Sequence of DPV Potato mop-top virus
Potato mop-top virus isolate 54-15 coat protein and readthrough coat protein genes, partial cds.
ACC No: AY196094
Dated: 2004-12-20 | Length: 2614 | CRC: 616185311
!!NA_SEQUENCE 1.0
ID AY196094 standard; genomic RNA; VRL; 2614 BP.
XX
AC AY196094; AF487409;
XX
SV AY196094.2
XX
DT 25-FEB-2003 (Rel. 74, Created)
DT 20-DEC-2004 (Rel. 82, Last updated, Version 3)
XX
DE Potato mop-top virus isolate 54-15 coat protein and readthrough coat
DE protein genes, partial cds.
XX
KW .
XX
OS Potato mop-top virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Pomovirus.
XX
RN [1]
RP 1-2614
RX PUBMED; 12828342.
RA Cerovska N., Moravec T., Rosecka P., Filigarova M., Pecenkova T.;
RT "Nucleotide sequences of coat protein coding regions of six potato mop-top
RT virus isolates";
RL Acta Virol. 47(1):37-40(2003).
XX
RN [2]
RP 1-2614
RX PUBMED; 15284485.
RA Pecenkova T., Moravec T., Filigarova M., Rosecka P., Cerovska N.;
RT "Extended sequence analysis of three Danish potato mop-top virus (PMTV)
RT isolates";
RL Virus Genes 29(2):249-255(2004).
XX
RN [3]
RP 1-2614
RA Cerovska N., Moravec T., Pecenkova T., Vlcek C.;
RT "The nucleotide sequence of readthrough region of coat protein gene of PMTV
RT isolate 54-15";
RL Unpublished.
XX
RN [4]
RP 1-2614
RA Moravec T., Cerovska N., Nielsen S.L., Vlcek C.;
RT ;
RL Submitted (22-FEB-2002) to the EMBL/GenBank/DDBJ databases.
RL Virology, Institute of Experimental Botany, Czech Academy of Sciences, Na
RL Karlovce 1a, Prague 6 16000, Czech Republic
XX
RN [5]
RP 1-2614
RA Cerovska N., Moravec T., Pecenkova T., Vlcek C.;
RT ;
RL Submitted (12-DEC-2002) to the EMBL/GenBank/DDBJ databases.
RL Virology, Institute of Experimental Botany, Czech Academy of Sciences, Na
RL Karlovce 1a, Prague 6 16000, Czech Republic
XX
RN [6]
RC Sequence update by submitter
RP 1-2614
RA Cerovska N., Moravec T., Pecenkova T., Vlcek C.;
RT ;
RL Submitted (06-OCT-2003) to the EMBL/GenBank/DDBJ databases.
RL Virology, Institute of Experimental Botany, Czech Academy of Sciences, Na
RL Karlovce 1a, Prague 6 16000, Czech Republic
XX
CC On or before Oct 6, 2003 this sequence version replaced
CC gi:27573533, gi:28542761.
XX
FH Key Location/Qualifiers
FH
FT source 1. .2614
FT /country="Denmark"
FT /db_xref="taxon:37128"
FT /mol_type="genomic RNA"
FT /organism="Potato mop-top virus"
FT /isolate="54-15"
FT CDS <1. .2458
FT /codon_start=2
FT /db_xref="GOA:Q80PW7"
FT /db_xref="UniProt/TrEMBL:Q80PW7"
FT /note="readthrough region; cp"
FT /transl_except=(pos:509. .511,aa:OTHER)
FT /product="readthrough coat protein"
FT /protein_id="AAO42618.2"
FT /translation="RRAAVENRYDAWDHEQAMKAAVRKFISYDQFSAQLRNWREARLNI
FT IEHATSVLSQVSNLGRTHFYSRTERFGGSSIVGDKLYVCLNETRMKTALNNIIVALQTV
FT NGEGRARRLCPREASANTGGEDSALNVAHQLAEVDDLLTDESFLREAVFTQDKYELVNG
FT LRWAGAXQLTAQAFWFDVNAAIDEIDNRLLAAAALRLLPGQANHVDGLVSINYAQLDRA
FT LSVVGGNILPQTLEITRDERKRQLPEVRVIDGERVTIRNKDEATVIRNHGQGLPWLLAF
FT LLLLLSVVVVYSTIYLNDWLYRLSVVRHGKPGGGAARKLSGMSDWLCSRLRARGALNVN
FT RMRKKQACDPSPTGLRKFLTCYNFSYELWDPTGSYDDAQRRIIAEQNSFVEAVRAIDEG
FT DRELAEACLTNVRRILRRHLNYRPDYFDIIEAKAVYLVTVLTNAMSGPVVGVDDDERRA
FT VVAAFNPSDCGLPNLDSCSLDEIKNFDLSEVVIGEGTNVEQARGYLNLCRNIQCMIETI
FT GTVQFLGVLSSYTGPQYPCISQAFAEDKRIRKERLKDKDNITTADIIAYLVSGVMAAYA
FT LVAVSKGGITLFKFMKNYAGGGGDGPGSSRRIRQLEAALPSLPQPEELTMMERLRRLQS
FT SDNDLALRRNPSDMLSQVVRDVVADVDSSDIAEFLNDPARMTEAALEIRLTRIMSAEGS
FT PVDVIEPGGQELISMQVHGESLTVINAGTDSPTVIRSASLSTRHRSSGIEIGSFAVDKV
FT LPYEVEGENDDHGDAGKKPTVAQALMIGGGAVKGQGNLGVTNGKELLKVLGSSRSIGKM
FT SGKMAV"
FT CDS <1. .511
FT /codon_start=2
FT /db_xref="GOA:Q772M4"
FT /db_xref="UniProt/TrEMBL:Q772M4"
FT /product="coat protein"
FT /protein_id="AAL92111.3"
FT /translation="RRAAVENRYDAWDHEQAMKAAVRKFISYDQFSAQLRNWREARLNI
FT IEHATSVLSQVSNLGRTHFYSRTERFGGSSIVGDKLYVCLNETRMKTALNNIIVALQTV
FT NGEGRARRLCPREASANTGGEDSALNVAHQLAEVDDLLTDESFLREAVFTQDKYELVNG
FT LRWAGA"
XX
SQ Sequence 2614 BP; 698 A; 475 C; 746 G; 695 T; 0 other;
AY196094 Length: 2614 January 4, 2005 08:57 Type: N Check: 5007 ..
1 gcgaagagca gccgtcgaga atagatatga cgcttgggac catgagcagg
51 ccatgaaggc tgccgtgagg aagtttattt cttacgatca attctcagct
101 cagttaagaa actggcgcga agctaggtta aacataattg aacatgccac
151 tagcgtgttg agccaggtgt ctaatttagg tagaactcat ttctacagta
201 gaaccgaacg ctttggtgga agttcaattg ttggtgataa attgtacgta
251 tgtctgaatg aaaccagaat gaaaaccgcg ttgaataata taattgtagc
301 gttgcagaca gtgaacggcg aagggcgggc aagacgatta tgtccgagag
351 aagcttccgc gaacaccggc ggggaggata gcgctctgaa tgtggcacat
401 caactcgcag aggtggacga tttattaact gatgaaagtt ttttgagaga
451 agctgttttt actcaggaca aatatgagct cgtgaacggg ttacgctggg
501 ctggtgcata gcaattaacc gctcaggctt tttggtttga cgtcaacgcc
551 gctatcgacg aaattgataa tcgactgcta gcggcggctg cgttaagact
601 attgcctggg caggcaaatc acgtggatgg tctagtgtct ataaattacg
651 cacaattgga tagagcattg agtgttgttg gtgggaatat tttacctcag
701 acgttggaga taactcgtga cgaaagaaaa aggcaattac ctgaggtcag
751 agttatcgac ggcgagcgtg tcactattcg taacaaagat gaggcaacgg
801 tcattagaaa tcatggtcag ggacttcctt ggctattagc gtttttactg
851 ttgttgttat ctgttgtggt ggtgtattct acaatatacc tgaacgactg
901 gttgtatcgg ttaagtgtgg taaggcatgg gaaacctggc ggtggtgcag
951 ctcgtaagct gtcgggtatg tcggactggt tgtgcagtcg cttaagggcc
1001 agaggcgctt tgaatgtgaa taggatgagg aagaaacaag catgcgatcc
1051 gtcgcccact gggttgcgga agttccttac ttgttataac ttttcttatg
1101 aactttggga tcctactggt agttatgacg atgcgcagcg gagaattata
1151 gcggaacaga actcatttgt ggaagccgtg agggccatag atgaaggtga
1201 cagggagttg gctgaggcgt gtttgactaa tgttagacgg atcctcagga
1251 ggcatcttaa ttaccgacct gattattttg atattattga agcgaaggcg
1301 gtatatttgg tgacagtgct gacaaacgca atgtcggggc cagttgttgg
1351 cgttgacgat gacgagcgga gagcggtggt agccgcgttt aatccgtcag
1401 actgtgggtt accgaatttg gatagttgct ctttggacga aatcaagaat
1451 tttgatttgt ccgaagtggt gatcggtgag ggtaccaatg ttgaacaagc
1501 aagagggtat cttaatctct gtagaaatat tcagtgtatg attgagacaa
1551 ttggcaccgt tcaatttctt ggtgtgttgt cgtcgtatac aggtcctcag
1601 tatccttgta tatcccaagc ttttgctgag gataagagga taagaaaaga
1651 gaggctgaaa gataaggaca atataacgac agcggatatt attgcctatt
1701 tggtgagtgg ggtaatggca gcctacgctc ttgtggcagt aagtaaagga
1751 gggatcacac tgtttaagtt tatgaagaac tatgcgggtg gaggtggtga
1801 cgggcctggt tcaagcagaa gaataagaca attagaggcc gctttaccct
1851 cccttccgca gccagaagaa ctgaccatga tggaacgttt gagaagactt
1901 caatcttccg ataacgattt agctttgaga aggaacccgt ccgatatgct
1951 tagtcaggtc gtacgtgacg ttgtagccga tgtagactcc agcgatatcg
2001 ctgagttttt gaatgatcct gctaggatga ccgaagcggc tctggagatc
2051 cgactgacca gaataatgag tgctgaaggt tcaccggtgg atgtaattga
2101 gccagggggc caggaactta tttccatgca agtgcatgga gaaagtctaa
2151 ccgtcataaa tgccggcacc gactctccca cagtgatcag atccgcgtcc
2201 ttgtcgacgc ggcaccgtag ttctggtata gaaatcggtt cttttgcagt
2251 ggataaagtg ctgccttacg aggtggaagg cgaaaacgac gatcatggtg
2301 acgccggtaa gaagcccact gtcgcccaag ctttgatgat tgggggtggt
2351 gcggttaagg gacagggtaa tttgggtgtt actaatggca aagaactctt
2401 gaaggtatta ggtagctctc gatctatagg gaagatgtca ggtaagatgg
2451 ctgtttaaac cgagtgcgtg tgacgggttt acctctctaa aagtcacacc
2501 gtggatacta cgacaagtat cagtgcttac aggacttatg tctgtggttc
2551 acttaaatcg aaccattgga gcaatccaac gttaatacta cgttaagtat
2601 tagtgcttac aggg