Sequence of DPV Guaroa virus
Guaroa virus strain BeH22063 polyprotein gene, complete cds.
ACC No: AY380581
Dated: 2006-11-14 | Length: 4452 | CRC: -16544558
ID AY380581; SV 1; linear; genomic RNA; STD; VRL; 4452 BP.
XX
AC AY380581;
XX
DT 30-AUG-2004 (Rel. 81, Created)
DT 14-NOV-2006 (Rel. 89, Last updated, Version 3)
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DE Guaroa virus strain BeH22063 polyprotein gene, complete cds.
XX
KW .
XX
OS Guaroa virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Orthobunyavirus.
XX
RN [1]
RP 1-4452
RX DOI; 10.1099/vir.0.80122-0.
RX PUBMED; 15448370.
RA Briese T., Rambaut A., Lipkin W.I.;
RT "Analysis of the medium (M) segment sequence of Guaroa virus and its
RT comparison to other orthobunyaviruses";
RL J. Gen. Virol. 85(Pt 10):3071-3077(2004).
XX
RN [2]
RP 1-4452
RA Briese T., Lipkin W.I.;
RT ;
RL Submitted (03-SEP-2003) to the INSDC.
RL Greene Infectious Diseases Laboratory, 1801 Mailman School of Public
RL Health, Columbia University, 722 West, 168th Street, New York, NY 10032,
RL USA
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FH Key Location/Qualifiers
FH
FT source 1. .4452
FT /organism="Guaroa virus"
FT /segment="M; middle"
FT /strain="BeH22063"
FT /mol_type="genomic RNA"
FT /note="provided by Bob Tesh, University of Texas,
FT Galveston"
FT /db_xref="taxon:80941"
FT CDS 20. .4276
FT /codon_start=1
FT /product="polyprotein"
FT /note="G2; NSm; G1"
FT /db_xref="GOA:Q678K8"
FT /db_xref="InterPro:IPR002532"
FT /db_xref="InterPro:IPR005167"
FT /db_xref="InterPro:IPR005168"
FT /db_xref="InterPro:IPR014413"
FT /db_xref="UniProtKB/TrEMBL:Q678K8"
FT /protein_id="AAR28442.1"
FT /translation="MDISKHMQMLVVLYLISLSGTTPVVFNKCFTGGSLVFSKKSDTGM
FT SEICLKDDISMIKTSIDFKKENNTIVATNKVYKQWIVQDWKDCHPMKMVGGTINIIEVT
FT ADLMFKSVSYTCTTDCTIGIDRENALIIFQTNKLNHFEVSGTTIKTGWFKNKASVSLDQ
FT TCEHIKITCGRKSMQLHACFKDHMSCIRFLHRTILPGYMATSICQNIEVILLTVFTLII
FT FGVLCILIKTYICYLFLPLYMIPAYIYGCVYNKSCKICINCGLAYHPFTNCGSHCVCGA
FT KFETSDRMRIHRQSGFCPGYKSLRAARSMCKSKTCSLIFSIGGAILILSFVTPIAGEKL
FT YTLDELPEAYTTEINSIKIMQNYLELKLWITITALFIIALIMMISNFIVVNICKLFYFH
FT CYECNMYHTKRNIRYNGDFCNKCGFCMCGVLEDVEGLKIHKTTESCKIKMHYRSTNFAL
FT ILFGLLLILISVSASLASCDAEEPNINCIGYKINLTCNKPLTNEEAVNYLVENNIIEDV
FT EREKALELTTDLANMKKQLNFQTNFKTCLVLEHVFLLNQCGYYKDLESNNEIKQIPWRT
FT IAKTEAFDICSIRKHQHFCRCMATGEKCNSANWDFAKEMNDIYNFKPTFYRRDVNLFLR
FT IFSEAFPGSTYRYLYSILKNKDIEKIKELLTDIEKRFPYNQLLVGFIKFGHILLIDNLA
FT YSLPPDVSRMGAESRSKVETSGYQVGQPILSCNNPLIIRCMSPKLDVVIPALLKCHRNN
FT KDSLYYIDHKVYTSFQHPQSWCFADKHCLIHFRPVPGSELNAVKKRNCFSSQVTEDQDQ
FT YNTKQAFCRAIKFGICTNILNQQSRSIECDNNLIYNTDSKLTNELTGDVNEICLNTGCK
FT DGRYPLNPINSVNCTWEENVLKSKHAQLIAVENIEELKRLTQDRLTHTLDIYRFKKTIN
FT FPKIIPSKKYISLQGIDSSDGIDSSYIEVDITARTNEALGIQVRAPDNQPIMDLIIHIT
FT LASTKADYLRIYETGPTVGINVNHDEHCTGSCPEQIPHKQNWLTFSKERTSQWGCEEFG
FT CLAINEGCLFGSCQDIIKSEARVFKKTTVEKHIVRLCIIHANEDKCTDLDPEEPLITES
FT LELQLDSITTKNLPELILIKDHKVYTGQINDLGAVSSGCGDVQVVNNTIFGGGTVKFDY
FT LCYGAHRKDVVVRKCYNNHYESCKLLAEQKELTFLDESSAVSLEHNNYIIGSLKLKIVL
FT GDIRYKLFRKDIQLEVEGECIGCKNCLSGIDCNFKVTSPSETSCKIESPCSMFIENLII
FT KAGHTDTNFKIHCKTIDSKVIEFKICNNIYKVHITETKGNDKIELNTGDQTSYVQQHDN
FT RCGTWLCRLKEEGIGLLLEPLKAIFGTYITWFWVILGIIVFLFIGVYIFLPMIFKVRDI
FT LKKNEEEYKKDIRYRE"
FT variation 1872
FT /replace="c"
FT /note="substitution creates a potential glycosylation site"
XX
SQ Sequence 4452 BP; 1624 A; 672 C; 848 G; 1308 T; 0 other;
ay380581 Length: 4452 14-NOV-2006 Type: N Check: 9081 ..
1 aaatatagtg tcttgcagga tggatatttc aaagcacatg caaatgttgg
51 tagtgctcta cttgataagc ttgtctggaa ctactccggt ggtgtttaac
101 aagtgtttca ccggtgggtc tctggttttc tcaaaaaagt cagacacagg
151 aatgtctgaa atttgtctta aagatgatat ctccatgatc aaaacatcta
201 ttgattttaa aaaggaaaat aatacgatag tggccaccaa taaagtttat
251 aaacaatgga ttgtccaaga ctggaaggac tgtcatccta tgaaaatggt
301 tggaggaact attaatataa tagaagtaac agcagatcta atgtttaaaa
351 gtgtaagtta cacatgcaca acagattgca ctattggcat agaccgtgaa
401 aatgcactga ttatattcca aacaaacaaa ttgaaccact ttgaagtttc
451 tggtacaaca attaagaccg gttggtttaa aaataaggct tcagtttcct
501 tagatcaaac atgtgaacat ataaagataa cttgtggaag gaaatcaatg
551 caattacatg catgtttcaa agaccatatg tcatgcatta gatttttgca
601 cagaacaatt ctaccgggat atatggcaac atctatttgt cagaatatag
651 aagtgatcct cttgaccgta tttacgctta taatctttgg agtactttgt
701 atactgatta aaacatatat atgttaccta tttcttcctc tgtacatgat
751 tccagcttac atttacgggt gtgtgtataa taaaagctgt aagatatgca
801 ttaattgtgg cttagcttat cacccattca ccaattgtgg gtctcactgt
851 gtatgcgggg ccaaatttga aacatctgat agaatgagga tacacaggca
901 gtctggattc tgccctgggt acaaaagcct aagagcagcc aggtctatgt
951 gtaaaagcaa gacttgctcc ctcattttct caataggagg agctatcttg
1001 atattatcat ttgttacacc aattgctgga gaaaagctat atacattgga
1051 tgagctccca gaggcataca ctacagaaat taattcaatt aaaatcatgc
1101 agaactattt ggagttaaaa ttgtggataa caataactgc attattcatt
1151 attgctttaa taatgatgat ttctaatttt attgttgtca atatatgtaa
1201 attgttttac tttcattgtt atgaatgcaa catgtatcat acaaagagaa
1251 atattaggta taatggagat ttctgtaaca agtgtggttt ttgcatgtgt
1301 ggtgtattag aggatgtaga aggtttgaaa atacacaaga ccacagaaag
1351 ctgcaagata aaaatgcatt atagatctac caattttgct cttatcttat
1401 ttgggttact attaatactt atctcagtta gtgcatcctt agcaagttgt
1451 gatgcagaag aacctaacat aaattgcata ggttataaaa taaatttgac
1501 atgcaataaa ccccttacaa atgaagaagc tgtaaattac ttagttgaaa
1551 ataatataat tgaggatgta gagagggaaa aagcattaga attaacaact
1601 gatttagcta atatgaaaaa gcagttaaac ttccaaacaa attttaaaac
1651 ttgtttagta cttgaacatg tattcttgtt gaatcaatgt gggtactata
1701 aagacttaga aagtaataat gagatcaagc agataccctg gagaacaatt
1751 gcaaaaacag aagcttttga tatatgttct ataaggaaac atcagcattt
1801 ctgtagatgt atggcgacag gagaaaagtg caattctgct aattgggact
1851 ttgctaaaga aatgaatgac atatataatt ttaagccaac tttctataga
1901 agagatgtca acttattttt gaggattttt tcagaagcat tccccggaag
1951 cacttataga tacttataca gcatactaaa aaataaggac attgagaaga
2001 taaaggagct tctgactgat atagaaaaaa gatttcctta taatcaattg
2051 ttagttggtt ttattaaatt tggtcatatc ctcctaatag ataatttggc
2101 ttactcactc cctccagacg tttcacggat gggtgcagaa tctagaagta
2151 aagtggaaac atctggttat caagtaggac agccgatact ctcatgtaat
2201 aatcctttaa taatacgatg catgagccca aagctggatg ttgtcatccc
2251 tgcattatta aaatgccata gaaataataa ggattcattg tattatatag
2301 accataaagt atatacatct tttcaacacc cgcaatcatg gtgttttgct
2351 gacaaacatt gtctaataca ctttagacca gtaccaggat cagagttgaa
2401 tgcagttaaa aagagaaatt gtttcagtag tcaagtgaca gaggaccagg
2451 atcagtataa tactaaacaa gccttttgca gagcaattaa gttcggaata
2501 tgtacaaaca tattaaatca acagtcaaga agcattgaat gtgacaacaa
2551 tttgatttac aacacagaca gtaagctcac aaatgaatta acaggtgatg
2601 tcaatgaaat ttgcctgaat actggctgca aagatggacg ttacccatta
2651 aatccaataa attctgtaaa ctgtacttgg gaagagaatg tgttaaaatc
2701 aaagcatgcg cagttgatag ctgtggaaaa catagaagaa ttgaagcgtt
2751 tgacacaaga taggttaaca cacacactcg acatatatag attcaagaag
2801 acaatcaact tcccaaaaat aataccctct aagaaataca ttagtttaca
2851 agggatagat tcgagcgatg ggattgatag ttcttatata gaggttgata
2901 taacagcaag gacaaatgag gcacttggga tacaggtccg tgctcctgat
2951 aatcagccaa tcatggatct aattatacat ataactctag cttcaacaaa
3001 ggcagattat cttagaatct atgagacagg cccaacagta ggaattaatg
3051 tcaaccatga tgaacattgt actgggtcct gtcctgaaca aatacctcat
3101 aaacaaaatt ggctgacctt ctcaaaagaa cgaacaagcc aatggggatg
3151 tgaagagttt ggatgcttag caataaacga aggatgtctt tttggttcgt
3201 gtcaagacat tattaaaagt gaggctagag tttttaaaaa aacaacagta
3251 gagaagcaca tagttcggct ttgtattatc catgcaaacg aagataagtg
3301 tactgattta gacccagagg aaccgttaat aacagaaagc ttagaattgc
3351 aattggatag tatcacaaca aagaacctac cagaattaat tctaattaaa
3401 gatcacaagg tttatactgg gcaaattaat gatctgggag cggtatcatc
3451 aggatgcggt gatgtccagg tggtgaacaa cactatattt ggtggtggta
3501 ctgttaaatt tgactatctg tgttatgggg ctcacaggaa ggatgttgtc
3551 gtccgtaaat gttataataa ccattatgaa tcgtgtaaat tattagctga
3601 acagaaagaa ttaacattct tagacgagtc atcagctgtg agtttagagc
3651 ataataacta tataatcgga tctttaaaat taaaaattgt gctaggcgat
3701 ataagataca aattattcag aaaagacatt cagttagagg ttgaagggga
3751 gtgcattgga tgtaaaaatt gtttaagcgg catagattgc aattttaaag
3801 taacatctcc tagtgaaaca tcatgtaaaa tcgagagtcc ctgttcaatg
3851 tttatagaga atttgattat caaagcaggc cacacagaca caaactttaa
3901 aattcattgc aaaacaattg acagcaaggt aattgaattc aagatatgca
3951 ataatattta caaagtgcat attacggaga ctaagggtaa tgataaaatt
4001 gaattaaaca caggagatca aacatcttat gtacagcagc atgataatag
4051 atgtggaacc tggctgtgca gacttaaaga agaaggaata ggcctgttgc
4101 ttgagccatt aaaggcaata tttgggactt atattacatg gttttgggtt
4151 attctaggga ttattgtgtt cttatttata ggggtatata tatttttgcc
4201 tatgattttc aaggtaagag atatattgaa aaagaatgaa gaggaataca
4251 aaaaggacat cagatataga gaataattac atgaggtagc caatagagta
4301 aggtaagtac aaataaatta tcaaacagat gataaacaaa atcaagcaaa
4351 aataccaaaa gaagaaaata acaaaaaaac acacacaaca actcctgcta
4401 tacattagtg gcaggaaaag aatacagcat ttatctccac tatttttatg
4451 tt