Sequence of DPV Havel River virus
Havel river tombusvirus strain S coat protein and movement protein genes, complete cds; and unknown gene.
ACC No: AY370535
Dated: 2005-04-16 | Length: 2088 | CRC: -1448649477
!!NA_SEQUENCE 1.0
ID AY370535 standard; genomic RNA; VRL; 2088 BP.
XX
AC AY370535;
XX
SV AY370535.1
XX
DT 01-SEP-2004 (Rel. 81, Created)
DT 16-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE Havel river tombusvirus strain S coat protein and movement protein genes,
DE complete cds; and unknown gene.
XX
KW .
XX
OS Havel river tombusvirus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Tombusvirus.
XX
RN [1]
RP 1-2088
RA Koenig R.;
RT "Isolation of two strains of a new tombusvirus (Havel river virus, HaRV)
RT from surface waters in Germany";
RL Eur. J. Plant Pathol. 0:0-0(2004).
XX
RN [2]
RP 1-2088
RA Koenig R.;
RT ;
RL Submitted (18-AUG-2003) to the EMBL/GenBank/DDBJ databases.
RL Institut fuer Pflanzenvirologie, Mikrobiologie und biologische Sicherheit,
RL Biologische Bundesanstalt fur Land- und Forstwirtschaft, Messeweg 11,
RL Braunschweig D38104, Germany
XX
FH Key Location/Qualifiers
FH
FT source 1. .2088
FT /db_xref="taxon:254711"
FT /mol_type="genomic RNA"
FT /organism="Havel river tombusvirus"
FT /strain="S"
FT CDS 19. .1161
FT /codon_start=1
FT /db_xref="GOA:Q67BT1"
FT /db_xref="InterPro:IPR000937"
FT /db_xref="UniProt/TrEMBL:Q67BT1"
FT /product="coat protein"
FT /protein_id="AAR26609.1"
FT /translation="MSIVTRNSDRALARLAAPAAMAGARMIVENKEVLWNGAKWIWANL
FT PKRKKGNKSNGGLISHPQTLPGAIAAPISYAYPVRGRKPKFQASKGSVRITHREYISVI
FT EGNTDGNFVVNNGSGASNDFSINPLNPFVFPWLVSIASNFDQYTFRSLKFEYIPLANTG
FT ASGRVALFFDKDSTDPGPDDRSALANYRHLSEISPWAIARLTAPTDNVKRFMADNTTAD
FT PKLINLGKVGWVTYASQFANLGDLFVEYTVDLYEAQPTAATLESLFRESTNGALTRVGL
FT PYFTLEVADGTSLVYQARVPGTYLVTVIFNNTTAGFAISISGGGIINSSFGVSSAGRTS
FT VTANVTITRNANLSITSLIGATNAQIFVAKANKDNAVAVV"
FT CDS 1192. .1761
FT /codon_start=1
FT /db_xref="GOA:Q67BT0"
FT /db_xref="InterPro:IPR005332"
FT /db_xref="UniProt/TrEMBL:Q67BT0"
FT /product="movement protein"
FT /protein_id="AAR26610.1"
FT /translation="MDTEYGQVNKPWKELYKEATLGNKLTVNVGMEDVEVPLLPSNFLT
FT KVRVSMSGGYITVRRVRIKIIPLVSRKAGVSGKLYLRDISDTTGRKLHCTELLDLGKEV
FT RLTMQHLDFSVLARSDVPIVFGFEDLVSPYLEGRELYSVSLRWQFGLSAQCYSLPPAKW
FT KVMYQEDALKALKPSKRKASKTDSSV"
FT CDS 1224. .1742
FT /codon_start=1
FT /db_xref="GOA:Q67BS9"
FT /db_xref="InterPro:IPR004905"
FT /db_xref="UniProt/Swiss-Prot:Q67BS9"
FT /product="unknown"
FT /protein_id="AAR28057.1"
FT /translation="MEGAIQGSDAREQANSERWDGGCGGTITPFKLPDESPGLHEWRLH
FT NSEESEDKDHPLGFKESWGFGKVVFKRYLRYDGTEASLHRALGSWERGSVNDAASRFLG
FT LGQVGCTYSIRFRGSCLTLSGGSRTLQRLIEMAIRTKRTMLQLTPSEVEGNVSRGRPEG
FT AKAFEKESE"
XX
SQ Sequence 2088 BP; 571 A; 444 C; 558 G; 515 T; 0 other;
AY370535 Length: 2088 April 19, 2005 08:49 Type: N Check: 7428 ..
1 aagtatacac aagcacacat gtctatcgta acaagaaata gcgatagagc
51 tctggcgaga ctggccgcgc ctgccgctat ggcaggtgcg cgcatgattg
101 ttgagaataa agaggtgtta tggaatggag ccaaatggat ttgggcaaat
151 ttgcccaagc ggaagaaagg taataagagt aatggtggat tgatatcaca
201 cccgcagacg ctccctggag ctatagctgc accaatctct tatgcctacc
251 cagtcagggg acgcaagcct aaatttcaag cgtctaaggg gtcggtaagg
301 atcacccatc gtgagtacat tagtgtgatc gagggtaata ccgatggtaa
351 tttcgtcgtt aacaatgggt caggggcaag taatgatttt agcatcaacc
401 cgctcaaccc ctttgttttc ccgtggttag ttagcattgc atccaacttt
451 gatcagtaca catttcgcag tttaaaattc gagtatattc ctctagcgaa
501 cacaggagcg tctggtagag tggcattatt ctttgataaa gatagcacag
551 accctgggcc cgatgatcgg tcggccctgg cgaactatcg gcatcttagt
601 gaaatctccc cttgggcgat tgccaggctc acagcaccaa ccgataatgt
651 taagaggttt atggccgata atacaactgc tgatccgaaa ttgataaatc
701 tcggaaaagt tggatgggtg acgtatgcgt cccaattcgc taacctgggt
751 gacttattcg tcgagtacac cgtagacctt tatgaagcgc agcctacagc
801 agctacactg gagtctctct ttagggagag tacaaatggg gcgctgacgc
851 gtgttgggtt accctacttc actcttgagg tagcggatgg cacatcacta
901 gtttaccagg cacgtgtccc tgggacttac ctcgttactg tgatcttcaa
951 taataccact gctgggtttg cgattagcat ctctggcgga ggaattataa
1001 atagctcatt tggggttagt tccgcgggta gaacgtccgt tacagcaaac
1051 gtaaccataa caagaaatgc taatctcagc ataaccagtc tgattggagc
1101 aactaatgcc caaatattcg tcgccaaggc gaacaaggat aatgcggtgg
1151 cagttgtgtg attgaagggg cttcttgaat acgaccaatt catggatact
1201 gaatacggac aagtcaataa accatggaag gagctataca aggaagcgac
1251 gctagggaac aagctaacag tgaacgttgg gatggaggat gtggaggtac
1301 cattactccc ttcaaacttc ctgacgaaag tccgggtctc catgagtgga
1351 ggctacataa cagtgaggag agtgaggata aagatcatcc ccttggtttc
1401 aaggaaagct ggggtttcgg gaaagttgta tttaagagat atctcagata
1451 cgacgggacg gaagcttcat tgcacagagc tcttggatct tgggaaagag
1501 gttcggttaa cgatgcagca tctagatttc tcggtcttgg ccaggtcgga
1551 tgtacctata gtattcggtt tcgaggatct tgtctcacct tatctggagg
1601 gtcgcgaact ctacagcgtc tcattgagat ggcaattcgg actaagcgca
1651 caatgttaca gcttaccccc agcgaagtgg aaggtaatgt atcaagagga
1701 cgccctgaag gcgctaaagc cttcgaaaag gaaagcgagt aagacagact
1751 cttcagtctg atactgccga agcgagtgaa tactgtttga gcatgcaggt
1801 tactcttcgt attgttcggt ctacataatg acgagtcagg tcaggctccg
1851 cactaggttc ggtcacctag gggatggaga catggaaggg atctcgtgcg
1901 ctataagtct aacgaaagtt gagcttgcga catgggtcta tgcctggata
1951 agttgtgtag gttgccgcat acgatgaatt ggatgcctgt ttacgactaa
2001 tagggaacac tagtggaaac agtaaaggac acggttcatc tcacccttcg
2051 ggggggctat agagatcgct ggaagcacta ccggacaa