Sequence of DPV Ophiostoma mitovirus 3a
Sclerotinia homoeocarpa mitovirus RdRp-like protein gene, complete cds.
ACC No: AY172454
Dated: 2003-01-19 | Length: 2632 | CRC: -552346592
!!NA_SEQUENCE 1.0
ID AY172454 standard; RNA; VRL; 2632 BP.
XX
AC AY172454;
XX
SV AY172454.1
XX
DT 19-JAN-2003 (Rel. 74, Created)
DT 19-JAN-2003 (Rel. 74, Last updated, Version 1)
XX
DE Sclerotinia homoeocarpa mitovirus RdRp-like protein gene, complete cds.
XX
KW .
XX
OS Sclerotinia homoeocarpa mitovirus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Narnaviridae;
OC Mitovirus.
XX
RN [1]
RP 1-2632
RA Deng F., Xu R., Boland G.J.;
RT "Hypovirulence-associated dsRNA in Sclerotinia homoeocarpa is conspecific
RT with Ophiostoma novo-ulmi mitovirus 3a-Ld";
RL Unpublished.
XX
RN [2]
RP 1-2632
RA Deng F., Xu R., Boland G.J.;
RT ;
RL Submitted (04-NOV-2002) to the EMBL/GenBank/DDBJ databases.
RL Environmental Biology, University of Guelph, Guelph, ON N1G 2W1, Canada
XX
FH Key Location/Qualifiers
FH
FT source 1. .2632
FT /db_xref="taxon:217362"
FT /organism="Sclerotinia homoeocarpa mitovirus"
FT /specific_host="Sclerotinia homoeocarpa (isolate Sh12B)"
FT CDS 272. .2434
FT /codon_start=1
FT /note="RNA-dependent RNA polymerase"
FT /transl_table=4
FT /product="RdRp-like protein"
FT /protein_id="AAO21337.1"
FT /translation="MMKRLTLLQNKSNQLTNNDLSNVGYITMKLFPHWIRLLVWSLQLS
FT PAPYKKFGSRIAVLWKANGVSFTVQYLKECTRIVQHFVSGHPVFVTDVMPIGLAGGLPT
FT IIPGTLRTLLRSKDPSTIRGVLSTLAVYRIMKMPCKLKLESITDPFKGISDTLPKHEVI
FT NGLAALGLETPKGKSKHRLTLTNPIIYLLSAGPNHSISMMGIWKDIYAWYISPLFPTLL
FT SFIGRMNRGNVLIDLLRSEVSHWEATGVKPSVSPLELKLGKLAIKEEAAGKARVFAMAD
FT SITQSVMAPLNSWVFSKLKGLPMDGTFNQQAPLNRLVQLYKEGLLHDVEFYSYDLSSAT
FT DRLPMAFQKQIISVLFGSDFADDWATLLVGRDWYLKDIPYRYSVGQPMGALSSWAMLAL
FT SHHVIVQIAAMRVGKLSFTNYALLGDDIVIADKAVATSYHMIMTQILGVEINLSKSLVS
FT SNSFELAKRLVTMDGEVSAVGAKNLLVALKSRWGISSVILDLYNKGLALSEQDLRQRFS
FT SIPTVSKQFGVDKLLWLVLGPFGFIPSKDGLSAFMKLNRSLSLVDMHILLSCVDEAKFD
FT LDKKTWEANIQETVHTLLRFGMLSEPAGFEVFSDFTSSPLYSFIRGQFDNKLSTLVQDK
FT PVRRLIFDGPPLHFTFYTENWCDGLMEHLTKKIQSDSQETVFPSNPFKDDKVILPLRGN
FT NKGISFFKHVLALMAERDPATVMRWM"
XX
SQ Sequence 2632 BP; 797 A; 502 C; 525 G; 808 T; 0 other;
AY172454 Length: 2632 January 23, 2003 09:15 Type: N Check: 5234 ..
1 ggggagtata gcttaagcta tactcaagga ctaagtcctc cctcagagaa
51 ttacacccct ctgagatggg tggaaacttg tttatacttt cgctatagct
101 atacgcgtat agggcagtac cttccccgcc gtgcgatcga ctaacttaaa
151 tgttagtgaa ctcacaaata aagaatgttt accagttctt tatggcgatt
201 ccctgtaaga taccttactt tagtagtaag tgtgtcttcc atcggttaaa
251 tatttaaata aacataaaac catgatgaaa agactaacac tattacaaaa
301 caagagtaat caacttacga ataatgactt atctaatgtt ggatatataa
351 ctatgaagtt atttccacac tggataagat tattagtatg aagtttacaa
401 ttgtctcctg ctccgtacaa gaagttcgga tcgagaatag cagttctttg
451 aaaggctaac ggtgtttctt tcaccgttca gtacttaaaa gaatgtacta
501 gaatcgtcca acacttcgtg tcgggccacc cggtattcgt cactgacgta
551 atgccgattg gtctagctgg aggacttcca acaataatac ctggaacctt
601 gagaactctt ttgagatcta aggatcctag tactataagg ggagtcttgt
651 ctaccttggc agtttataga ataatgaaaa tgccttgtaa acttaagtta
701 gagtctatca ctgatccttt taaagggatc tctgatactc ttcctaagca
751 tgaggtcatt aacggattag cagcattagg tcttgaaacc ccgaagggga
801 aatcaaagca ccgtttgact ttaactaatc ctatcattta tctattgtcc
851 gccgggccaa atcactctat atcaatgatg ggtatctgaa aagatatcta
901 tgcttgatat ataagtccgt tattccctac tcttctatcc tttattggaa
951 ggatgaatag aggtaacgtt cttattgatt tgctaagatc cgaagtctct
1001 cactgagagg caacaggggt taaaccctct gttagcccct tagagttgaa
1051 actaggaaaa ctagcaatca aagaggaagc agccggaaag gctagagtct
1101 tcgccatggc ggattccatt acacaaagtg taatggctcc actgaatagt
1151 tgagtcttta gtaaattaaa gggccttcca atggatggaa ccttcaatca
1201 acaagctcca ctaaacagat tagtccaact ttataaagaa ggacttctcc
1251 atgacgtaga attctattct tacgatctga gttctgctac cgatagatta
1301 cctatggcct ttcagaagca aattatatcc gtattattcg gatctgattt
1351 tgctgatgat tgagctactc tccttgttgg gagagactgg tatcttaagg
1401 atattcctta tagatattcc gttgggcaac ctatgggagc cttatcatca
1451 tgagcaatgc ttgcattgtc tcatcatgta attgtacaaa tagccgcaat
1501 gagagtcggt aaactctcat tcactaatta tgcattactt ggcgatgata
1551 ttgtgatagc cgataaggct gtcgcaacat cttatcacat gataatgact
1601 cagatacttg gggttgaaat caacttatcc aaatcacttg tctctagtaa
1651 ctctttcgag cttgctaaga gattggtgac tatggatggg gaagtttcag
1701 ctgtgggagc taagaattta ttagtagctc taaaatctag atgaggaatc
1751 tcatcagtga ttttagacct gtataataaa ggattagcac tttccgaaca
1801 agatctaagg caaagatttt catctatccc tactgtttca aaacagtttg
1851 gggttgataa acttctttga ctagttcttg gtccgtttgg ttttatccca
1901 tctaaagatg gtctatcagc tttcatgaag ttgaatagat cactctcttt
1951 agtagatatg catattttgc tatcttgtgt tgacgaagct aagtttgact
2001 tagataagaa aacatgagaa gctaatatac aggagacagt ccatacctta
2051 ttaaggtttg gaatgttatc tgaaccagct ggctttgaag tctttagtga
2101 cttcacttct tcaccgttat actcctttat aagaggacaa tttgataaca
2151 aattgtctac tcttgtgcag gataaaccgg tgagaaggtt aatctttgac
2201 gggccaccat tacacttcac tttctataca gaaaattggt gtgatggttt
2251 aatggaacac ttaactaaga aaatccaatc ggattctcaa gagacagtgt
2301 tcccatctaa cccgttcaag gatgataagg tcatcttacc attaaggggg
2351 aacaataaag gaatttcttt ctttaaacat gttctcgcct tgatggcaga
2401 aagggatcca gctacagtaa tgagatgaat gtaaatcatt catatccttc
2451 accgtagggg cggattagta tccaatacac ataggggtaa cctatatgtg
2501 gggaaactac gcttaaagaa taccttggct ttcaaatatg actactcctt
2551 ttaatacatg ggcccgataa accaggggga ggatgatggg taaaaggtcc
2601 attggaaagc ttagttatat ctctaagccc cg