Sequence of DPV Potato mop-top virus
Potato mop-top virus isolate 54-15 RNA-dependent RNA polymerase gene, complete cds.
ACC No: AY196959
Dated: 2004-12-20 | Length: 5589 | CRC: -934170207
!!NA_SEQUENCE 1.0
ID AY196959 standard; genomic RNA; VRL; 5589 BP.
XX
AC AY196959;
XX
SV AY196959.3
XX
DT 03-MAR-2003 (Rel. 75, Created)
DT 20-DEC-2004 (Rel. 82, Last updated, Version 5)
XX
DE Potato mop-top virus isolate 54-15 RNA-dependent RNA polymerase gene,
DE complete cds.
XX
KW .
XX
OS Potato mop-top virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Pomovirus.
XX
RN [1]
RP 1-5589
RX PUBMED; 15284485.
RA Pecenkova T., Moravec T., Filigarova M., Rosecka P., Cerovska N.;
RT "Extended sequence analysis of three Danish potato mop-top virus (PMTV)
RT isolates";
RL Virus Genes 29(2):249-255(2004).
XX
RN [2]
RP 1-5589
RA Pecenkova T., Cerovska N., Moravec T., Vlcek C.;
RT "The partial nucleotide sequence of RNA1 of PMTV isolate 54-15";
RL Unpublished.
XX
RN [3]
RP 1-5589
RA Pecenkova T., Cerovska N., Moravec T., Vlcek C.;
RT ;
RL Submitted (14-DEC-2002) to the EMBL/GenBank/DDBJ databases.
RL Virology, Institute of Experimental Botany, Na Karlovce 1a, Prague 6 16000,
RL Czech Republic
XX
RN [4]
RC Sequence update by submitter
RP 1-5589
RA Pecenkova T., Cerovska N., Moravec T., Vlcek C.;
RT ;
RL Submitted (29-AUG-2003) to the EMBL/GenBank/DDBJ databases.
RL Virology, Institute of Experimental Botany, Na Karlovce 1a, Prague 6 16000,
RL Czech Republic
XX
RN [5]
RC Sequence update by submitter
RP 1-5589
RA Pecenkova T., Cerovska N., Moravec T., Vlcek C.;
RT ;
RL Submitted (01-OCT-2003) to the EMBL/GenBank/DDBJ databases.
RL Virology, Institute of Experimental Botany, Na Karlovce 1a, Prague 6 16000,
RL Czech Republic
XX
CC On Oct 1, 2003 this sequence version replaced gi:34333913.
XX
FH Key Location/Qualifiers
FH
FT source 1. .5589
FT /country="Denmark"
FT /db_xref="taxon:37128"
FT /mol_type="genomic RNA"
FT /organism="Potato mop-top virus"
FT /isolate="54-15"
FT /segment="RNA1"
FT CDS 75. .3986
FT /codon_start=1
FT /db_xref="GOA:Q80A46"
FT /db_xref="UniProt/TrEMBL:Q80A46"
FT /note="RdRp; putative"
FT /product="RNA-dependent RNA polymerase"
FT /protein_id="AAO45180.2"
FT /translation="MDQSILSKITSDDYVNAILHTSATRVGSDLHNAMCNVIVDQIKDS
FT TEKNKKKKKIDVKRNLNEDQIQLLAELFPERRVVTSSVHRGTHSMAAAMRKIETDVIFT
FT SFPKNGVIYDIGGNWATHAKRDDGGFVHCCCPILDFRDAQRKMTRLIDFNRFIDDAKVV
FT SAEKAAVAAQIKKDCDLISENAKKDAYDANDLNGTWFCQNKFEDCVYDHSTLGDGKKEA
FT YGMAIHSIYDIHLVDLVSAMERKKMRVLKGTFLFSADIIIGKKRGELPSVNGFYIIDGE
FT SIKYSFYDDPNCGYEHNLNSLMLYVTKTFVKAAGGAVYYLELTEMRGDTMFFTITDASE
FT ARVMGVLHDSSTKCLPLNKRDLVVFPLFDIDRATDELVFREELLSREFVNRALEYAFRL
FT KDNQVTAEGLISYFASTNNAVVIGGSARKTSEKVDPKLLPMITTTLMVYQELQKAKQKR
FT VLGKLKSKVKEELTLSGILESVVHRVFGSQSLYQRGLGVFAKWMQYSYGQDLVGIHDVP
FT LYLEINDRIKLGSALKNVNGFSLSFSELDEKVSLYEEYERERQRISDEIVSEKIGLIGE
FT GYVKVGESSLKPKQKVASRDGMAQWVSGECHLYNTMKCEEKPVEKPRRFSKVVLEEWIS
FT EGNCFALNNSFGDEVHWFDSLKEACGRAWRKQVSAVTFSDAEYFDNIENTENEELEEEE
FT VIKTTEQVEQDWPIGNLPDVDPDDSASAQVCLTESASTSSDEDCDPMEQLIVAACERAL
FT ATKKFEEVTMDSQVVQSEEIEIVREGEHAHANLSSGESESSSQSQELVAVGSVPLSKWA
FT QMVEDSEVRARQCAVDHDLSWDEVKYAKMPERPEEAEGDDFRTKAKREFLWYLKCKLVA
FT DKSTLVEIMRDFIYGQFHSGACETPKNACFLSYEKNVCGEWMFGKRYRHPSKGASSYAV
FT RFTREDWKRAKLIKLQWKNAKAEENGEMSSDNSDKPIVPQGETGIYLFCDITFLMNEIP
FT ILNRLEISFKKRVQRRAPRITLVDGVPGCGKSTYVVKEANLVNQYVVTIGREAAEDLRE
FT RFKSERNATATQLKRVRTVDSYLLNDTQSRANVLHFDEALMAHAGMVYFCADDLSARSV
FT ICQGDSQQIPFINRVESITLRYSKLEIDNVVEKRLTYRSPLDVASYLTKKNFYGTSVVT
FT SANPLVRSLKTVGPRDGMTSIYSIPKIPGTQYLTFLQSEKEEMRQYLGRGNWNVNTVHE
FT SQGKTYDNVVLCRLKATDNEIYPGGRNSSPYMVVGVTRHRRSLVYYTKAEDKLYFDLAE
FT MLSVQEGKLMKHLHEEGVK"
XX
SQ Sequence 5589 BP; 1679 A; 834 C; 1476 G; 1600 T; 0 other;
AY196959 Length: 5589 January 4, 2005 08:57 Type: N Check: 6440 ..
1 tggttggaga ccagtgattt tgaagcgacc gcttgcgata aaacgtttca
51 aaaaatttgc tgttgttata ttcaatggat cagtctattt tgagtaaaat
101 caccagtgat gattatgtga atgcgatact tcacactagt gctactagag
151 tgggttcgga tttacataat gctatgtgta atgtaatagt agatcagata
201 aaagatagta cagaaaaaaa caaaaagaaa aagaaaatag atgtaaaaag
251 gaatcttaat gaggatcaga tacagttgct tgctgaactt tttcctgaaa
301 gaagagtggt gacatcttca gtgcacagag gtacgcacag catggctgcg
351 gccatgagaa agatagaaac cgatgttatt ttcacctcgt ttccaaagaa
401 tggagtgata tatgatattg gtggaaattg ggcgacccac gccaaacgag
451 atgatggtgg ttttgtgcat tgttgttgtc cgattctcga ctttcgtgat
501 gcgcagagaa aaatgacaag attgatcgat tttaatcggt ttatcgatga
551 tgctaaagtg gtgagcgctg aaaaagctgc agtagcggcc cagataaaga
601 aggactgtga tcttataagt gagaatgcga agaaagatgc ttatgatgcc
651 aatgatctta atggaacttg gttttgtcag aataagtttg aggattgtgt
701 atacgatcac agcactcttg gagatgggaa aaaagaggcc tatggtatgg
751 cgatacacag catttatgac atacatttgg ttgatcttgt gtctgctatg
801 gaaagaaaga agatgagggt acttaagggc acttttttgt tttctgctga
851 tataataatt ggaaagaaaa ggggtgagtt acctagcgtc aatgggtttt
901 acataattga cggtgagtca ataaaataca gcttttacga tgatcctaat
951 tgtggctatg agcataatct taactcgttg atgttgtatg tgacaaaaac
1001 ctttgtgaaa gctgcaggtg gtgccgttta ttatttggaa ctgacggaga
1051 tgaggggcga tacgatgttt tttaccatca cggatgcttc tgaagcgaga
1101 gtgatgggtg ttttacacga tagctccact aaatgtctgc ctcttaacaa
1151 acgggatctg gtggtttttc cattgtttga tattgacagg gccaccgatg
1201 aattggtatt tagagaagaa ttgttaagca gagagtttgt aaatcgtgct
1251 ttggagtatg cttttcggtt aaaggacaac caggtgacgg cggaaggttt
1301 aatcagttac tttgcatcta ccaacaatgc cgttgtgatc ggcggttccg
1351 ctagaaagac ttctgaaaaa gttgatccta agctgttacc gatgattact
1401 accactctga tggtttacca agaattgcag aaagctaaac agaagagagt
1451 gttgggaaaa ttgaaaagca aagtgaaaga agagttaacc ttgtcgggta
1501 tactagagag cgtggtgcat agagtgtttg ggagtcaaag cctgtatcaa
1551 agaggtttgg gcgtgtttgc taaatggatg cagtacagtt atggtcaaga
1601 tttagttgga attcatgatg tccctttgta tttggagatt aatgaccgga
1651 ttaaattagg gtctgctctg aaaaatgtta atggattttc actgagtttc
1701 tctgaattgg atgagaaagt gagtctatat gaggagtatg agcgagaaag
1751 acaacgaata tcggatgaga ttgtcagtga aaaaattggt ttgattggcg
1801 aaggatatgt gaaagtcggg gagtccagct taaaaccaaa gcagaaagtt
1851 gcgtcccgtg acgggatggc gcagtgggta agtggtgagt gccacttgta
1901 taacaccatg aagtgtgagg aaaaaccagt ggagaagccg aggcgcttta
1951 gtaaagtagt tttggaggaa tggatttctg aaggtaattg cttcgcactt
2001 aacaacagtt ttggtgacga agtgcactgg tttgattctc tgaaagaggc
2051 gtgcgggaga gcatggcgga aacaggtttc ggctgtaaca ttttcagatg
2101 ctgaatattt tgataacatt gagaatactg agaatgagga acttgaggaa
2151 gaagaggtga ttaaaaccac tgaacaagtg gaacaagatt ggccgatagg
2201 taacttgcct gacgtcgatc ctgatgactc tgcttccgct caagtgtgtt
2251 taacggaatc agcttcaact agtagtgatg aagattgtga tcctatggaa
2301 caattgatag tagcggcttg cgagcgagcg ttagcaacca aaaaatttga
2351 ggaagtcaca atggattcgc aggttgtgca aagtgaggaa atagagattg
2401 ttcgcgaagg cgagcatgct catgcaaatt tatcaagtgg tgagtcagag
2451 agttcaagtc aatcacaaga gctggtagcg gtcggtagcg tacctctcag
2501 caaatgggcg cagatggtcg aagactccga ggtcagagct agacaatgtg
2551 cagttgacca cgacctgagc tgggatgagg tgaaatacgc aaaaatgcct
2601 gagagaccgg aagaagctga aggtgatgac tttcgcacga aagcaaaaag
2651 agaatttctt tggtacttga aatgtaagtt ggtggcggac aaatctacgt
2701 tagtggagat tatgcgcgat tttatttatg gtcagtttca cagcggtgct
2751 tgtgagactc ctaagaatgc gtgttttctg tcctacgaga aaaatgtgtg
2801 tggagaatgg atgttcggta aaaggtatcg tcatccttct aagggagcca
2851 gctcttatgc agtaaggttt accagagagg attggaagcg tgctaagttg
2901 ataaagttgc agtggaaaaa tgctaaagct gaagaaaatg gtgaaatgtc
2951 atcggacaac agtgataaac cgatcgtgcc acagggcgag acgggaattt
3001 atctgttttg tgacatcact tttttgatga atgaaattcc gattttgaac
3051 aggctggaaa tctcatttaa gaagagggtg caaagaaggg cgcccagaat
3101 cacactcgtt gatggtgtac ccggatgtgg aaagtcgact tatgtggtga
3151 aagaagcgaa cttagtcaat cagtatgttg tgacaatcgg tagagaagct
3201 gctgaagatc tgagggagag gtttaaatct gagagaaatg ctaccgccac
3251 gcagttgaaa cgtgtgagga ctgtagattc ttatttgctc aatgataccc
3301 aatctcgtgc caatgtgctt cattttgatg aagcgttgat ggcgcatgct
3351 ggtatggtgt atttttgtgc ggatgatttg tctgcaagaa gtgtgatatg
3401 tcaaggtgac tctcagcaga tcccgtttat taatagagtg gagtctatta
3451 cgcttcgata ctccaagttg gaaattgata atgttgtgga aaaaagactg
3501 acttatagat cgcctttgga tgtggcatcg tacctgacta agaaaaattt
3551 ttatggtaca tccgtggtga ctagtgctaa tccattggta aggtcgttga
3601 agaccgttgg acccagagat ggtatgactt ccatttatag cataccgaaa
3651 ataccaggta cccagtattt gacttttttg cagagtgaaa aggaagagat
3701 gcgccaatac ttgggaagag gtaactggaa tgtgaacact gtgcatgaaa
3751 gtcagggaaa aacatacgac aatgttgtgt tatgcaggtt gaaggcgacc
3801 gataatgaga tctaccctgg tggtaggaac tcttcgcctt acatggttgt
3851 cggtgttacc cgtcacaggc gttctttggt gtactacact aaggcagagg
3901 ataaattgta ttttgatttg gccgaaatgt tatctgtgca ggaagggaaa
3951 ctgatgaaac atttgcatga ggaaggtgtg aaatgacgcc aggcgtcaaa
4001 gtatgaggag ataatggtgt ccgataatgc tgtgactgtc cctgatgtgg
4051 gtaatttggt tgatttgcaa gagatgtatg acatagcatt tcccgggaat
4101 tccattattg acacttactt tgacggttat gaagtggcca caggaggtct
4151 gcagatagat atgaatgctt cccttactta ttaccctaac aggcaaatga
4201 aaatgtggaa agagtgccga ggtatgtatc ctatgcttag gacagctatg
4251 cccgagaaaa gacaaagcgg tttggcagaa ggtttgttgg ctttgaacaa
4301 gcgaaatatg gctgcaccta agttgcagga atctgtgaat gagttcgaag
4351 tgattgaaag cacaattgag aaagcaaaaa aggtattctt tgatgagagt
4401 cgtattgata actctaagtt ggaaacattt gaaggtgcgg cgagatggtg
4451 ggtcaaacaa tcttgcacgg cgcaaaagca gatgttagca gatgttagaa
4501 ctctgagtga aatcgatgtg acatcataca attttatgat aaagggtgat
4551 gtaaaaccga aattggactt gtcaccgcag tctgagtatt ctgcgcttca
4601 aacagtagtg taccctgata agattgtgaa tgctttgttt ggaccgataa
4651 tgaaagaaat caatgagaga ataagagttg ctttgaaacc tcatgtgatt
4701 tataacacaa ggatgacgtc tgacgagctg gatgctgcag tggagtttct
4751 tgatgtaaga gaagaccatg agtccgttga gattgatttt tcaaagtttg
4801 ataagtcaaa aacttcgttg catattcggg ttgttattga actttacaag
4851 ttgtttgggt tagatgagat gatcgcttac ttgtgggaga agtcgcagtg
4901 tcagaccacc attaaagata gggtgaatgg tattatagcg cagattcttt
4951 atcagcagaa atcaggtaat tgtgatactt atggttctaa tacttggtct
5001 gccgcattgt cattgttaga gtcactaccc ttggagaaag cgacttttat
5051 gatatttggt ggagacgact ctttaatatt tttcccgaag ggcatggtga
5101 ttgaagatcc gtgtaggaga ttagcttcta tgtggaactt tgattgcaag
5151 ttgtttaatt tcaaaaataa ttcattttgt ggaaaatttt tgataaaagt
5201 gggagaaaaa tacaagttcg ctccggatcc ttataagttg cttacgaaac
5251 tgggcaggaa agacataaaa aattctgatt tgttaagtga gatttttact
5301 tctataggtg ataattataa gtcatatgat gactataggg tgttagaagc
5351 tcttaacgta gcagttatgg aacgttataa gttgcgttgt gatgtcatgt
5401 tcggtttgtt agcgttaaag aaatatataa actcattcga tctgtttgct
5451 tctttgttca gccataaagg caagtaccag cgtgttgaag tgggaagaaa
5501 tttcgagtgg tgatcacgag agatttttaa gatcgaggtg aagccccaca
5551 gttagtattc ttgtcgctgc aaagtgtgaa gcttatttt