Sequence of DPV Citrus tristeza virus
Citrus tristeza virus strain VT defective RNA CTV-L5', complete sequence.
ACC No: AY206452
Dated: 2003-01-31 | Length: 11772 | CRC: -1464161562
!!NA_SEQUENCE 1.0 ID AY206452 standard; RNA; VRL; 11772 BP. XX AC AY206452; XX SV AY206452.1 XX DT 31-JAN-2003 (Rel. 74, Created) DT 31-JAN-2003 (Rel. 74, Last updated, Version 1) XX DE Citrus tristeza virus strain VT defective RNA CTV-L5', complete sequence. XX KW . XX OS Citrus tristeza virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae; OC Closterovirus. XX RN [1] RP 1-11772 RX MEDLINE; 22089184. RX PUBMED; 12093181. RA Che X., Mawassi M., Bar-Joseph M.; RT "A novel class of large and infectious defective RNAs of Citrus tristeza RT virus"; RL Virology 298(1):133-145(2002). XX RN [2] RP 1-11772 RA Bar-Joseph M., Che X., Mawassi M.; RT ; RL Submitted (22-DEC-2002) to the EMBL/GenBank/DDBJ databases. RL Virology, Plant Protection Institute, Agriculture Research Organization, RL Volcani Center, Bet Dagan 50-250, Israel XX FH Key Location/Qualifiers FH FT source 1. .11772 FT /db_xref="taxon:12162" FT /organism="Citrus tristeza virus" FT /strain="VT" FT misc_feature 1. .11772 FT /note="defective RNA CTV-L5'; contains intact ORF11" FT misc_feature 105. .10784 FT /note="similar to replicase genes ORF1a and 1b" XX SQ Sequence 11772 BP; 2766 A; 2395 C; 3112 G; 3499 T; 0 other; AY206452 Length: 11772 February 11, 2003 08:55 Type: N Check: 9175 .. 1 aatttctcaa attcacccgt accctccgga aatcacgtcc ggacgctgcg 51 ggaatcggtg taaatcccgg caaattgccc actacgccca tacaaacaaa 101 tatacatgtc gaaactcgga gctcgcttca agtcctcgac tttcgctgta 151 cgcaggcatt acatcatctc gcgcatctgg cgctttaaca ccgttggagt 201 cctgcacttc ttcggtactg aaacaaccac caaggtggtt aaggaatttt 251 cggctcctca gccgatagtc cctctacgga aatcctgttt tccgttttct 301 gttcgcgctg ctgttcgcgc gattaaagct gccggacgtc ccattgaccg 351 tccgcgctct ggatgcctct gtggcctccc tgttatcgac acatctggtg 401 tcgtacgtgc ctctgtcgcg ggcatttgga ggtattctct gtgtaaacct 451 ccccttactg ccgccgccaa gaagtccatt gccaaggcga agaaagattc 501 tgctttcttt cttagccggg cttcttcact cttctcacgg gaagtcccct 551 gcggcacgcg tcatagactt cgtaggcgcg ttatgaaacg agtagaccct 601 accatgcacg agagtcccca agacgagatc aaacttaagg gacgccgaca 651 tggcaagaat tcttacctcc cgtatatggg ggaagcggcg ttggatgata 701 tccttcgctg gattgagggg gtaaatcccc cgccgtcgat ggtcgccatt 751 ccggtgccca tctctttcgg cgccgtgccc acaacggcat ggtgctctcc 801 tgttgacgcg gctgttttgc ggtgtcgttt agactaccac gccgctgaga 851 cttcctttcg tgacgaaagg aagcacgtga gatacgtcta taatgacgtg 901 tcttctgctg ccaaccgtcc tcgtacggtt tctgccaagt gcgggcgtgt 951 tttcagcggt tctgcgctgg gtgttgaggt cccgagcact agggatcgcc 1001 ataccgcttt cgtgagatct actcacgcta gcgttttctt ctcccggagt 1051 tcgccggttc gcatgttccg tcctgggcgg aataatttct tcactagcgt 1101 cgttagtggg cggcgcgtta gttactttag acccggacct aatggtacgg 1151 tgtctgtttt aatgtcggac ggtgtcaaca cggcgcgtct cgacgttgtg 1201 cctcctggct accatgcgta cgctaaagcg ttaggcgcca aagtgccgtg 1251 tttgtgggag tcgtccgatt tggacgatgc taagatacgt gacggccagt 1301 gctacgttcg tcacgtatac gacgtggccc tttacttcgg aaggcgcgtc 1351 gatctttctg tgcgccgaac tttgggtttg tttcccacag tgggtgcact 1401 aaaagcttat cttcttcgcg agtacggtcg caactctttg aaggttccga 1451 tgcgcgggac ttacactttt ggcagtgtgt ttcatagcct gtcgactaaa 1501 tcttttgtcg acttgagatc tattcctaac catcacttgg ttggtggtgc 1551 gtctgctcac gtgtttattg ggcagattcg tgttgacgtt cctggtggtg 1601 tctctaagcc atcacgagca gctgcgcagg cgaataggcg tttgcgtgaa 1651 gacgggtttt taggtagtac cgattcgtct tcttcaggag ggtcgagata 1701 ctgttcggat tgttcaactc ctcgcagtcc accctctccg tcgattgttg 1751 gaccaactct tggccggata ccaagtataa accggaagtt ccggtttcca 1801 gcaggcactc agttgagtgt ttctatccct aaacgcaacg atgatcgcgt 1851 gtatgtatcg gtcggccaag actttgatga gttgtgccat gccgtgtgta 1901 cctacgttaa gaggtacaac tcgagaaaag cattttacac gcggtttgaa 1951 aatggtgatg atttcgccgt cattgctgcg gcttccgtcg gaggtcttca 2001 cgtgttcgtg aaacgcggta actttacggc tcggttccct atgtcggctt 2051 caaggtatga gcatcattat gatcgaagta tgaaaggcgc cggtttgtcg 2101 tgggtgcgga agagtcggtt tccgaatgtt gaagttatac gccgtcgaag 2151 gagtcggacg ggcggttctt tggctagctt tccggacgcg aatttacgga 2201 ttaattctga ccaaccgtcg gattctgttc aggcagttcc ggtgtcaggt 2251 gagaattctc catcgtctcg aggagcgtct tcgccccgac gtgatcctgt 2301 tgaagggtcg ggctggtata aggtgggttc tcctagtcac cactcgagtg 2351 ccgctcgtgg gcaacgttcc actgaacgtg ggaagattgg ggatttcagt 2401 tttccgagta gcaccgtgta taatgcacat gtagacgagc gtgcttataa 2451 gcgtgtgttg aaattgcggg acacgtcggc gtcctttttt cttcgtatag 2501 ttttggctcg tttgtcgagt tatcggcctc ttagtgacga gttctttaac 2551 aagtgcgtta cttctcggtt cgtagcttgt atcgaggcgg ttgaatcggg 2601 tctcgttaca gtacactttc gatccgacgt gtttcgcgcc tcgttcccgt 2651 ttggagttta tttgtatact cgtcacgcgt ttgatattta cagtggtaag 2701 ctcctgcaac tagatagcta cgggttctcg gaagacctga aggacggtta 2751 ctgctatatt cgtcatatcg ctgaggtctg tttgagtatg ggaaaagttt 2801 tctttaggag ggacgttaac ttaggggcgt tcccttatgt tttcgaggta 2851 cagcaccgtc ttgagcggtt gtacggtaag cgggctgttg aatacggcgt 2901 tagaggttat ttttcagcaa cgcgtcttta ccactgttgc tttaccgatt 2951 cgccgagacc cttcaaatct ttaaataagt atcataagat gggtggtgaa 3001 gaaggtgcgt tattaatcac tgacactgat agattacgtg ccgtggggag 3051 tgcttacgaa aaggtgaagg ggcgtttgcc tgattcttta cttgttcgat 3101 cggtggagaa agatttgata gaattcaatc aaactctggt tgatacgcaa 3151 cgggctagac ctggtgttgc agtacctttt cagatgagtg agaaccaaca 3201 ggtgatgctc actagagctt atcctgagtt taatataaac tttactcatt 3251 ccgtacactc cgatcacccc gtggctgcgg gttctagaat gttagagaat 3301 caccttgttc gtaaatacgc aggtagcgat tattcggacg taggtggttg 3351 cccattattt catttacgtg cgggtcatac aggagttcac gtttgcagac 3401 cagtgtacga tattaaagac gcccaccgta gagtcgttcg tcatcatcaa 3451 cttagtaaag tagcttttga tcacactgac gggtctaagc aggttggtgc 3501 tgtcaatacg aacaccgtgt gtggtaacgt tttaggggag tgttttcatg 3551 cgtctgatgc gattgttatg gtgcaagttt atgacgtgcc attgcgagag 3601 ttgtgtagag ctatggtgaa caagaaagct tcggtgtgct atatgaccgt 3651 ggttacgcct ggtgagctgt tggacgcctg tgagtccttc ttcatcaaag 3701 agttagactg ttcggtggag ttggaccggt cgccgaatag ggttatctac 3751 tgttttaaca attcacggta tacgcatacc tattctacga tatgcgaata 3801 catgcgtact ccttgtgtgg tggtggatgg ttttctgttc actatagaga 3851 tggtttcact cagatgcaga gttaactatt attgtatcac caagtcgcgg 3901 gtttgtccga gaatcagcga gattaaacgg ttacgctatc gtcggtgtga 3951 tagtgacttg atcaggatca agattccgcg gtactctaat aagactcgta 4001 gttgtttacc agggtgttat tatttgtatt tagacgctaa gttcgtgagt 4051 cgtgtgtacg aatacgtggt taataattgt gttgtggtga atgctaagac 4101 ttttgaatgg acttggaact acattaagtc ctgtaagtcg agggtggtca 4151 tcagtgggaa gattatccat agggacgttc ctattgggtt ggagtatttg 4201 gatgggtttt ccgcagttat gttgtccgcg ggcgtgaaag gtaggcagaa 4251 cgcagaaacg ttttctaggc gtctacgggc cttttcaggc gacccttctc 4301 ttttcgaatt ggtgaggttc gccatttcag agaagtgtcg cgatttattt 4351 gtgggcgttc aggaggccgt agagagatac gtgaaatcgt acctcagaaa 4401 ctcgtttaat ataagtttcg cggacttgtc agatccgttg cttaccatta 4451 gtgagtattc ggagttagac gttcctatcg atttgccggg ttttggctgc 4501 ataacggaag gagatgaggc taaactcata gaagatgggg ttaagtcggc 4551 tttactgcga aaagcgttcg tgacgaggcc gcaactcatt ctcgaaaggg 4601 gcggtacgtc agagatcgtt ccttgtgggg atgatgatgg tttaggcagc 4651 gacggttctg acagtttact cgggtccggt agtgattcgt cttctaaggc 4701 cagtcctggt ggtttgcggg ccgggcgccc ttcactgttc agaagcttgt 4751 tgaagaagtt gggtgggggt ttttgtatgg ccaagaggtt attggacttg 4801 ttgtgcgagc gattagttgg ttcgttgtcg cgctttaagt tcggtaccac 4851 tcatttaacc tcattcttta gcatgttaca cgctaagctt tcgcgtaatt 4901 tcttcgacga ctcgattttt accgctgttt gggacgtggt gatgaatttg 4951 attagaatcg tcaacggggt gaccaggacg aaattggagt gttttcgcaa 5001 tgttcttcgg ttaattccta cgttgtgttc tggttgtaag gacttcgcaa 5051 aagactttgc aaacatgtgt aggttagttt tgccattttc tacggagttc 5101 ttcagtaaaa gctatactcc cctgtgtcgg tttagtttgg atgtattcga 5151 tgtcggactg attgagattt cagcgcgtaa catgggacta gagacttgtg 5201 tttcgatggc ttcagccatt tttaacgtcg tacttaccta tcctctggga 5251 agtattagct ttcccgtcgt atgcgcgaga gtttttggcg ccctcgctat 5301 ggaagtggga tcaaactatt gttttaagaa aagtttcggc aaacctgaaa 5351 ttttaggaga ggacgctttt cgtagaacgg taagtatggt gttgagcgct 5401 aaggctttcg acaaactgtc gatcgacagt aagggtttag ttaggtgttc 5451 cggtgttatt cctggagttt tgaggatagt attttcgtct ctgttttccg 5501 atgccgacgc gtgggtgggt tatagcaaac acgaagtttc ctcacttccc 5551 ataacacgtg tagcgcgaaa aagttatctt tcgcgttgga gcagactaag 5601 gaagcgtgca tcgcctttat acgattcgtc taagaggatc ttagcgtctt 5651 tgacttcgga gattcacgag tctttccaaa atttggaact aactaatggt 5701 gctaagtcct tgtatggaca tgtgagttct gtactctcag cgtctaatag 5751 tgtggttagc aaggcaggaa acgccgttgc agcagttaaa gcggcgggga 5801 gtggtcttag taaacgtgtg aggcgtattc gtccttcttt tcgcctagct 5851 cggtgtgtta atgaacagac cagcgaatac aattctgcta gtgacgaatc 5901 tgagttggac gagtcgttgc ttagtgacac gcccggtctt cgtggtaacg 5951 ggaagtgtaa agctttgttt cgtgtcattt ccggacgcgt ttcggtatgt 6001 tgtaggcgcg ctgtagaagc cttgaagcgt ttagtcctac acgtcggtga 6051 ctgcttgtac acgcgcatta tggactcttt tgtgaggtta tttgttgaaa 6101 ccaatgttgc agtcgggaag tgtgaatctt tcgtcgtcga cagtacccga 6151 aaaatttctg atttagtaaa cgggtatatc acatggcgca atcttcattc 6201 cggtgcgtac acgacgactc cagggttatc tggtggtagt aggagttctc 6251 tttccaggtt cttggatggt ggtctcacgg tgtgtaattc gaaatattgt 6301 taccgcgtgg ttgacaggtt ttcgatgaga cctttattga gtctagtcca 6351 tcggatgagg actgcctcga taaacgtgtt gttagaattc ttgaagaacc 6401 tcccagtttg tttagtttcg atatacactt taatagagtg tagatctagg 6451 attttccctt tgaaggaatt tctttggggc ttttgcgttt ttgtttggaa 6501 cattgttaag gaactttcta tatgcattta cggaagtctc cccgtttgcg 6551 ttacgaggtt gtgtaatagg gcgttccgtc gcggttccaa cgaaggtgac 6601 gtcggtacgc ctcaagtgat caccgaagcc gaaaaccgaa tcgagttttt 6651 gcgagaagtt ctcgccgaaa tggcacggta tcgtgcttct ctcgagatac 6701 ccgtgccagg gtcgcctgat agtccttttg ttccaccaac atacggcgag 6751 attgaggagt tatgtaacga ttcctctgac agtgcccgat tgataggtgt 6801 ggacaatggt ttagattcag tgcccactga aggcgaagca gaactagatt 6851 cggatggtga tagcgacgac tcaatacctt tggatcgcga ctttgagcaa 6901 atcggaggtc ttggcggaag cggtaacgtt gacgtctttc gtttagggct 6951 gaagttcgtg tggaggatgt tgcgtaattt gtttaactta agagccgtta 7001 aattctccta tgggttagct cttcagtgta tatttaacgg cggttcaatg 7051 ggccagttta cgtcgcgact gttattcagt ttcggcaact gcttaccgtt 7101 tgagctcttt agacacgttt gtagtgtgag gtggctgtca aagagcttag 7151 caatacgtgt tcgtaacgct agaatttgtg acgaagaaac ggtcgaacgt 7201 ttcttcagtt tttcgcgaat tttgtacgat tcgcgttact tatcggacgt 7251 gttttcggtg ttggagaggg tcgattttta cttaagttat ctattctcgt 7301 tgccgaagag gtgtcttacg cgtaaccgta gtgtccgagt tacgcgtcga 7351 gcgccagttc gcgtgattag ggacatgggg cttgtggaag acggcaagaa 7401 gtctttaacc gaggtgttga actctttgga ctcattgaaa gtgtccgacc 7451 gtaaagggaa gtcagcactt attgaaagtg atggttccga ctccgagagc 7501 ggtcattcat tcggttccat ttcattcgga tcggttaaag aggaagtttt 7551 agaagcagtg aacagtggtg tcgtatccga aaaagctcca ctgatgaagc 7601 atgcggatgc actaagcagg ttggagccag accttagtgg taaaaaggat 7651 cttcctattg tcaggagaag ttttacccgc ggtgaatcta caggtacgaa 7701 accggcagga agcttgtgtg tgtacttaac cacgttgaat tcttcattcg 7751 gttcggtgcc tgacctgtat cccgtcgcac gtgacataac gtacaagaag 7801 atgaccaacg ccatgccgaa gttttattac tcgcaaaagg taacgttgta 7851 cgaacttcat ggaaaattga gctcgtactg ggatgaattg aagacggtag 7901 gttttaatag gaagttggcg aagatggatt tagacgatga cgttgatgtc 7951 gtcgatttta acttgaaggt aatagtgggg aggcatggta cccgtccttt 8001 cagaaatact gtgaactctc acgagttcat gttttgtgat gacgggttgg 8051 tgctttgccc gggaccgaaa aaacgtgact ttgctctgat ctctagtcaa 8101 acgcaattcg ttgctgcgaa ctcattcctg cgtgctgtgg acggtaaaga 8151 tctgacgttc actaattcgg agcatagtct tatagtttat gaggctcgtc 8201 ccggtggtgg aaagacgcat tctttggtga cgtatttcgc ccgatatggt 8251 accaaagtgt cttgcttggt ggtgaccgct aacaaaaatt gtcaagcgga 8301 gatttctcaa agaatctcta gagagttaat ggatagaaag atgcttgcta 8351 aacacgttgt taaaaccgcc ggtagagtgt tcactgtgga ctcttatctg 8401 atgaaccata ttcgactcaa gactgacttg ttgtttgtcg atgtgtgttt 8451 tatggttcat gctggagcaa tcggagcggt tgttgagttc acttcacgta 8501 aggctgtggt tttcttcggt gatagtagac aaattcatta tattcaccgg 8551 aacgattttg gtgtttcatt gttgcatgac atagacgcat ttatagagcc 8601 acagcaccgc atttacggtg aggtgtccta caggtgtcct tgggacatct 8651 gtgagtggtt gtctaaattc tatccgagac atgtggccac tgctaacact 8701 ggtagtatcg ggagatcgag tgtgtctata gagataatta atgggtgtga 8751 cgatgttcct tacgatagta gcgcgaagta catcgtttac acacaagcag 8801 aaaagaacga actgcaaaag caccttggtc gtttaaccgt agccggaact 8851 aaagcggtgc ctattgtgaa cacagtgcat gaagttcaag gtgaaacata 8901 taagaaggtt cgtttggtaa ggtgcaaata ccaagaggac actccttcct 8951 gttcagataa ccatgttgtt gtggctttaa ccaggcacgt cgactcctta 9001 acttactccg ttttgaatag caggagatac gacaagaccg cttccagtat 9051 agatgaagcg agggagattt ttgacaaatt tcgttcgacg aaccattctc 9101 acggttgttc gacgttggaa tggtaccttg agaaataccc tactgaatat 9151 aagggtagta aagcatcttc ggcgccgtta agttgtatta acgagttgct 9201 taacgaggtc gttgtcggtt cttcggttgt gcagttggga gatacttcag 9251 aagaattaag ttcccgtcct tttgagtctg gatgtgacaa cattaccgta 9301 agggacactg caccccctga ttcaggtaat ctacacgaac cggctcgcgt 9351 tcggcgtggt aaggtcgcaa cgaattccgc caagaaaagc gtccctacaa 9401 gaaaatcttc tgtcgtacga aagtcgtaat tacaacttta taaagacgga 9451 gcgatttgtg gggcccgaaa atttcggtaa agtcatggct gcggctgtta 9501 ttgagaggtg ttttaggatg gacgaagtgg ccaagataag aagtgatgtt 9551 attgctttga ctgaagccaa tattcaaaag tggctcgata aacgtactcc 9601 gtgtcaggta aaatctgtgc aggccgaatt gaagttacca tttgctgtgg 9651 aagagcaaat caccaactac aaactaatgg ttaagcgtga tgccaaagta 9701 aagctagatg attcgagtct gtccaagcac cctgccgcac tgaatattat 9751 gtttcataag aagtttatta atgctattta ttctccatgc ttcgacgaat 9801 ttaagaatag ggtgttgtcg tcactaaacg gtaatatagt gttcttcacc 9851 gaaatgacga acgctggatt ggcggaagtc attagaagga ttataggtga 9901 tgacgataat ctttttgttg gggaagtgga tttcagtaag ttcgataagt 9951 ctcaagattt gtttgttaag gagtacgagc gtgcgttata tgctgagttc 10001 ggatttgatg cacaacttct cgacgtgtgg atggaaggcg agtaccgcgc 10051 tagggctacc acgttagacg gtcaactgag tttttcggtc gacggtcaac 10101 cgcgttcggg aggttcgaac acatggattg ggaactcttt ggttacactg 10151 ggtatcctat ccttgtatta cgacgactca aagttcgagc tactgcttat 10201 atctggtgac gattctctga tctattcaaa agaaaagatt agtaactttt 10251 cttcagaaat ttgtctggag acaggtttcg aaactaagtt tatgtctcct 10301 agcgtaccat acttttgttc gaagtttgtg gttcagacag ggaacaaaac 10351 gtgttttgta ccggaccctt acaagttgtt ggttaaactg ggggctcccc 10401 aatacaaatt gactgatgac gaactcttcg aattgttcac ttcctttaaa 10451 gacatcactc aggactttgg tgatcaggtg gtcctagaga aattgaagtt 10501 gttagtagag actaagtacg gctttactag cggaactact atgcccgctc 10551 tatgtgctat acattgtgta cggtctaatt atttgtcttt tgaaaggttg 10601 tttcccttta ttagaggttg gtatgttgtt gatgctttga agtttagaca 10651 actgaggaaa ttcgccaatt tgatctgtga acgtgtggtt tacgatcacc 10701 gcgtgggtta tttttcgtac tttgacaatc cgtttgctaa acccgacgct 10751 agcgatggtc aagccgatga cttagcgaca ggctgatagg ttaatacgct 10801 tctcagaacg tgtggttgta ttaactaact ttaattcgaa caaattattg 10851 ttaagagtct gcgagttacg atggacgata ctagcggaca aactttcatt 10901 tctgtgaact tttctgacga aagcaacaca gctagcactg aagtcaaaac 10951 cgtaagtttg gaagcggatc gcttggaatt tttacggaaa atgaatccct 11001 ttattatcga cgctttgata cggaaaacta gttatctggg tgctcgcttt 11051 cgcgcgagaa taataggagt gtgcgtggat tgtggtagaa aacacgataa 11101 ggcatcgagg actgaacgta agtgtaaagt caacaacaca caatctcaga 11151 acgaggtggc gcatatgtta atgcacgatc ccgtgaaata tttaaataaa 11201 agaaaagcta gagctttttc taacgcagag atgtttgcga tcgatttgtt 11251 tatgcatacc aaagaaaggc aattagcggt tgatttggcc gctgaaaggg 11301 agaagacgag attggctcgt agacacccga tgcgttctcc ggagaaaact 11351 ccggaacatt ataagttcgg tatgactgct aaggcaatgt taccgaacat 11401 caacgctata gacgttggtg ataacgaaga cacttcgtcg gaatacccag 11451 tgagtctgag tgtttcaggc ggagttctcc gtgaacacca cttcatctga 11501 ttgaagtgga cggaataagt tccttgcgga actttatgtc gggttggtaa 11551 aaacccttat gatggtgatg tatcactaga caataaccgg atgggtaaag 11601 tctttaaaat gatcgagggg aaaattaacc atatcctctc gttggtctaa 11651 gctcccacag agtgtagtgg tctcaagtga ggcttaacgt atgcgtgaac 11701 caaagaagtt ctccttagag tgtgtgttgt ttacccaaca cactgtccct 11751 atggggggcc aacataggtc ca