Sequence of DPV Cryphonectria cubensis mitovirus 1b

Cryphonectria cubensis mitovirus 1b RNA-dependent RNA polymerase gene, complete cds.

ACC No: AY328477

Dated: 2004-07-02 | Length: 2601 | CRC: 1400750616

                !!NA_SEQUENCE 1.0
ID   AY328477   standard; genomic RNA; VRL; 2601 BP.
XX
AC   AY328477;
XX
SV   AY328477.1
XX
DT   02-JUL-2004 (Rel. 80, Created)
DT   02-JUL-2004 (Rel. 80, Last updated, Version 1)
XX
DE   Cryphonectria cubensis mitovirus 1b RNA-dependent RNA polymerase gene,
DE   complete cds.
XX
KW   .
XX
OS   Cryphonectria cubensis mitovirus 1b
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Narnaviridae;
OC   Mitovirus.
XX
RN   [1]
RP   1-2601
RA   van Heerden S.W., Preisig O., Wingfield B.D., Wingfield M.J.;
RT   "Molecular characterization of mitoviruses co-infecting South African
RT   isolates of the Eucalyptus canker pathogen Cryphonectria cubensis";
RL   Unpublished.
XX
RN   [2]
RP   1-2601
RA   van Heerden S.W., Preisig O., Wingfield B.D., Wingfield M.J.;
RT   ;
RL   Submitted (24-JUN-2003) to the EMBL/GenBank/DDBJ databases.
RL   Department of Genetics, Forestry and Agricultural Biotechnology Institute,
RL   University of Pretoria, Pretoria, Gauteng 0001, Republic of South Africa
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2601
FT                   /db_xref="taxon:249053"
FT                   /mol_type="genomic RNA"
FT                   /organism="Cryphonectria cubensis mitovirus 1b"
FT   CDS             184. .2418
FT                   /codon_start=1
FT                   /db_xref="UniProt/TrEMBL:Q6EH20"
FT                   /transl_table=4
FT                   /product="RNA-dependent RNA polymerase"
FT                   /protein_id="AAR01971.1"
FT                   /translation="MTKADHYSSASSDPPRWTDCCHNTRQHQPTFAIKWIITKTMKRNL
FT                   NKLYIHLNLLRDIGAIKLSLVWFLHWSHLELGIASRLVSSAVARFQLLATTRGRNAAIS
FT                   EFKASRLAFTRWLCGRPLSGKVGAPITKAGLPKVIPREARLLLLRERPLYLVKAVITVL
FT                   SIGRYFKGGNPVKWENITKPSTPTLPKDGEILFGLEKLNIDVGQFEPTDWKFRWVVTAG
FT                   PNGPSISSCLQDLPKFNGLFRSQVEVILPELLPIIDTLLTWEKSFKLSTLMGLAGFKDD
FT                   SLRKIAIKDDREGKSRPFAIFDYWSQTVLSPLHDWAYATLRSIPQDCTFNQAEGLSKVT
FT                   ARPSQKYFYSYDLEAATDRFPIQFQKKVLSLIFNTTYAQAWAEIMTQEPFRVKGLSDPL
FT                   RWGAGQPLGAKSSWAIFTLCHHLVVHIAAVRTNSDPYYVILGDDIVLRGSRLATVYKRI
FT                   MSELGVSISETKSHVSKDTFEFAKMWMHQGRNASGFPVVGLAETLRKPLEMAALFVFEL
FT                   PAKGYPVTITPRTVSQYFLLVARYNTIPPRLAVWTADKVVWYYSFLSWLATRDDGWAKY
FT                   IAQSASLLVSPNTAHDLLMKAVRDKWAKQLDKSLMDFQDFGFDMFDKVKTLPPFKPTWD
FT                   PEAWPGRLSASGIEFNPAPRKVPIFAALQEEGEIKYSDYLQQKLEMTDDQLTFEEIESL
FT                   KLPPRPQLKGFLPKRTREYVRTLNLISHGLNRDLRAQCIGTRPDVYNMKD"
XX
SQ   Sequence 2601 BP; 701 A; 639 C; 614 G; 647 T; 0 other;

AY328477  Length: 2601  October 20, 2004 11:42  Type: N  Check: 2012  ..

       1  cttttttttt ttttttttct ttcttctttt tttttttttt cttttttttc
      51  cccccttgcc ccggtttccc ggggaaggca acggagaagg ggtgacagga
     101  cccgaaaggc cccacttgtc aatcatccgt tccgtgtcca ctagctgctg
     151  actgttactg actagccttg taacaacaaa gggataacca aagctgacca
     201  ctactcaagt gcgagcagcg acccgccaag gtgaaccgat tgctgtcata
     251  atactaggca gcaccagccc acgtttgcta taaaatgaat tataacaaaa
     301  accatgaaaa gaaatctcaa taaactctat atacacctaa atctcttacg
     351  agacatcggt gcaataaaat tgagtctagt gtgattcctt cactgatccc
     401  accttgagct aggtatagcg tcacgtctcg tctcttccgc ggtagccaga
     451  tttcaacttc tggccaccac gagagggcgg aacgccgcta tatccgagtt
     501  taaggcgtcg cggctagcgt ttacacgatg actctgtggg cggccgctct
     551  caggtaaagt tggtgccccg ataacaaaag ctgggcttcc taaggtaatc
     601  cctagggagg ccagactttt gttgcttcgg gaacgccctc tttacttggt
     651  aaaggccgtc ataacggtgc tatcgatcgg gcgttatttt aagggtggaa
     701  accctgtaaa gtgggagaat attacgaagc cgtcaactcc taccctccca
     751  aaagatggag aaatcctctt tgggttggag aagttgaaca ttgacgtcgg
     801  gcagttcgag ccaacggatt ggaaattccg ttgagtcgtg acagccgggc
     851  caaatgggcc aagtatatct tcctgcttac aggacctccc gaaatttaac
     901  ggtctcttca ggtcccaggt agaagtcatt ctacctgagc tccttcccat
     951  cattgatacc ctattgacct gggagaaaag ctttaagctg tcaaccctta
    1001  tgggattggc aggctttaaa gacgattccc tccggaaaat agctatcaag
    1051  gatgataggg agggtaagag tagacctttt gcgatattcg attactgatc
    1101  ccagacagtt ttatcacctc tgcatgactg agcgtacgcg accctgaggt
    1151  caattcctca ggattgcacg ttcaaccagg cagagggact gtcgaaggtc
    1201  acagctcggc catcgcaaaa gtatttctat tcttacgacc ttgaagcggc
    1251  aacagaccgt tttccgatac aatttcagaa aaaggttctg tccctgatct
    1301  ttaacactac ttatgcccag gcgtgagctg agataatgac tcaagagcct
    1351  tttagagtca agggattgtc cgacccctta agatgaggag ccgggcagcc
    1401  tcttggagct aaaagttcct gagccatttt cacattatgc caccacctag
    1451  tagttcatat agcagcggta cggactaact ccgaccccta ctacgtgata
    1501  ctaggcgatg acatagtgct ccgtggctca cggctggcga cagtgtacaa
    1551  acggataatg tccgaacttg gagtatccat atccgaaacg aaatcgcacg
    1601  tgtcaaaaga cacgttcgaa ttcgctaaga tgtgaatgca ccaaggtagg
    1651  aacgcgagtg ggttccctgt agtgggacta gctgagacac tcagaaagcc
    1701  actagaaatg gcggctctct ttgtgtttga gctccctgct aaagggtatc
    1751  cagtcactat tactccgcgc accgtgtcgc agtacttcct tctagtagca
    1801  cgttataata ccattccacc tcgtctggcg gtatgaactg ccgacaaagt
    1851  ggtatggtac tatagtttct tgtcatgact ggccacccgg gatgacggat
    1901  gggcgaaata tatcgcccag tcggcctccc tattggtgag ccccaatacc
    1951  gcccacgacc tccttatgaa ggccgtgaga gataaatggg ctaaacagct
    2001  tgacaagtct ctaatggatt tccaggattt tggatttgat atgttcgaca
    2051  aagtgaagac cttgccgcca ttcaagccta cctgggatcc agaagcgtga
    2101  cctggtcggt tgtctgcgag tggaatcgaa ttcaatccag cccctaggaa
    2151  ggtaccaata tttgctgctc tccaagaaga aggagagatc aagtattccg
    2201  attatctcca acagaagttg gagatgaccg acgatcagct gacgttcgag
    2251  gagatagaat ctttgaaact acctcctcgt ccgcaactga aagggttcct
    2301  tccgaaaagg actagagagt atgttcgtac acttaaccta attagtcacg
    2351  gcttaaaccg ggatctaagg gctcagtgca taggaaccag accagacgta
    2401  tacaatatga aagactaaga ggttctccct cccaccttga gaaagtggtg
    2451  aaagctctcc ttagccccta cacattgtgt acccccattc ccctttcggg
    2501  gtaggcagaa gtcaactgct tgctccggca gggatgccgg atgggaagtc
    2551  gacagcgctg gggcaaaaaa aaaaaaaaaa aaaagaaaaa aaaaagaaaa
    2601  a