaccg 801 caaccgtgaa gaatgattac agggataggt ttcaagtgat caggaaattt 851 catgctactg tcattggtgg gccttctgga atgaaggaac aggctttagt 901 taagagattc tttagaatta acagtcatgt aacttataat catcaagagg 951 ctgccaagta cgagaatcat actgagaacg ccttgttatt gtatatggca 1001 tgtacgcatg cctctaatcc agtgtatgca actatgaaaa tacgcatcta 1051 tttctatgat tcaatatcaa attaataaac attatatttt atatcatggt 1101 tctctgttac atctattgtc ttttcaagta cattatataa tacatgatca 1151 actgctctaa ttacattgtt aatagaaatt acaccaagac tatctaaata 1201 cttaagaact tgatatctaa atactcttaa gaaacgacca gtctgaggcc 1251 gtaaggttgt ccaaattcgg aagttgagaa aacatttgtg aatccccaga 1301 accttcctga tgttgtggtt gaatcttatc tgaatggaaa tgacgtcgtg 1351 gttcattaga aatggcctct ggctgtgttc tgttatcttg aaatagaggg 1401 gattgtttat ctcccagata aaaacgccat tctctgcttg aggagcagtg 1451 atgagttccc ctgtgtgtga atccatggtt gttgcagttg agatggaggt 1501 agtatgagca gccacagtct aggtctacac gcttacgcct tattggtttc 1551 ttcttggcta tcttgtgttg gaccttgatt ggtacttgag aacagtggct 1601 cgtagagggt gacgaaggtt gcattcttga gagcccaatt tttcaaggat 1651 atgttttttt cttcgtctag atattcccta tatgaggagg taggtcctgg 1701 attgcagagg aagatagtgg gaattccccc tttaatttga atgggcttcc 1751 cgtatttagt gttgctttgc cagtcccttt gggcccccat gaattccttg 1801 aagtgcttta aataatgcgg gtctacgtca tcaatgacgt tgtaccacgc 1851 atcattactg tacacctttg gacttaggtc tagatgtcca cataaatagt 1901 tatgtgggcc tagagaccta gcccacattg ttttgcctgt tctgctatca 1951 ccctcgatga taatactatt aggtctccat ggccgcgcgg cggaagacat 2001 gacgttctcg gacacccata cttcaagttc ctctggaact tgattaaaag 2051 aagaagataa aaaaggagaa ctataaggag ccggaggctc ctgaaaaatt 2101 ctatctaaat tactatttaa attatgaaac tgtaaaatat aatctctggg 2151 ggctaattcc ctaagtactc taagagcctc tgccttactt ccagagttaa 2201 ttgctgcggc gtaagcgtcg tttgcagatt gttgtccccc tcttgcagac 2251 cttccatcga tctgaaactg tccccagtcg agggtgtcgc cctccttctc 2301 gatgtaagac ttgacgtcgg aactggattt agctccctga atgtttggat 2351 ggaaatgtgc tgccctgctt ggggatacca ggtcgaagaa tcgctgattt 2401 tggcacttga atttcccctc gaattggata agcacatgaa gatgtggttc 2451 cccattctcg tggagttctc tgcaaacttt gatgtatttt ttatttgttg 2501 gggtttctag gttttgtaat tgggaaagtg cctcttctct tgttaaggag 2551 cactgaggat atgtgaggaa ataatttttg caatttattt ggaaacgctt 2601 agggggagcc atatggtcaa tgagtaccga ttgaccaaga tttgcactta 2651 tcccttgtat atcggtactc aatatatagt gagtaccaaa tggcactttg 2701 gtaatttggt aaaagcatat tgcaattcaa aattcaaatt tgaaaaatca 2751 aatcattaaa gcggccatcc gtataatatt