Sequence of DPV Citrus tristeza virus
Citrus tristeza virus strain VT defective RNA CTV-L5', complete sequence.
ACC No: AY206452
Dated: 2003-01-31 | Length: 11772 | CRC: -1464161562
!!NA_SEQUENCE 1.0
ID AY206452 standard; RNA; VRL; 11772 BP.
XX
AC AY206452;
XX
SV AY206452.1
XX
DT 31-JAN-2003 (Rel. 74, Created)
DT 31-JAN-2003 (Rel. 74, Last updated, Version 1)
XX
DE Citrus tristeza virus strain VT defective RNA CTV-L5', complete sequence.
XX
KW .
XX
OS Citrus tristeza virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC Closterovirus.
XX
RN [1]
RP 1-11772
RX MEDLINE; 22089184.
RX PUBMED; 12093181.
RA Che X., Mawassi M., Bar-Joseph M.;
RT "A novel class of large and infectious defective RNAs of Citrus tristeza
RT virus";
RL Virology 298(1):133-145(2002).
XX
RN [2]
RP 1-11772
RA Bar-Joseph M., Che X., Mawassi M.;
RT ;
RL Submitted (22-DEC-2002) to the EMBL/GenBank/DDBJ databases.
RL Virology, Plant Protection Institute, Agriculture Research Organization,
RL Volcani Center, Bet Dagan 50-250, Israel
XX
FH Key Location/Qualifiers
FH
FT source 1. .11772
FT /db_xref="taxon:12162"
FT /organism="Citrus tristeza virus"
FT /strain="VT"
FT misc_feature 1. .11772
FT /note="defective RNA CTV-L5'; contains intact ORF11"
FT misc_feature 105. .10784
FT /note="similar to replicase genes ORF1a and 1b"
XX
SQ Sequence 11772 BP; 2766 A; 2395 C; 3112 G; 3499 T; 0 other;
AY206452 Length: 11772 February 11, 2003 08:55 Type: N Check: 9175 ..
1 aatttctcaa attcacccgt accctccgga aatcacgtcc ggacgctgcg
51 ggaatcggtg taaatcccgg caaattgccc actacgccca tacaaacaaa
101 tatacatgtc gaaactcgga gctcgcttca agtcctcgac tttcgctgta
151 cgcaggcatt acatcatctc gcgcatctgg cgctttaaca ccgttggagt
201 cctgcacttc ttcggtactg aaacaaccac caaggtggtt aaggaatttt
251 cggctcctca gccgatagtc cctctacgga aatcctgttt tccgttttct
301 gttcgcgctg ctgttcgcgc gattaaagct gccggacgtc ccattgaccg
351 tccgcgctct ggatgcctct gtggcctccc tgttatcgac acatctggtg
401 tcgtacgtgc ctctgtcgcg ggcatttgga ggtattctct gtgtaaacct
451 ccccttactg ccgccgccaa gaagtccatt gccaaggcga agaaagattc
501 tgctttcttt cttagccggg cttcttcact cttctcacgg gaagtcccct
551 gcggcacgcg tcatagactt cgtaggcgcg ttatgaaacg agtagaccct
601 accatgcacg agagtcccca agacgagatc aaacttaagg gacgccgaca
651 tggcaagaat tcttacctcc cgtatatggg ggaagcggcg ttggatgata
701 tccttcgctg gattgagggg gtaaatcccc cgccgtcgat ggtcgccatt
751 ccggtgccca tctctttcgg cgccgtgccc acaacggcat ggtgctctcc
801 tgttgacgcg gctgttttgc ggtgtcgttt agactaccac gccgctgaga
851 cttcctttcg tgacgaaagg aagcacgtga gatacgtcta taatgacgtg
901 tcttctgctg ccaaccgtcc tcgtacggtt tctgccaagt gcgggcgtgt
951 tttcagcggt tctgcgctgg gtgttgaggt cccgagcact agggatcgcc
1001 ataccgcttt cgtgagatct actcacgcta gcgttttctt ctcccggagt
1051 tcgccggttc gcatgttccg tcctgggcgg aataatttct tcactagcgt
1101 cgttagtggg cggcgcgtta gttactttag acccggacct aatggtacgg
1151 tgtctgtttt aatgtcggac ggtgtcaaca cggcgcgtct cgacgttgtg
1201 cctcctggct accatgcgta cgctaaagcg ttaggcgcca aagtgccgtg
1251 tttgtgggag tcgtccgatt tggacgatgc taagatacgt gacggccagt
1301 gctacgttcg tcacgtatac gacgtggccc tttacttcgg aaggcgcgtc
1351 gatctttctg tgcgccgaac tttgggtttg tttcccacag tgggtgcact
1401 aaaagcttat cttcttcgcg agtacggtcg caactctttg aaggttccga
1451 tgcgcgggac ttacactttt ggcagtgtgt ttcatagcct gtcgactaaa
1501 tcttttgtcg acttgagatc tattcctaac catcacttgg ttggtggtgc
1551 gtctgctcac gtgtttattg ggcagattcg tgttgacgtt cctggtggtg
1601 tctctaagcc atcacgagca gctgcgcagg cgaataggcg tttgcgtgaa
1651 gacgggtttt taggtagtac cgattcgtct tcttcaggag ggtcgagata
1701 ctgttcggat tgttcaactc ctcgcagtcc accctctccg tcgattgttg
1751 gaccaactct tggccggata ccaagtataa accggaagtt ccggtttcca
1801 gcaggcactc agttgagtgt ttctatccct aaacgcaacg atgatcgcgt
1851 gtatgtatcg gtcggccaag actttgatga gttgtgccat gccgtgtgta
1901 cctacgttaa gaggtacaac tcgagaaaag cattttacac gcggtttgaa
1951 aatggtgatg atttcgccgt cattgctgcg gcttccgtcg gaggtcttca
2001 cgtgttcgtg aaacgcggta actttacggc tcggttccct atgtcggctt
2051 caaggtatga gcatcattat gatcgaagta tgaaaggcgc cggtttgtcg
2101 tgggtgcgga agagtcggtt tccgaatgtt gaagttatac gccgtcgaag
2151 gagtcggacg ggcggttctt tggctagctt tccggacgcg aatttacgga
2201 ttaattctga ccaaccgtcg gattctgttc aggcagttcc ggtgtcaggt
2251 gagaattctc catcgtctcg aggagcgtct tcgccccgac gtgatcctgt
2301 tgaagggtcg ggctggtata aggtgggttc tcctagtcac cactcgagtg
2351 ccgctcgtgg gcaacgttcc actgaacgtg ggaagattgg ggatttcagt
2401 tttccgagta gcaccgtgta taatgcacat gtagacgagc gtgcttataa
2451 gcgtgtgttg aaattgcggg acacgtcggc gtcctttttt cttcgtatag
2501 ttttggctcg tttgtcgagt tatcggcctc ttagtgacga gttctttaac
2551 aagtgcgtta cttctcggtt cgtagcttgt atcgaggcgg ttgaatcggg
2601 tctcgttaca gtacactttc gatccgacgt gtttcgcgcc tcgttcccgt
2651 ttggagttta tttgtatact cgtcacgcgt ttgatattta cagtggtaag
2701 ctcctgcaac tagatagcta cgggttctcg gaagacctga aggacggtta
2751 ctgctatatt cgtcatatcg ctgaggtctg tttgagtatg ggaaaagttt
2801 tctttaggag ggacgttaac ttaggggcgt tcccttatgt tttcgaggta
2851 cagcaccgtc ttgagcggtt gtacggtaag cgggctgttg aatacggcgt
2901 tagaggttat ttttcagcaa cgcgtcttta ccactgttgc tttaccgatt
2951 cgccgagacc cttcaaatct ttaaataagt atcataagat gggtggtgaa
3001 gaaggtgcgt tattaatcac tgacactgat agattacgtg ccgtggggag
3051 tgcttacgaa aaggtgaagg ggcgtttgcc tgattcttta cttgttcgat
3101 cggtggagaa agatttgata gaattcaatc aaactctggt tgatacgcaa
3151 cgggctagac ctggtgttgc agtacctttt cagatgagtg agaaccaaca
3201 ggtgatgctc actagagctt atcctgagtt taatataaac tttactcatt
3251 ccgtacactc cgatcacccc gtggctgcgg gttctagaat gttagagaat
3301 caccttgttc gtaaatacgc aggtagcgat tattcggacg taggtggttg
3351 cccattattt catttacgtg cgggtcatac aggagttcac gtttgcagac
3401 cagtgtacga tattaaagac gcccaccgta gagtcgttcg tcatcatcaa
3451 cttagtaaag tagcttttga tcacactgac gggtctaagc aggttggtgc
3501 tgtcaatacg aacaccgtgt gtggtaacgt tttaggggag tgttttcatg
3551 cgtctgatgc gattgttatg gtgcaagttt atgacgtgcc attgcgagag
3601 ttgtgtagag ctatggtgaa caagaaagct tcggtgtgct atatgaccgt
3651 ggttacgcct ggtgagctgt tggacgcctg tgagtccttc ttcatcaaag
3701 agttagactg ttcggtggag ttggaccggt cgccgaatag ggttatctac
3751 tgttttaaca attcacggta tacgcatacc tattctacga tatgcgaata
3801 catgcgtact ccttgtgtgg tggtggatgg ttttctgttc actatagaga
3851 tggtttcact cagatgcaga gttaactatt attgtatcac caagtcgcgg
3901 gtttgtccga gaatcagcga gattaaacgg ttacgctatc gtcggtgtga
3951 tagtgacttg atcaggatca agattccgcg gtactctaat aagactcgta
4001 gttgtttacc agggtgttat tatttgtatt tagacgctaa gttcgtgagt
4051 cgtgtgtacg aatacgtggt taataattgt gttgtggtga atgctaagac
4101 ttttgaatgg acttggaact acattaagtc ctgtaagtcg agggtggtca
4151 tcagtgggaa gattatccat agggacgttc ctattgggtt ggagtatttg
4201 gatgggtttt ccgcagttat gttgtccgcg ggcgtgaaag gtaggcagaa
4251 cgcagaaacg ttttctaggc gtctacgggc cttttcaggc gacccttctc
4301 ttttcgaatt ggtgaggttc gccatttcag agaagtgtcg cgatttattt
4351 gtgggcgttc aggaggccgt agagagatac gtgaaatcgt acctcagaaa
4401 ctcgtttaat ataagtttcg cggacttgtc agatccgttg cttaccatta
4451 gtgagtattc ggagttagac gttcctatcg atttgccggg ttttggctgc
4501 ataacggaag gagatgaggc taaactcata gaagatgggg ttaagtcggc
4551 tttactgcga aaagcgttcg tgacgaggcc gcaactcatt ctcgaaaggg
4601 gcggtacgtc agagatcgtt ccttgtgggg atgatgatgg tttaggcagc
4651 gacggttctg acagtttact cgggtccggt agtgattcgt cttctaaggc
4701 cagtcctggt ggtttgcggg ccgggcgccc ttcactgttc agaagcttgt
4751 tgaagaagtt gggtgggggt ttttgtatgg ccaagaggtt attggacttg
4801 ttgtgcgagc gattagttgg ttcgttgtcg cgctttaagt tcggtaccac
4851 tcatttaacc tcattcttta gcatgttaca cgctaagctt tcgcgtaatt
4901 tcttcgacga ctcgattttt accgctgttt gggacgtggt gatgaatttg
4951 attagaatcg tcaacggggt gaccaggacg aaattggagt gttttcgcaa
5001 tgttcttcgg ttaattccta cgttgtgttc tggttgtaag gacttcgcaa
5051 aagactttgc aaacatgtgt aggttagttt tgccattttc tacggagttc
5101 ttcagtaaaa gctatactcc cctgtgtcgg tttagtttgg atgtattcga
5151 tgtcggactg attgagattt cagcgcgtaa catgggacta gagacttgtg
5201 tttcgatggc ttcagccatt tttaacgtcg tacttaccta tcctctggga
5251 agtattagct ttcccgtcgt atgcgcgaga gtttttggcg ccctcgctat
5301 ggaagtggga tcaaactatt gttttaagaa aagtttcggc aaacctgaaa
5351 ttttaggaga ggacgctttt cgtagaacgg taagtatggt gttgagcgct
5401 aaggctttcg acaaactgtc gatcgacagt aagggtttag ttaggtgttc
5451 cggtgttatt cctggagttt tgaggatagt attttcgtct ctgttttccg
5501 atgccgacgc gtgggtgggt tatagcaaac acgaagtttc ctcacttccc
5551 ataacacgtg tagcgcgaaa aagttatctt tcgcgttgga gcagactaag
5601 gaagcgtgca tcgcctttat acgattcgtc taagaggatc ttagcgtctt
5651 tgacttcgga gattcacgag tctttccaaa atttggaact aactaatggt
5701 gctaagtcct tgtatggaca tgtgagttct gtactctcag cgtctaatag
5751 tgtggttagc aaggcaggaa acgccgttgc agcagttaaa gcggcgggga
5801 gtggtcttag taaacgtgtg aggcgtattc gtccttcttt tcgcctagct
5851 cggtgtgtta atgaacagac cagcgaatac aattctgcta gtgacgaatc
5901 tgagttggac gagtcgttgc ttagtgacac gcccggtctt cgtggtaacg
5951 ggaagtgtaa agctttgttt cgtgtcattt ccggacgcgt ttcggtatgt
6001 tgtaggcgcg ctgtagaagc cttgaagcgt ttagtcctac acgtcggtga
6051 ctgcttgtac acgcgcatta tggactcttt tgtgaggtta tttgttgaaa
6101 ccaatgttgc agtcgggaag tgtgaatctt tcgtcgtcga cagtacccga
6151 aaaatttctg atttagtaaa cgggtatatc acatggcgca atcttcattc
6201 cggtgcgtac acgacgactc cagggttatc tggtggtagt aggagttctc
6251 tttccaggtt cttggatggt ggtctcacgg tgtgtaattc gaaatattgt
6301 taccgcgtgg ttgacaggtt ttcgatgaga cctttattga gtctagtcca
6351 tcggatgagg actgcctcga taaacgtgtt gttagaattc ttgaagaacc
6401 tcccagtttg tttagtttcg atatacactt taatagagtg tagatctagg
6451 attttccctt tgaaggaatt tctttggggc ttttgcgttt ttgtttggaa
6501 cattgttaag gaactttcta tatgcattta cggaagtctc cccgtttgcg
6551 ttacgaggtt gtgtaatagg gcgttccgtc gcggttccaa cgaaggtgac
6601 gtcggtacgc ctcaagtgat caccgaagcc gaaaaccgaa tcgagttttt
6651 gcgagaagtt ctcgccgaaa tggcacggta tcgtgcttct ctcgagatac
6701 ccgtgccagg gtcgcctgat agtccttttg ttccaccaac atacggcgag
6751 attgaggagt tatgtaacga ttcctctgac agtgcccgat tgataggtgt
6801 ggacaatggt ttagattcag tgcccactga aggcgaagca gaactagatt
6851 cggatggtga tagcgacgac tcaatacctt tggatcgcga ctttgagcaa
6901 atcggaggtc ttggcggaag cggtaacgtt gacgtctttc gtttagggct
6951 gaagttcgtg tggaggatgt tgcgtaattt gtttaactta agagccgtta
7001 aattctccta tgggttagct cttcagtgta tatttaacgg cggttcaatg
7051 ggccagttta cgtcgcgact gttattcagt ttcggcaact gcttaccgtt
7101 tgagctcttt agacacgttt gtagtgtgag gtggctgtca aagagcttag
7151 caatacgtgt tcgtaacgct agaatttgtg acgaagaaac ggtcgaacgt
7201 ttcttcagtt tttcgcgaat tttgtacgat tcgcgttact tatcggacgt
7251 gttttcggtg ttggagaggg tcgattttta cttaagttat ctattctcgt
7301 tgccgaagag gtgtcttacg cgtaaccgta gtgtccgagt tacgcgtcga
7351 gcgccagttc gcgtgattag ggacatgggg cttgtggaag acggcaagaa
7401 gtctttaacc gaggtgttga actctttgga ctcattgaaa gtgtccgacc
7451 gtaaagggaa gtcagcactt attgaaagtg atggttccga ctccgagagc
7501 ggtcattcat tcggttccat ttcattcgga tcggttaaag aggaagtttt
7551 agaagcagtg aacagtggtg tcgtatccga aaaagctcca ctgatgaagc
7601 atgcggatgc actaagcagg ttggagccag accttagtgg taaaaaggat
7651 cttcctattg tcaggagaag ttttacccgc ggtgaatcta caggtacgaa
7701 accggcagga agcttgtgtg tgtacttaac cacgttgaat tcttcattcg
7751 gttcggtgcc tgacctgtat cccgtcgcac gtgacataac gtacaagaag
7801 atgaccaacg ccatgccgaa gttttattac tcgcaaaagg taacgttgta
7851 cgaacttcat ggaaaattga gctcgtactg ggatgaattg aagacggtag
7901 gttttaatag gaagttggcg aagatggatt tagacgatga cgttgatgtc
7951 gtcgatttta acttgaaggt aatagtgggg aggcatggta cccgtccttt
8001 cagaaatact gtgaactctc acgagttcat gttttgtgat gacgggttgg
8051 tgctttgccc gggaccgaaa aaacgtgact ttgctctgat ctctagtcaa
8101 acgcaattcg ttgctgcgaa ctcattcctg cgtgctgtgg acggtaaaga
8151 tctgacgttc actaattcgg agcatagtct tatagtttat gaggctcgtc
8201 ccggtggtgg aaagacgcat tctttggtga cgtatttcgc ccgatatggt
8251 accaaagtgt cttgcttggt ggtgaccgct aacaaaaatt gtcaagcgga
8301 gatttctcaa agaatctcta gagagttaat ggatagaaag atgcttgcta
8351 aacacgttgt taaaaccgcc ggtagagtgt tcactgtgga ctcttatctg
8401 atgaaccata ttcgactcaa gactgacttg ttgtttgtcg atgtgtgttt
8451 tatggttcat gctggagcaa tcggagcggt tgttgagttc acttcacgta
8501 aggctgtggt tttcttcggt gatagtagac aaattcatta tattcaccgg
8551 aacgattttg gtgtttcatt gttgcatgac atagacgcat ttatagagcc
8601 acagcaccgc atttacggtg aggtgtccta caggtgtcct tgggacatct
8651 gtgagtggtt gtctaaattc tatccgagac atgtggccac tgctaacact
8701 ggtagtatcg ggagatcgag tgtgtctata gagataatta atgggtgtga
8751 cgatgttcct tacgatagta gcgcgaagta catcgtttac acacaagcag
8801 aaaagaacga actgcaaaag caccttggtc gtttaaccgt agccggaact
8851 aaagcggtgc ctattgtgaa cacagtgcat gaagttcaag gtgaaacata
8901 taagaaggtt cgtttggtaa ggtgcaaata ccaagaggac actccttcct
8951 gttcagataa ccatgttgtt gtggctttaa ccaggcacgt cgactcctta
9001 acttactccg ttttgaatag caggagatac gacaagaccg cttccagtat
9051 agatgaagcg agggagattt ttgacaaatt tcgttcgacg aaccattctc
9101 acggttgttc gacgttggaa tggtaccttg agaaataccc tactgaatat
9151 aagggtagta aagcatcttc ggcgccgtta agttgtatta acgagttgct
9201 taacgaggtc gttgtcggtt cttcggttgt gcagttggga gatacttcag
9251 aagaattaag ttcccgtcct tttgagtctg gatgtgacaa cattaccgta
9301 agggacactg caccccctga ttcaggtaat ctacacgaac cggctcgcgt
9351 tcggcgtggt aaggtcgcaa cgaattccgc caagaaaagc gtccctacaa
9401 gaaaatcttc tgtcgtacga aagtcgtaat tacaacttta taaagacgga
9451 gcgatttgtg gggcccgaaa atttcggtaa agtcatggct gcggctgtta
9501 ttgagaggtg ttttaggatg gacgaagtgg ccaagataag aagtgatgtt
9551 attgctttga ctgaagccaa tattcaaaag tggctcgata aacgtactcc
9601 gtgtcaggta aaatctgtgc aggccgaatt gaagttacca tttgctgtgg
9651 aagagcaaat caccaactac aaactaatgg ttaagcgtga tgccaaagta
9701 aagctagatg attcgagtct gtccaagcac cctgccgcac tgaatattat
9751 gtttcataag aagtttatta atgctattta ttctccatgc ttcgacgaat
9801 ttaagaatag ggtgttgtcg tcactaaacg gtaatatagt gttcttcacc
9851 gaaatgacga acgctggatt ggcggaagtc attagaagga ttataggtga
9901 tgacgataat ctttttgttg gggaagtgga tttcagtaag ttcgataagt
9951 ctcaagattt gtttgttaag gagtacgagc gtgcgttata tgctgagttc
10001 ggatttgatg cacaacttct cgacgtgtgg atggaaggcg agtaccgcgc
10051 tagggctacc acgttagacg gtcaactgag tttttcggtc gacggtcaac
10101 cgcgttcggg aggttcgaac acatggattg ggaactcttt ggttacactg
10151 ggtatcctat ccttgtatta cgacgactca aagttcgagc tactgcttat
10201 atctggtgac gattctctga tctattcaaa agaaaagatt agtaactttt
10251 cttcagaaat ttgtctggag acaggtttcg aaactaagtt tatgtctcct
10301 agcgtaccat acttttgttc gaagtttgtg gttcagacag ggaacaaaac
10351 gtgttttgta ccggaccctt acaagttgtt ggttaaactg ggggctcccc
10401 aatacaaatt gactgatgac gaactcttcg aattgttcac ttcctttaaa
10451 gacatcactc aggactttgg tgatcaggtg gtcctagaga aattgaagtt
10501 gttagtagag actaagtacg gctttactag cggaactact atgcccgctc
10551 tatgtgctat acattgtgta cggtctaatt atttgtcttt tgaaaggttg
10601 tttcccttta ttagaggttg gtatgttgtt gatgctttga agtttagaca
10651 actgaggaaa ttcgccaatt tgatctgtga acgtgtggtt tacgatcacc
10701 gcgtgggtta tttttcgtac tttgacaatc cgtttgctaa acccgacgct
10751 agcgatggtc aagccgatga cttagcgaca ggctgatagg ttaatacgct
10801 tctcagaacg tgtggttgta ttaactaact ttaattcgaa caaattattg
10851 ttaagagtct gcgagttacg atggacgata ctagcggaca aactttcatt
10901 tctgtgaact tttctgacga aagcaacaca gctagcactg aagtcaaaac
10951 cgtaagtttg gaagcggatc gcttggaatt tttacggaaa atgaatccct
11001 ttattatcga cgctttgata cggaaaacta gttatctggg tgctcgcttt
11051 cgcgcgagaa taataggagt gtgcgtggat tgtggtagaa aacacgataa
11101 ggcatcgagg actgaacgta agtgtaaagt caacaacaca caatctcaga
11151 acgaggtggc gcatatgtta atgcacgatc ccgtgaaata tttaaataaa
11201 agaaaagcta gagctttttc taacgcagag atgtttgcga tcgatttgtt
11251 tatgcatacc aaagaaaggc aattagcggt tgatttggcc gctgaaaggg
11301 agaagacgag attggctcgt agacacccga tgcgttctcc ggagaaaact
11351 ccggaacatt ataagttcgg tatgactgct aaggcaatgt taccgaacat
11401 caacgctata gacgttggtg ataacgaaga cacttcgtcg gaatacccag
11451 tgagtctgag tgtttcaggc ggagttctcc gtgaacacca cttcatctga
11501 ttgaagtgga cggaataagt tccttgcgga actttatgtc gggttggtaa
11551 aaacccttat gatggtgatg tatcactaga caataaccgg atgggtaaag
11601 tctttaaaat gatcgagggg aaaattaacc atatcctctc gttggtctaa
11651 gctcccacag agtgtagtgg tctcaagtga ggcttaacgt atgcgtgaac
11701 caaagaagtt ctccttagag tgtgtgttgt ttacccaaca cactgtccct
11751 atggggggcc aacataggtc ca