Sequence of DPV Cryphonectria cubensis mitovirus 1a
Cryphonectria cubensis mitovirus 1a RNA-dependent RNA polymerase gene, complete cds.
ACC No: AY328476
Dated: 2004-07-02 | Length: 2555 | CRC: 618951549
!!NA_SEQUENCE 1.0
ID AY328476 standard; genomic RNA; VRL; 2555 BP.
XX
AC AY328476;
XX
SV AY328476.1
XX
DT 02-JUL-2004 (Rel. 80, Created)
DT 02-JUL-2004 (Rel. 80, Last updated, Version 1)
XX
DE Cryphonectria cubensis mitovirus 1a RNA-dependent RNA polymerase gene,
DE complete cds.
XX
KW .
XX
OS Cryphonectria cubensis mitovirus 1a
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Narnaviridae;
OC Mitovirus.
XX
RN [1]
RP 1-2555
RA van Heerden S.W., Preisig O., Wingfield B.D., Wingfield M.J.;
RT "Molecular characterization of mitoviruses co-infecting South African
RT isolates of the Eucalyptus canker pathogen Cryphonectria cubensis";
RL Unpublished.
XX
RN [2]
RP 1-2555
RA van Heerden S.W., Preisig O., Wingfield B.D., Wingfield M.J.;
RT ;
RL Submitted (24-JUN-2003) to the EMBL/GenBank/DDBJ databases.
RL Department of Genetics, Forestry and Agricultural Biotechnology Institute,
RL University of Pretoria, Pretoria, Gauteng 0001, Republic of South Africa
XX
FH Key Location/Qualifiers
FH
FT source 1. .2555
FT /db_xref="taxon:249052"
FT /mol_type="genomic RNA"
FT /organism="Cryphonectria cubensis mitovirus 1a"
FT CDS 138. .2372
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:Q6EH21"
FT /transl_table=4
FT /product="RNA-dependent RNA polymerase"
FT /protein_id="AAR01970.1"
FT /translation="MTKADHYSSASSDPPRWTDCCHNTRQHQPTFAIKWIITKTMKRNL
FT NKLYIHLNLLRDIGAIKLSLVWFLHWSHLELGIASRLVSSAVARFQLLATTRGRNAAIS
FT EFKASRLAFTRWLCGRPLSGKVGAPITKAGLPKVIPREARLLLLRERPLYLVKAVITVL
FT SIGRYFKGGNPVKWENITKPSTPTLPKDGEILFGLEKLNIDVGQFEPTDWKFRWVVTAG
FT PNGPSISSCLQDLPKFNGLFRSQVEVILPELLPIIDTLLTWEKSFKLSTLMGLAGFKDD
FT SLRKIAIKDDREGKSRPFAIFDYWSQTVLSPLHDWAYATLRSIPQDCTFNQAEGLSKVT
FT ARPSQKYFYSYDLEAATDRFPIQFQKKVLSLIFNTTYAQAWAEIMTQEPFRVKGLSDPL
FT RWGAGQPLGAKSSWAIFTLCHHLVVHIAAVRTNSDPYYVILGDDIVLRGSRLATVYKRI
FT MSELGVSISETKSHVSKDTFEFAKMWMHQGRNASGFPVVGLAETLRKPLEMAALFVFEL
FT PAKGYPVTITPRTVSQYFLLVARYNTIPPRLAVWTADKVVWYYSFLSWLATRDDGWAKY
FT IAQSASLLVSPNTAHDLLMKAVRDKWAKQLDKSLMDFQDFGFDMFDKVKTLPPFKPTWD
FT PEAWPGRLSASGIEFNPAPRKVPIFAALQEEGEIKYSDYLQQKLEMTDDQLTFEEIESL
FT KLPPRPQLKGFLPKRTREYVRTLNLISHGLNRDLRAQCIGTRPDVYNMKD"
XX
SQ Sequence 2555 BP; 702 A; 633 C; 615 G; 605 T; 0 other;
AY328476 Length: 2555 October 20, 2004 11:42 Type: N Check: 1058 ..
1 cttagcccct tgccccggtt tcccggggaa ggcaacggag aaggggtgac
51 aggacccgaa aggccccact tgtcaatcat ccgttccgtg tccactagct
101 gctgactgtt actgactagc cttgtaacaa caaagggata accaaagctg
151 accactactc aagtgcgagc agcgacccgc caaggtgaac cgattgctgt
201 cataatacta ggcagcacca gcccacgttt gctataaaat gaattataac
251 aaaaaccatg aaaagaaatc tcaataaact ctatatacac ctaaatctct
301 tacgagacat cggtgcaata aaattgagtc tagtgtgatt ccttcactga
351 tcccaccttg agctaggtat agcgtcacgt ctcgtctctt ccgcggtagc
401 cagatttcaa cttctggcca ccacgagagg gcggaacgcc gctatatccg
451 agtttaaggc gtcgcggcta gcgtttacac gatgactctg tgggcggccg
501 ctctcaggta aagttggtgc cccgataaca aaagctgggc ttcctaaggt
551 aatccctagg gaggccagac ttttgttgct tcgggaacgc cctctttact
601 tggtaaaggc cgtcataacg gtgctatcga tcgggcgtta ttttaagggt
651 ggaaaccctg taaagtggga gaatattacg aagccgtcaa ctcctaccct
701 cccaaaagat ggagaaatcc tctttgggtt ggagaagttg aacattgacg
751 tcgggcagtt cgagccaacg gattggaaat tccgttgagt cgtgacagcc
801 gggccaaatg ggccaagtat atcttcctgc ttacaggacc tcccgaaatt
851 taacggtctc ttcaggtccc aggtagaagt cattctacct gagctccttc
901 ccatcattga taccctattg acctgggaga aaagctttaa gctgtcaacc
951 cttatgggat tggcaggctt taaagacgat tccctccgga aaatagctat
1001 caaggatgat agggagggta agagtagacc ttttgcgata ttcgattact
1051 gatcccagac agttttatca cctctgcatg actgagcgta cgcgaccctg
1101 aggtcaattc ctcaggattg cacgttcaac caggcagagg gactgtcgaa
1151 ggtcacagct cggccatcgc aaaagtattt ctattcttac gaccttgaag
1201 cggcaacaga ccgttttccg atacaatttc agaaaaaggt tctgtccctg
1251 atctttaaca ctacttatgc ccaggcgtga gctgagataa tgactcaaga
1301 gccttttaga gtcaagggat tgtccgaccc cttaagatga ggagccgggc
1351 agcctcttgg agctaaaagt tcctgagcca ttttcacatt atgccaccac
1401 ctagtagttc atatagcagc ggtacggact aactccgacc cctactacgt
1451 gatactaggc gatgacatag tgctccgtgg ctcacggctg gcgacagtgt
1501 acaaacggat aatgtccgaa cttggagtat ccatatccga aacgaaatcg
1551 cacgtgtcaa aagacacgtt cgaattcgct aagatgtgaa tgcaccaagg
1601 taggaacgcg agtgggttcc ctgtagtggg actagctgag acactcagaa
1651 agccactaga aatggcggct ctctttgtgt ttgagctccc tgctaaaggg
1701 tatccagtca ctattactcc gcgcaccgtg tcgcagtact tccttctagt
1751 agcacgttat aataccattc cacctcgtct ggcggtatga actgccgaca
1801 aagtggtatg gtactatagt ttcttgtcat gactggccac ccgggatgac
1851 ggatgggcga aatatatcgc ccagtcggcc tccctattgg tgagccccaa
1901 taccgcccac gacctcctta tgaaggccgt gagagataaa tgggctaaac
1951 agcttgacaa gtctctaatg gatttccagg attttggatt tgatatgttc
2001 gacaaagtga agaccttgcc gccattcaag cctacctggg atccagaagc
2051 gtgacctggt cggttgtctg cgagtggaat cgaattcaat ccagccccta
2101 ggaaggtacc aatatttgct gctctccaag aagaaggaga gatcaagtat
2151 tccgattatc tccaacagaa gttggagatg accgacgatc agctgacgtt
2201 cgaggagata gaatctttga aactacctcc tcgtccgcaa ctgaaagggt
2251 tccttccgaa aaggactaga gagtatgttc gtacacttaa cctaattagt
2301 cacggcttaa accgggatct aagggctcag tgcataggaa ccagaccaga
2351 cgtatacaat atgaaagact aagaggttct ccctcccacc ttgagaaagt
2401 ggtgaaagct ctccttagcc cctacacatt gtgtaccccc attccccttt
2451 cggggtaggc agaagtcaac tgcttgctcc ggcagggatg ccggatggga
2501 agtcgacagc gctggggcaa aaaaaaaaaa aaaaaaaaga aaaaaaaaag
2551 aaaaa