Sequence of DPV Cryphonectria cubensis mitovirus 1b
Cryphonectria cubensis mitovirus 1b RNA-dependent RNA polymerase gene, complete cds.
ACC No: AY328477
Dated: 2004-07-02 | Length: 2601 | CRC: 1400750616
!!NA_SEQUENCE 1.0
ID AY328477 standard; genomic RNA; VRL; 2601 BP.
XX
AC AY328477;
XX
SV AY328477.1
XX
DT 02-JUL-2004 (Rel. 80, Created)
DT 02-JUL-2004 (Rel. 80, Last updated, Version 1)
XX
DE Cryphonectria cubensis mitovirus 1b RNA-dependent RNA polymerase gene,
DE complete cds.
XX
KW .
XX
OS Cryphonectria cubensis mitovirus 1b
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Narnaviridae;
OC Mitovirus.
XX
RN [1]
RP 1-2601
RA van Heerden S.W., Preisig O., Wingfield B.D., Wingfield M.J.;
RT "Molecular characterization of mitoviruses co-infecting South African
RT isolates of the Eucalyptus canker pathogen Cryphonectria cubensis";
RL Unpublished.
XX
RN [2]
RP 1-2601
RA van Heerden S.W., Preisig O., Wingfield B.D., Wingfield M.J.;
RT ;
RL Submitted (24-JUN-2003) to the EMBL/GenBank/DDBJ databases.
RL Department of Genetics, Forestry and Agricultural Biotechnology Institute,
RL University of Pretoria, Pretoria, Gauteng 0001, Republic of South Africa
XX
FH Key Location/Qualifiers
FH
FT source 1. .2601
FT /db_xref="taxon:249053"
FT /mol_type="genomic RNA"
FT /organism="Cryphonectria cubensis mitovirus 1b"
FT CDS 184. .2418
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:Q6EH20"
FT /transl_table=4
FT /product="RNA-dependent RNA polymerase"
FT /protein_id="AAR01971.1"
FT /translation="MTKADHYSSASSDPPRWTDCCHNTRQHQPTFAIKWIITKTMKRNL
FT NKLYIHLNLLRDIGAIKLSLVWFLHWSHLELGIASRLVSSAVARFQLLATTRGRNAAIS
FT EFKASRLAFTRWLCGRPLSGKVGAPITKAGLPKVIPREARLLLLRERPLYLVKAVITVL
FT SIGRYFKGGNPVKWENITKPSTPTLPKDGEILFGLEKLNIDVGQFEPTDWKFRWVVTAG
FT PNGPSISSCLQDLPKFNGLFRSQVEVILPELLPIIDTLLTWEKSFKLSTLMGLAGFKDD
FT SLRKIAIKDDREGKSRPFAIFDYWSQTVLSPLHDWAYATLRSIPQDCTFNQAEGLSKVT
FT ARPSQKYFYSYDLEAATDRFPIQFQKKVLSLIFNTTYAQAWAEIMTQEPFRVKGLSDPL
FT RWGAGQPLGAKSSWAIFTLCHHLVVHIAAVRTNSDPYYVILGDDIVLRGSRLATVYKRI
FT MSELGVSISETKSHVSKDTFEFAKMWMHQGRNASGFPVVGLAETLRKPLEMAALFVFEL
FT PAKGYPVTITPRTVSQYFLLVARYNTIPPRLAVWTADKVVWYYSFLSWLATRDDGWAKY
FT IAQSASLLVSPNTAHDLLMKAVRDKWAKQLDKSLMDFQDFGFDMFDKVKTLPPFKPTWD
FT PEAWPGRLSASGIEFNPAPRKVPIFAALQEEGEIKYSDYLQQKLEMTDDQLTFEEIESL
FT KLPPRPQLKGFLPKRTREYVRTLNLISHGLNRDLRAQCIGTRPDVYNMKD"
XX
SQ Sequence 2601 BP; 701 A; 639 C; 614 G; 647 T; 0 other;
AY328477 Length: 2601 October 20, 2004 11:42 Type: N Check: 2012 ..
1 cttttttttt ttttttttct ttcttctttt tttttttttt cttttttttc
51 cccccttgcc ccggtttccc ggggaaggca acggagaagg ggtgacagga
101 cccgaaaggc cccacttgtc aatcatccgt tccgtgtcca ctagctgctg
151 actgttactg actagccttg taacaacaaa gggataacca aagctgacca
201 ctactcaagt gcgagcagcg acccgccaag gtgaaccgat tgctgtcata
251 atactaggca gcaccagccc acgtttgcta taaaatgaat tataacaaaa
301 accatgaaaa gaaatctcaa taaactctat atacacctaa atctcttacg
351 agacatcggt gcaataaaat tgagtctagt gtgattcctt cactgatccc
401 accttgagct aggtatagcg tcacgtctcg tctcttccgc ggtagccaga
451 tttcaacttc tggccaccac gagagggcgg aacgccgcta tatccgagtt
501 taaggcgtcg cggctagcgt ttacacgatg actctgtggg cggccgctct
551 caggtaaagt tggtgccccg ataacaaaag ctgggcttcc taaggtaatc
601 cctagggagg ccagactttt gttgcttcgg gaacgccctc tttacttggt
651 aaaggccgtc ataacggtgc tatcgatcgg gcgttatttt aagggtggaa
701 accctgtaaa gtgggagaat attacgaagc cgtcaactcc taccctccca
751 aaagatggag aaatcctctt tgggttggag aagttgaaca ttgacgtcgg
801 gcagttcgag ccaacggatt ggaaattccg ttgagtcgtg acagccgggc
851 caaatgggcc aagtatatct tcctgcttac aggacctccc gaaatttaac
901 ggtctcttca ggtcccaggt agaagtcatt ctacctgagc tccttcccat
951 cattgatacc ctattgacct gggagaaaag ctttaagctg tcaaccctta
1001 tgggattggc aggctttaaa gacgattccc tccggaaaat agctatcaag
1051 gatgataggg agggtaagag tagacctttt gcgatattcg attactgatc
1101 ccagacagtt ttatcacctc tgcatgactg agcgtacgcg accctgaggt
1151 caattcctca ggattgcacg ttcaaccagg cagagggact gtcgaaggtc
1201 acagctcggc catcgcaaaa gtatttctat tcttacgacc ttgaagcggc
1251 aacagaccgt tttccgatac aatttcagaa aaaggttctg tccctgatct
1301 ttaacactac ttatgcccag gcgtgagctg agataatgac tcaagagcct
1351 tttagagtca agggattgtc cgacccctta agatgaggag ccgggcagcc
1401 tcttggagct aaaagttcct gagccatttt cacattatgc caccacctag
1451 tagttcatat agcagcggta cggactaact ccgaccccta ctacgtgata
1501 ctaggcgatg acatagtgct ccgtggctca cggctggcga cagtgtacaa
1551 acggataatg tccgaacttg gagtatccat atccgaaacg aaatcgcacg
1601 tgtcaaaaga cacgttcgaa ttcgctaaga tgtgaatgca ccaaggtagg
1651 aacgcgagtg ggttccctgt agtgggacta gctgagacac tcagaaagcc
1701 actagaaatg gcggctctct ttgtgtttga gctccctgct aaagggtatc
1751 cagtcactat tactccgcgc accgtgtcgc agtacttcct tctagtagca
1801 cgttataata ccattccacc tcgtctggcg gtatgaactg ccgacaaagt
1851 ggtatggtac tatagtttct tgtcatgact ggccacccgg gatgacggat
1901 gggcgaaata tatcgcccag tcggcctccc tattggtgag ccccaatacc
1951 gcccacgacc tccttatgaa ggccgtgaga gataaatggg ctaaacagct
2001 tgacaagtct ctaatggatt tccaggattt tggatttgat atgttcgaca
2051 aagtgaagac cttgccgcca ttcaagccta cctgggatcc agaagcgtga
2101 cctggtcggt tgtctgcgag tggaatcgaa ttcaatccag cccctaggaa
2151 ggtaccaata tttgctgctc tccaagaaga aggagagatc aagtattccg
2201 attatctcca acagaagttg gagatgaccg acgatcagct gacgttcgag
2251 gagatagaat ctttgaaact acctcctcgt ccgcaactga aagggttcct
2301 tccgaaaagg actagagagt atgttcgtac acttaaccta attagtcacg
2351 gcttaaaccg ggatctaagg gctcagtgca taggaaccag accagacgta
2401 tacaatatga aagactaaga ggttctccct cccaccttga gaaagtggtg
2451 aaagctctcc ttagccccta cacattgtgt acccccattc ccctttcggg
2501 gtaggcagaa gtcaactgct tgctccggca gggatgccgg atgggaagtc
2551 gacagcgctg gggcaaaaaa aaaaaaaaaa aaaagaaaaa aaaaagaaaa
2601 a