Sequence of DPV Cryphonectria cubensis mitovirus 1a

Cryphonectria cubensis mitovirus 1a RNA-dependent RNA polymerase gene, complete cds.

ACC No: AY328476

Dated: 2004-07-02 | Length: 2555 | CRC: 618951549

                !!NA_SEQUENCE 1.0
ID   AY328476   standard; genomic RNA; VRL; 2555 BP.
XX
AC   AY328476;
XX
SV   AY328476.1
XX
DT   02-JUL-2004 (Rel. 80, Created)
DT   02-JUL-2004 (Rel. 80, Last updated, Version 1)
XX
DE   Cryphonectria cubensis mitovirus 1a RNA-dependent RNA polymerase gene,
DE   complete cds.
XX
KW   .
XX
OS   Cryphonectria cubensis mitovirus 1a
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Narnaviridae;
OC   Mitovirus.
XX
RN   [1]
RP   1-2555
RA   van Heerden S.W., Preisig O., Wingfield B.D., Wingfield M.J.;
RT   "Molecular characterization of mitoviruses co-infecting South African
RT   isolates of the Eucalyptus canker pathogen Cryphonectria cubensis";
RL   Unpublished.
XX
RN   [2]
RP   1-2555
RA   van Heerden S.W., Preisig O., Wingfield B.D., Wingfield M.J.;
RT   ;
RL   Submitted (24-JUN-2003) to the EMBL/GenBank/DDBJ databases.
RL   Department of Genetics, Forestry and Agricultural Biotechnology Institute,
RL   University of Pretoria, Pretoria, Gauteng 0001, Republic of South Africa
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2555
FT                   /db_xref="taxon:249052"
FT                   /mol_type="genomic RNA"
FT                   /organism="Cryphonectria cubensis mitovirus 1a"
FT   CDS             138. .2372
FT                   /codon_start=1
FT                   /db_xref="UniProt/TrEMBL:Q6EH21"
FT                   /transl_table=4
FT                   /product="RNA-dependent RNA polymerase"
FT                   /protein_id="AAR01970.1"
FT                   /translation="MTKADHYSSASSDPPRWTDCCHNTRQHQPTFAIKWIITKTMKRNL
FT                   NKLYIHLNLLRDIGAIKLSLVWFLHWSHLELGIASRLVSSAVARFQLLATTRGRNAAIS
FT                   EFKASRLAFTRWLCGRPLSGKVGAPITKAGLPKVIPREARLLLLRERPLYLVKAVITVL
FT                   SIGRYFKGGNPVKWENITKPSTPTLPKDGEILFGLEKLNIDVGQFEPTDWKFRWVVTAG
FT                   PNGPSISSCLQDLPKFNGLFRSQVEVILPELLPIIDTLLTWEKSFKLSTLMGLAGFKDD
FT                   SLRKIAIKDDREGKSRPFAIFDYWSQTVLSPLHDWAYATLRSIPQDCTFNQAEGLSKVT
FT                   ARPSQKYFYSYDLEAATDRFPIQFQKKVLSLIFNTTYAQAWAEIMTQEPFRVKGLSDPL
FT                   RWGAGQPLGAKSSWAIFTLCHHLVVHIAAVRTNSDPYYVILGDDIVLRGSRLATVYKRI
FT                   MSELGVSISETKSHVSKDTFEFAKMWMHQGRNASGFPVVGLAETLRKPLEMAALFVFEL
FT                   PAKGYPVTITPRTVSQYFLLVARYNTIPPRLAVWTADKVVWYYSFLSWLATRDDGWAKY
FT                   IAQSASLLVSPNTAHDLLMKAVRDKWAKQLDKSLMDFQDFGFDMFDKVKTLPPFKPTWD
FT                   PEAWPGRLSASGIEFNPAPRKVPIFAALQEEGEIKYSDYLQQKLEMTDDQLTFEEIESL
FT                   KLPPRPQLKGFLPKRTREYVRTLNLISHGLNRDLRAQCIGTRPDVYNMKD"
XX
SQ   Sequence 2555 BP; 702 A; 633 C; 615 G; 605 T; 0 other;

AY328476  Length: 2555  October 20, 2004 11:42  Type: N  Check: 1058  ..

       1  cttagcccct tgccccggtt tcccggggaa ggcaacggag aaggggtgac
      51  aggacccgaa aggccccact tgtcaatcat ccgttccgtg tccactagct
     101  gctgactgtt actgactagc cttgtaacaa caaagggata accaaagctg
     151  accactactc aagtgcgagc agcgacccgc caaggtgaac cgattgctgt
     201  cataatacta ggcagcacca gcccacgttt gctataaaat gaattataac
     251  aaaaaccatg aaaagaaatc tcaataaact ctatatacac ctaaatctct
     301  tacgagacat cggtgcaata aaattgagtc tagtgtgatt ccttcactga
     351  tcccaccttg agctaggtat agcgtcacgt ctcgtctctt ccgcggtagc
     401  cagatttcaa cttctggcca ccacgagagg gcggaacgcc gctatatccg
     451  agtttaaggc gtcgcggcta gcgtttacac gatgactctg tgggcggccg
     501  ctctcaggta aagttggtgc cccgataaca aaagctgggc ttcctaaggt
     551  aatccctagg gaggccagac ttttgttgct tcgggaacgc cctctttact
     601  tggtaaaggc cgtcataacg gtgctatcga tcgggcgtta ttttaagggt
     651  ggaaaccctg taaagtggga gaatattacg aagccgtcaa ctcctaccct
     701  cccaaaagat ggagaaatcc tctttgggtt ggagaagttg aacattgacg
     751  tcgggcagtt cgagccaacg gattggaaat tccgttgagt cgtgacagcc
     801  gggccaaatg ggccaagtat atcttcctgc ttacaggacc tcccgaaatt
     851  taacggtctc ttcaggtccc aggtagaagt cattctacct gagctccttc
     901  ccatcattga taccctattg acctgggaga aaagctttaa gctgtcaacc
     951  cttatgggat tggcaggctt taaagacgat tccctccgga aaatagctat
    1001  caaggatgat agggagggta agagtagacc ttttgcgata ttcgattact
    1051  gatcccagac agttttatca cctctgcatg actgagcgta cgcgaccctg
    1101  aggtcaattc ctcaggattg cacgttcaac caggcagagg gactgtcgaa
    1151  ggtcacagct cggccatcgc aaaagtattt ctattcttac gaccttgaag
    1201  cggcaacaga ccgttttccg atacaatttc agaaaaaggt tctgtccctg
    1251  atctttaaca ctacttatgc ccaggcgtga gctgagataa tgactcaaga
    1301  gccttttaga gtcaagggat tgtccgaccc cttaagatga ggagccgggc
    1351  agcctcttgg agctaaaagt tcctgagcca ttttcacatt atgccaccac
    1401  ctagtagttc atatagcagc ggtacggact aactccgacc cctactacgt
    1451  gatactaggc gatgacatag tgctccgtgg ctcacggctg gcgacagtgt
    1501  acaaacggat aatgtccgaa cttggagtat ccatatccga aacgaaatcg
    1551  cacgtgtcaa aagacacgtt cgaattcgct aagatgtgaa tgcaccaagg
    1601  taggaacgcg agtgggttcc ctgtagtggg actagctgag acactcagaa
    1651  agccactaga aatggcggct ctctttgtgt ttgagctccc tgctaaaggg
    1701  tatccagtca ctattactcc gcgcaccgtg tcgcagtact tccttctagt
    1751  agcacgttat aataccattc cacctcgtct ggcggtatga actgccgaca
    1801  aagtggtatg gtactatagt ttcttgtcat gactggccac ccgggatgac
    1851  ggatgggcga aatatatcgc ccagtcggcc tccctattgg tgagccccaa
    1901  taccgcccac gacctcctta tgaaggccgt gagagataaa tgggctaaac
    1951  agcttgacaa gtctctaatg gatttccagg attttggatt tgatatgttc
    2001  gacaaagtga agaccttgcc gccattcaag cctacctggg atccagaagc
    2051  gtgacctggt cggttgtctg cgagtggaat cgaattcaat ccagccccta
    2101  ggaaggtacc aatatttgct gctctccaag aagaaggaga gatcaagtat
    2151  tccgattatc tccaacagaa gttggagatg accgacgatc agctgacgtt
    2201  cgaggagata gaatctttga aactacctcc tcgtccgcaa ctgaaagggt
    2251  tccttccgaa aaggactaga gagtatgttc gtacacttaa cctaattagt
    2301  cacggcttaa accgggatct aagggctcag tgcataggaa ccagaccaga
    2351  cgtatacaat atgaaagact aagaggttct ccctcccacc ttgagaaagt
    2401  ggtgaaagct ctccttagcc cctacacatt gtgtaccccc attccccttt
    2451  cggggtaggc agaagtcaac tgcttgctcc ggcagggatg ccggatggga
    2501  agtcgacagc gctggggcaa aaaaaaaaaa aaaaaaaaga aaaaaaaaag
    2551  aaaaa