Sequence of DPV Citrus tristeza virus

Citrus tristeza virus strain VT defective RNA CTV-L5', complete sequence.

ACC No: AY206452

Dated: 2003-01-31 | Length: 11772 | CRC: -1464161562

                !!NA_SEQUENCE 1.0
ID   AY206452   standard; RNA; VRL; 11772 BP.
XX
AC   AY206452;
XX
SV   AY206452.1
XX
DT   31-JAN-2003 (Rel. 74, Created)
DT   31-JAN-2003 (Rel. 74, Last updated, Version 1)
XX
DE   Citrus tristeza virus strain VT defective RNA CTV-L5', complete sequence.
XX
KW   .
XX
OS   Citrus tristeza virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC   Closterovirus.
XX
RN   [1]
RP   1-11772
RX   MEDLINE; 22089184.
RX   PUBMED; 12093181.
RA   Che X., Mawassi M., Bar-Joseph M.;
RT   "A novel class of large and infectious defective RNAs of Citrus tristeza
RT   virus";
RL   Virology 298(1):133-145(2002).
XX
RN   [2]
RP   1-11772
RA   Bar-Joseph M., Che X., Mawassi M.;
RT   ;
RL   Submitted (22-DEC-2002) to the EMBL/GenBank/DDBJ databases.
RL   Virology, Plant Protection Institute, Agriculture Research Organization,
RL   Volcani Center, Bet Dagan 50-250, Israel
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .11772
FT                   /db_xref="taxon:12162"
FT                   /organism="Citrus tristeza virus"
FT                   /strain="VT"
FT   misc_feature    1. .11772
FT                   /note="defective RNA CTV-L5'; contains intact ORF11"
FT   misc_feature    105. .10784
FT                   /note="similar to replicase genes ORF1a and 1b"
XX
SQ   Sequence 11772 BP; 2766 A; 2395 C; 3112 G; 3499 T; 0 other;

AY206452  Length: 11772  February 11, 2003 08:55  Type: N  Check: 9175  ..

       1  aatttctcaa attcacccgt accctccgga aatcacgtcc ggacgctgcg
      51  ggaatcggtg taaatcccgg caaattgccc actacgccca tacaaacaaa
     101  tatacatgtc gaaactcgga gctcgcttca agtcctcgac tttcgctgta
     151  cgcaggcatt acatcatctc gcgcatctgg cgctttaaca ccgttggagt
     201  cctgcacttc ttcggtactg aaacaaccac caaggtggtt aaggaatttt
     251  cggctcctca gccgatagtc cctctacgga aatcctgttt tccgttttct
     301  gttcgcgctg ctgttcgcgc gattaaagct gccggacgtc ccattgaccg
     351  tccgcgctct ggatgcctct gtggcctccc tgttatcgac acatctggtg
     401  tcgtacgtgc ctctgtcgcg ggcatttgga ggtattctct gtgtaaacct
     451  ccccttactg ccgccgccaa gaagtccatt gccaaggcga agaaagattc
     501  tgctttcttt cttagccggg cttcttcact cttctcacgg gaagtcccct
     551  gcggcacgcg tcatagactt cgtaggcgcg ttatgaaacg agtagaccct
     601  accatgcacg agagtcccca agacgagatc aaacttaagg gacgccgaca
     651  tggcaagaat tcttacctcc cgtatatggg ggaagcggcg ttggatgata
     701  tccttcgctg gattgagggg gtaaatcccc cgccgtcgat ggtcgccatt
     751  ccggtgccca tctctttcgg cgccgtgccc acaacggcat ggtgctctcc
     801  tgttgacgcg gctgttttgc ggtgtcgttt agactaccac gccgctgaga
     851  cttcctttcg tgacgaaagg aagcacgtga gatacgtcta taatgacgtg
     901  tcttctgctg ccaaccgtcc tcgtacggtt tctgccaagt gcgggcgtgt
     951  tttcagcggt tctgcgctgg gtgttgaggt cccgagcact agggatcgcc
    1001  ataccgcttt cgtgagatct actcacgcta gcgttttctt ctcccggagt
    1051  tcgccggttc gcatgttccg tcctgggcgg aataatttct tcactagcgt
    1101  cgttagtggg cggcgcgtta gttactttag acccggacct aatggtacgg
    1151  tgtctgtttt aatgtcggac ggtgtcaaca cggcgcgtct cgacgttgtg
    1201  cctcctggct accatgcgta cgctaaagcg ttaggcgcca aagtgccgtg
    1251  tttgtgggag tcgtccgatt tggacgatgc taagatacgt gacggccagt
    1301  gctacgttcg tcacgtatac gacgtggccc tttacttcgg aaggcgcgtc
    1351  gatctttctg tgcgccgaac tttgggtttg tttcccacag tgggtgcact
    1401  aaaagcttat cttcttcgcg agtacggtcg caactctttg aaggttccga
    1451  tgcgcgggac ttacactttt ggcagtgtgt ttcatagcct gtcgactaaa
    1501  tcttttgtcg acttgagatc tattcctaac catcacttgg ttggtggtgc
    1551  gtctgctcac gtgtttattg ggcagattcg tgttgacgtt cctggtggtg
    1601  tctctaagcc atcacgagca gctgcgcagg cgaataggcg tttgcgtgaa
    1651  gacgggtttt taggtagtac cgattcgtct tcttcaggag ggtcgagata
    1701  ctgttcggat tgttcaactc ctcgcagtcc accctctccg tcgattgttg
    1751  gaccaactct tggccggata ccaagtataa accggaagtt ccggtttcca
    1801  gcaggcactc agttgagtgt ttctatccct aaacgcaacg atgatcgcgt
    1851  gtatgtatcg gtcggccaag actttgatga gttgtgccat gccgtgtgta
    1901  cctacgttaa gaggtacaac tcgagaaaag cattttacac gcggtttgaa
    1951  aatggtgatg atttcgccgt cattgctgcg gcttccgtcg gaggtcttca
    2001  cgtgttcgtg aaacgcggta actttacggc tcggttccct atgtcggctt
    2051  caaggtatga gcatcattat gatcgaagta tgaaaggcgc cggtttgtcg
    2101  tgggtgcgga agagtcggtt tccgaatgtt gaagttatac gccgtcgaag
    2151  gagtcggacg ggcggttctt tggctagctt tccggacgcg aatttacgga
    2201  ttaattctga ccaaccgtcg gattctgttc aggcagttcc ggtgtcaggt
    2251  gagaattctc catcgtctcg aggagcgtct tcgccccgac gtgatcctgt
    2301  tgaagggtcg ggctggtata aggtgggttc tcctagtcac cactcgagtg
    2351  ccgctcgtgg gcaacgttcc actgaacgtg ggaagattgg ggatttcagt
    2401  tttccgagta gcaccgtgta taatgcacat gtagacgagc gtgcttataa
    2451  gcgtgtgttg aaattgcggg acacgtcggc gtcctttttt cttcgtatag
    2501  ttttggctcg tttgtcgagt tatcggcctc ttagtgacga gttctttaac
    2551  aagtgcgtta cttctcggtt cgtagcttgt atcgaggcgg ttgaatcggg
    2601  tctcgttaca gtacactttc gatccgacgt gtttcgcgcc tcgttcccgt
    2651  ttggagttta tttgtatact cgtcacgcgt ttgatattta cagtggtaag
    2701  ctcctgcaac tagatagcta cgggttctcg gaagacctga aggacggtta
    2751  ctgctatatt cgtcatatcg ctgaggtctg tttgagtatg ggaaaagttt
    2801  tctttaggag ggacgttaac ttaggggcgt tcccttatgt tttcgaggta
    2851  cagcaccgtc ttgagcggtt gtacggtaag cgggctgttg aatacggcgt
    2901  tagaggttat ttttcagcaa cgcgtcttta ccactgttgc tttaccgatt
    2951  cgccgagacc cttcaaatct ttaaataagt atcataagat gggtggtgaa
    3001  gaaggtgcgt tattaatcac tgacactgat agattacgtg ccgtggggag
    3051  tgcttacgaa aaggtgaagg ggcgtttgcc tgattcttta cttgttcgat
    3101  cggtggagaa agatttgata gaattcaatc aaactctggt tgatacgcaa
    3151  cgggctagac ctggtgttgc agtacctttt cagatgagtg agaaccaaca
    3201  ggtgatgctc actagagctt atcctgagtt taatataaac tttactcatt
    3251  ccgtacactc cgatcacccc gtggctgcgg gttctagaat gttagagaat
    3301  caccttgttc gtaaatacgc aggtagcgat tattcggacg taggtggttg
    3351  cccattattt catttacgtg cgggtcatac aggagttcac gtttgcagac
    3401  cagtgtacga tattaaagac gcccaccgta gagtcgttcg tcatcatcaa
    3451  cttagtaaag tagcttttga tcacactgac gggtctaagc aggttggtgc
    3501  tgtcaatacg aacaccgtgt gtggtaacgt tttaggggag tgttttcatg
    3551  cgtctgatgc gattgttatg gtgcaagttt atgacgtgcc attgcgagag
    3601  ttgtgtagag ctatggtgaa caagaaagct tcggtgtgct atatgaccgt
    3651  ggttacgcct ggtgagctgt tggacgcctg tgagtccttc ttcatcaaag
    3701  agttagactg ttcggtggag ttggaccggt cgccgaatag ggttatctac
    3751  tgttttaaca attcacggta tacgcatacc tattctacga tatgcgaata
    3801  catgcgtact ccttgtgtgg tggtggatgg ttttctgttc actatagaga
    3851  tggtttcact cagatgcaga gttaactatt attgtatcac caagtcgcgg
    3901  gtttgtccga gaatcagcga gattaaacgg ttacgctatc gtcggtgtga
    3951  tagtgacttg atcaggatca agattccgcg gtactctaat aagactcgta
    4001  gttgtttacc agggtgttat tatttgtatt tagacgctaa gttcgtgagt
    4051  cgtgtgtacg aatacgtggt taataattgt gttgtggtga atgctaagac
    4101  ttttgaatgg acttggaact acattaagtc ctgtaagtcg agggtggtca
    4151  tcagtgggaa gattatccat agggacgttc ctattgggtt ggagtatttg
    4201  gatgggtttt ccgcagttat gttgtccgcg ggcgtgaaag gtaggcagaa
    4251  cgcagaaacg ttttctaggc gtctacgggc cttttcaggc gacccttctc
    4301  ttttcgaatt ggtgaggttc gccatttcag agaagtgtcg cgatttattt
    4351  gtgggcgttc aggaggccgt agagagatac gtgaaatcgt acctcagaaa
    4401  ctcgtttaat ataagtttcg cggacttgtc agatccgttg cttaccatta
    4451  gtgagtattc ggagttagac gttcctatcg atttgccggg ttttggctgc
    4501  ataacggaag gagatgaggc taaactcata gaagatgggg ttaagtcggc
    4551  tttactgcga aaagcgttcg tgacgaggcc gcaactcatt ctcgaaaggg
    4601  gcggtacgtc agagatcgtt ccttgtgggg atgatgatgg tttaggcagc
    4651  gacggttctg acagtttact cgggtccggt agtgattcgt cttctaaggc
    4701  cagtcctggt ggtttgcggg ccgggcgccc ttcactgttc agaagcttgt
    4751  tgaagaagtt gggtgggggt ttttgtatgg ccaagaggtt attggacttg
    4801  ttgtgcgagc gattagttgg ttcgttgtcg cgctttaagt tcggtaccac
    4851  tcatttaacc tcattcttta gcatgttaca cgctaagctt tcgcgtaatt
    4901  tcttcgacga ctcgattttt accgctgttt gggacgtggt gatgaatttg
    4951  attagaatcg tcaacggggt gaccaggacg aaattggagt gttttcgcaa
    5001  tgttcttcgg ttaattccta cgttgtgttc tggttgtaag gacttcgcaa
    5051  aagactttgc aaacatgtgt aggttagttt tgccattttc tacggagttc
    5101  ttcagtaaaa gctatactcc cctgtgtcgg tttagtttgg atgtattcga
    5151  tgtcggactg attgagattt cagcgcgtaa catgggacta gagacttgtg
    5201  tttcgatggc ttcagccatt tttaacgtcg tacttaccta tcctctggga
    5251  agtattagct ttcccgtcgt atgcgcgaga gtttttggcg ccctcgctat
    5301  ggaagtggga tcaaactatt gttttaagaa aagtttcggc aaacctgaaa
    5351  ttttaggaga ggacgctttt cgtagaacgg taagtatggt gttgagcgct
    5401  aaggctttcg acaaactgtc gatcgacagt aagggtttag ttaggtgttc
    5451  cggtgttatt cctggagttt tgaggatagt attttcgtct ctgttttccg
    5501  atgccgacgc gtgggtgggt tatagcaaac acgaagtttc ctcacttccc
    5551  ataacacgtg tagcgcgaaa aagttatctt tcgcgttgga gcagactaag
    5601  gaagcgtgca tcgcctttat acgattcgtc taagaggatc ttagcgtctt
    5651  tgacttcgga gattcacgag tctttccaaa atttggaact aactaatggt
    5701  gctaagtcct tgtatggaca tgtgagttct gtactctcag cgtctaatag
    5751  tgtggttagc aaggcaggaa acgccgttgc agcagttaaa gcggcgggga
    5801  gtggtcttag taaacgtgtg aggcgtattc gtccttcttt tcgcctagct
    5851  cggtgtgtta atgaacagac cagcgaatac aattctgcta gtgacgaatc
    5901  tgagttggac gagtcgttgc ttagtgacac gcccggtctt cgtggtaacg
    5951  ggaagtgtaa agctttgttt cgtgtcattt ccggacgcgt ttcggtatgt
    6001  tgtaggcgcg ctgtagaagc cttgaagcgt ttagtcctac acgtcggtga
    6051  ctgcttgtac acgcgcatta tggactcttt tgtgaggtta tttgttgaaa
    6101  ccaatgttgc agtcgggaag tgtgaatctt tcgtcgtcga cagtacccga
    6151  aaaatttctg atttagtaaa cgggtatatc acatggcgca atcttcattc
    6201  cggtgcgtac acgacgactc cagggttatc tggtggtagt aggagttctc
    6251  tttccaggtt cttggatggt ggtctcacgg tgtgtaattc gaaatattgt
    6301  taccgcgtgg ttgacaggtt ttcgatgaga cctttattga gtctagtcca
    6351  tcggatgagg actgcctcga taaacgtgtt gttagaattc ttgaagaacc
    6401  tcccagtttg tttagtttcg atatacactt taatagagtg tagatctagg
    6451  attttccctt tgaaggaatt tctttggggc ttttgcgttt ttgtttggaa
    6501  cattgttaag gaactttcta tatgcattta cggaagtctc cccgtttgcg
    6551  ttacgaggtt gtgtaatagg gcgttccgtc gcggttccaa cgaaggtgac
    6601  gtcggtacgc ctcaagtgat caccgaagcc gaaaaccgaa tcgagttttt
    6651  gcgagaagtt ctcgccgaaa tggcacggta tcgtgcttct ctcgagatac
    6701  ccgtgccagg gtcgcctgat agtccttttg ttccaccaac atacggcgag
    6751  attgaggagt tatgtaacga ttcctctgac agtgcccgat tgataggtgt
    6801  ggacaatggt ttagattcag tgcccactga aggcgaagca gaactagatt
    6851  cggatggtga tagcgacgac tcaatacctt tggatcgcga ctttgagcaa
    6901  atcggaggtc ttggcggaag cggtaacgtt gacgtctttc gtttagggct
    6951  gaagttcgtg tggaggatgt tgcgtaattt gtttaactta agagccgtta
    7001  aattctccta tgggttagct cttcagtgta tatttaacgg cggttcaatg
    7051  ggccagttta cgtcgcgact gttattcagt ttcggcaact gcttaccgtt
    7101  tgagctcttt agacacgttt gtagtgtgag gtggctgtca aagagcttag
    7151  caatacgtgt tcgtaacgct agaatttgtg acgaagaaac ggtcgaacgt
    7201  ttcttcagtt tttcgcgaat tttgtacgat tcgcgttact tatcggacgt
    7251  gttttcggtg ttggagaggg tcgattttta cttaagttat ctattctcgt
    7301  tgccgaagag gtgtcttacg cgtaaccgta gtgtccgagt tacgcgtcga
    7351  gcgccagttc gcgtgattag ggacatgggg cttgtggaag acggcaagaa
    7401  gtctttaacc gaggtgttga actctttgga ctcattgaaa gtgtccgacc
    7451  gtaaagggaa gtcagcactt attgaaagtg atggttccga ctccgagagc
    7501  ggtcattcat tcggttccat ttcattcgga tcggttaaag aggaagtttt
    7551  agaagcagtg aacagtggtg tcgtatccga aaaagctcca ctgatgaagc
    7601  atgcggatgc actaagcagg ttggagccag accttagtgg taaaaaggat
    7651  cttcctattg tcaggagaag ttttacccgc ggtgaatcta caggtacgaa
    7701  accggcagga agcttgtgtg tgtacttaac cacgttgaat tcttcattcg
    7751  gttcggtgcc tgacctgtat cccgtcgcac gtgacataac gtacaagaag
    7801  atgaccaacg ccatgccgaa gttttattac tcgcaaaagg taacgttgta
    7851  cgaacttcat ggaaaattga gctcgtactg ggatgaattg aagacggtag
    7901  gttttaatag gaagttggcg aagatggatt tagacgatga cgttgatgtc
    7951  gtcgatttta acttgaaggt aatagtgggg aggcatggta cccgtccttt
    8001  cagaaatact gtgaactctc acgagttcat gttttgtgat gacgggttgg
    8051  tgctttgccc gggaccgaaa aaacgtgact ttgctctgat ctctagtcaa
    8101  acgcaattcg ttgctgcgaa ctcattcctg cgtgctgtgg acggtaaaga
    8151  tctgacgttc actaattcgg agcatagtct tatagtttat gaggctcgtc
    8201  ccggtggtgg aaagacgcat tctttggtga cgtatttcgc ccgatatggt
    8251  accaaagtgt cttgcttggt ggtgaccgct aacaaaaatt gtcaagcgga
    8301  gatttctcaa agaatctcta gagagttaat ggatagaaag atgcttgcta
    8351  aacacgttgt taaaaccgcc ggtagagtgt tcactgtgga ctcttatctg
    8401  atgaaccata ttcgactcaa gactgacttg ttgtttgtcg atgtgtgttt
    8451  tatggttcat gctggagcaa tcggagcggt tgttgagttc acttcacgta
    8501  aggctgtggt tttcttcggt gatagtagac aaattcatta tattcaccgg
    8551  aacgattttg gtgtttcatt gttgcatgac atagacgcat ttatagagcc
    8601  acagcaccgc atttacggtg aggtgtccta caggtgtcct tgggacatct
    8651  gtgagtggtt gtctaaattc tatccgagac atgtggccac tgctaacact
    8701  ggtagtatcg ggagatcgag tgtgtctata gagataatta atgggtgtga
    8751  cgatgttcct tacgatagta gcgcgaagta catcgtttac acacaagcag
    8801  aaaagaacga actgcaaaag caccttggtc gtttaaccgt agccggaact
    8851  aaagcggtgc ctattgtgaa cacagtgcat gaagttcaag gtgaaacata
    8901  taagaaggtt cgtttggtaa ggtgcaaata ccaagaggac actccttcct
    8951  gttcagataa ccatgttgtt gtggctttaa ccaggcacgt cgactcctta
    9001  acttactccg ttttgaatag caggagatac gacaagaccg cttccagtat
    9051  agatgaagcg agggagattt ttgacaaatt tcgttcgacg aaccattctc
    9101  acggttgttc gacgttggaa tggtaccttg agaaataccc tactgaatat
    9151  aagggtagta aagcatcttc ggcgccgtta agttgtatta acgagttgct
    9201  taacgaggtc gttgtcggtt cttcggttgt gcagttggga gatacttcag
    9251  aagaattaag ttcccgtcct tttgagtctg gatgtgacaa cattaccgta
    9301  agggacactg caccccctga ttcaggtaat ctacacgaac cggctcgcgt
    9351  tcggcgtggt aaggtcgcaa cgaattccgc caagaaaagc gtccctacaa
    9401  gaaaatcttc tgtcgtacga aagtcgtaat tacaacttta taaagacgga
    9451  gcgatttgtg gggcccgaaa atttcggtaa agtcatggct gcggctgtta
    9501  ttgagaggtg ttttaggatg gacgaagtgg ccaagataag aagtgatgtt
    9551  attgctttga ctgaagccaa tattcaaaag tggctcgata aacgtactcc
    9601  gtgtcaggta aaatctgtgc aggccgaatt gaagttacca tttgctgtgg
    9651  aagagcaaat caccaactac aaactaatgg ttaagcgtga tgccaaagta
    9701  aagctagatg attcgagtct gtccaagcac cctgccgcac tgaatattat
    9751  gtttcataag aagtttatta atgctattta ttctccatgc ttcgacgaat
    9801  ttaagaatag ggtgttgtcg tcactaaacg gtaatatagt gttcttcacc
    9851  gaaatgacga acgctggatt ggcggaagtc attagaagga ttataggtga
    9901  tgacgataat ctttttgttg gggaagtgga tttcagtaag ttcgataagt
    9951  ctcaagattt gtttgttaag gagtacgagc gtgcgttata tgctgagttc
   10001  ggatttgatg cacaacttct cgacgtgtgg atggaaggcg agtaccgcgc
   10051  tagggctacc acgttagacg gtcaactgag tttttcggtc gacggtcaac
   10101  cgcgttcggg aggttcgaac acatggattg ggaactcttt ggttacactg
   10151  ggtatcctat ccttgtatta cgacgactca aagttcgagc tactgcttat
   10201  atctggtgac gattctctga tctattcaaa agaaaagatt agtaactttt
   10251  cttcagaaat ttgtctggag acaggtttcg aaactaagtt tatgtctcct
   10301  agcgtaccat acttttgttc gaagtttgtg gttcagacag ggaacaaaac
   10351  gtgttttgta ccggaccctt acaagttgtt ggttaaactg ggggctcccc
   10401  aatacaaatt gactgatgac gaactcttcg aattgttcac ttcctttaaa
   10451  gacatcactc aggactttgg tgatcaggtg gtcctagaga aattgaagtt
   10501  gttagtagag actaagtacg gctttactag cggaactact atgcccgctc
   10551  tatgtgctat acattgtgta cggtctaatt atttgtcttt tgaaaggttg
   10601  tttcccttta ttagaggttg gtatgttgtt gatgctttga agtttagaca
   10651  actgaggaaa ttcgccaatt tgatctgtga acgtgtggtt tacgatcacc
   10701  gcgtgggtta tttttcgtac tttgacaatc cgtttgctaa acccgacgct
   10751  agcgatggtc aagccgatga cttagcgaca ggctgatagg ttaatacgct
   10801  tctcagaacg tgtggttgta ttaactaact ttaattcgaa caaattattg
   10851  ttaagagtct gcgagttacg atggacgata ctagcggaca aactttcatt
   10901  tctgtgaact tttctgacga aagcaacaca gctagcactg aagtcaaaac
   10951  cgtaagtttg gaagcggatc gcttggaatt tttacggaaa atgaatccct
   11001  ttattatcga cgctttgata cggaaaacta gttatctggg tgctcgcttt
   11051  cgcgcgagaa taataggagt gtgcgtggat tgtggtagaa aacacgataa
   11101  ggcatcgagg actgaacgta agtgtaaagt caacaacaca caatctcaga
   11151  acgaggtggc gcatatgtta atgcacgatc ccgtgaaata tttaaataaa
   11201  agaaaagcta gagctttttc taacgcagag atgtttgcga tcgatttgtt
   11251  tatgcatacc aaagaaaggc aattagcggt tgatttggcc gctgaaaggg
   11301  agaagacgag attggctcgt agacacccga tgcgttctcc ggagaaaact
   11351  ccggaacatt ataagttcgg tatgactgct aaggcaatgt taccgaacat
   11401  caacgctata gacgttggtg ataacgaaga cacttcgtcg gaatacccag
   11451  tgagtctgag tgtttcaggc ggagttctcc gtgaacacca cttcatctga
   11501  ttgaagtgga cggaataagt tccttgcgga actttatgtc gggttggtaa
   11551  aaacccttat gatggtgatg tatcactaga caataaccgg atgggtaaag
   11601  tctttaaaat gatcgagggg aaaattaacc atatcctctc gttggtctaa
   11651  gctcccacag agtgtagtgg tctcaagtga ggcttaacgt atgcgtgaac
   11701  caaagaagtt ctccttagag tgtgtgttgt ttacccaaca cactgtccct
   11751  atggggggcc aacataggtc ca