Sequence of DPV Chalara elegans RNA virus 1
Thielaviopsis basicola dsRNA virus 1, complete sequence.
ACC No: AY561500
Dated: 2005-03-24 | Length: 5310 | CRC: 1432571836
!!NA_SEQUENCE 1.0
ID AY561500 standard; genomic RNA; VRL; 5310 BP.
XX
AC AY561500;
XX
SV AY561500.1
XX
DT 23-MAR-2004 (Rel. 79, Created)
DT 24-MAR-2005 (Rel. 83, Last updated, Version 2)
XX
DE Thielaviopsis basicola dsRNA virus 1, complete sequence.
XX
KW .
XX
OS Thielaviopsis basicola dsRNA virus 1
OC Viruses; dsRNA viruses.
XX
RN [1]
RP 1-5310
RA Park y., James D., Punja Z.K.;
RT "Co-infection by two distinct totivirus-like double-stranded RNA elements
RT in Chalara elegans (Thielaviopsis basicola)";
RL Virus Res. 109(1):71-85(2005).
XX
RN [2]
RP 1-5310
RA Park Y., James D., Punja Z.K.;
RT ;
RL Submitted (27-FEB-2004) to the EMBL/GenBank/DDBJ databases.
RL Biology, Simon Fraser University, 8888 University Drive, Burnaby, BC V5A
RL 1S6, Canada
XX
FH Key Location/Qualifiers
FH
FT source 1. .5310
FT /db_xref="taxon:267285"
FT /mol_type="genomic RNA"
FT /organism="Thielaviopsis basicola dsRNA virus 1"
FT /isolation_source="strain CKP"
FT /specific_host="Thielaviopsis basicola"
FT CDS 329. .2641
FT /codon_start=1
FT /db_xref="InterPro:IPR002345"
FT /db_xref="InterPro:IPR008871"
FT /db_xref="UniProt/TrEMBL:Q6Q425"
FT /product="coat protein"
FT /protein_id="AAS68035.1"
FT /translation="MEATSLNHFLSGVIAAPKGGRLAEDSAFRRYRAHVRTTATIGGNT
FT DARNAFIRYEVGRSSGKRGQLLAAPPDDSRRIEASYPTNAVLAEDFLGLAKKYSNFSAQ
FT FQFSSLAAVAERLAKGLAVHATVADVDSVALRGGAPLIVAGLGTYDGPINSLISSVFIP
FT RLVNNVLTGDVFSVLANAIAGEGASIATDIAEIDPSTRQPVIPEVDGDGFAKAATEALR
FT IVGANMAQSDQGLLFSLAVTRGIHSVVSWLPTAMKAALLGICCVWTFQCPFVGFITGSK
FT LHGPPSLLSTVSRSVLLCRCHCTDPAAAVAPSDPGENYNGEWFPTFYSGTKGGDPTVRP
FT GGDCPGNSETSGRIRSQLLADCEKFFRNYIPALGRIFGLTGSPNLAVTVAVGMSRFLHA
FT DPRHLRYASVAPWYWIEPTSLLPSDFLGSVAEMNGSGSFGGKDSTKTKLAWEDIELAGD
FT RDTTFSAYRAKFLSPRRAWFMAHWNGHPDNGLGCIRLRQADPNGFIHPGRGTSGADLRD
FT RLEDDAPISDYLWDRGQSPFCAPGELLNLGSTIGFLVRHVTFDDDGIPTTEHVPTSREF
FT LDTTVTIEVGRPLSISIGKSNCPDSKARRARTRATIELGAASRRARAFGSAAVAEMPTL
FT STAPRALTFAPSRLMVKDTGGGAGSSRHGADSGGSGADDAARKADGVPVRATAHNQPVR
FT FPTLANPTGPTRSSAAPAAAARDQSAGGPSVDIVRSGGDAASEVGSDVAPAPAPGVESG
FT VVSSSVAAPTNEGRNDV"
FT CDS 2619. .4067
FT /codon_start=1
FT /product="truncated RNA-dependent RNA polymerase"
FT /protein_id="AAS68036.1"
FT /translation="MRAETMSRYEEFGHLGKYLSDLLTEFNECLPPLPGTDLMEHLSAL
FT TWAAPALMDRHVALPAAVSLLLLEFPLQMDYKPEFAVHLALHSFDFSFVGQPFDFNVFN
FT NDCRRCSQNAPASCKGNKDPAKGCEHRRTAAYRSKRKLGLQSKGYYSWLGHRAASDSIF
FT RDTLFPKKNFGAASVKVNVHLGPLLRAVMFELGSARLGELLSLLEAGMYADVVCSYILY
FT ALTLEHHIGSRGVHIAAAMVRQPANAKGLSNACKALGLNATFPGAMLVEGISLQGRGCK
FT PVDLADELYKRTDPVGVQEQVLPLSDDLRRAIDATIEHELPVGELPDMEEWWSSRWLWC
FT VNGSQNRSSDAALGLDHVPSDLLGSQRYRRMAAEEVSLNPIYAWDGYTEVSFSEKLECG
FT KNRAIFACDTRSYFGFSYLLGEVQKRWRNSRVLLDPGKSGYLGLARRLLRGSVRGGVNL
FT MLDYDDFNSHHSIETMKYVFLKTA"
FT misc_feature 4071. .5246
FT /note="putative RNA-dependent RNA polymerase open reading
FT frame"
XX
SQ Sequence 5310 BP; 1076 A; 1328 C; 1465 G; 1441 T; 0 other;
AY561500 Length: 5310 March 29, 2005 13:36 Type: N Check: 399 ..
1 cgaaaaacaa gcgatgaaca gaacgtgccc cagctcttac cgtccctgtt
51 tttctgggtt gcgcacctcc atccgggtgc gtgcttccgt agacatctaa
101 ttttaaccga attaggcaag tccggtccac gtggaagtgg gaaatgttat
151 gctactctgt gtcttccaaa cactaggttg tccgcggctc cgaaagaagc
201 tactcgggac cgaaaaggcg ttagcagtat gtggtaggag ggaggcggga
251 gaccgctccg ttgatcatca cattctgttc tcgacggcat aactttacac
301 ttttaaaaca ctttaaaccg ctgcttccat ggaggctact tctcttaacc
351 attttttgtc tggtgtcatc gccgccccta aaggtggacg tttggccgaa
401 gactctgctt tccgcaggta ccgtgcccac gtccgcacca ccgccactat
451 tggcggtaac acggacgccc gtaacgcgtt catccgctac gaggttggac
501 gctctagcgg taaacgcggc cagctacttg ctgccccccc ggacgactct
551 cgtcgtattg aggcgtccta cccgaccaat gccgtgctgg ccgaggactt
601 tctgggactc gcaaagaagt attcgaactt ctctgcccag ttccagtttt
651 cgtctctggc cgcagtcgct gagcgtctag ctaaaggcct cgctgtccat
701 gcaaccgttg ccgacgtgga ttctgttgcg ctgcgtggtg gtgcccccct
751 gattgtggca ggtcttggca cttacgacgg accgatcaat agcttgatca
801 gttcggtttt tatccccaga ctggtcaaca acgtgttgac tggtgatgtc
851 ttttccgtgc tagccaacgc gattgccggg gaaggtgcct ccattgcaac
901 cgacattgcc gagatcgacc cctccacccg ccagcctgtc atacctgagg
951 ttgatggaga cggtttcgct aaggcggcta ctgaggcact ccgcatcgtt
1001 ggagctaaca tggctcagag tgaccaaggt ttgctgttct cgctcgctgt
1051 aacccgtggc atccactcgg ttgtgtcgtg gttgcccaca gcgatgaagg
1101 cggcattact agggatctgt tgcgtgtgga cgtttcagtg tccatttgtg
1151 ggattcatta ctggctcgaa gttacacggg cctccgagtc tcttgtccac
1201 agtatcccgc agtgtgctgc tttgtagatg ccattgcacc gaccccgctg
1251 ccgcagttgc tccttctgac ccgggtgaaa actacaacgg tgaatggttc
1301 cccaccttct actctggtac gaagggcggt gatcctactg tgcgtccggg
1351 tggggattgt cctgggaact ccgagacttc tggccggatt cgctctcagc
1401 tacttgctga ttgcgagaag ttctttagga actatattcc agccctcggt
1451 cgtatctttg gactgactgg ttcgcccaac ctggcagtca ctgtcgctgt
1501 tggaatgagt cggtttcttc acgccgatcc gagacacctc cgctacgctt
1551 ccgtagctcc ttggtactgg atagagccaa cttctttgct gccgtctgat
1601 tttcttggat ctgtggccga gatgaatggc tctggtagtt ttggtggtaa
1651 ggatagtacc aagacgaagt tagcctggga ggatatagag ttggcgggtg
1701 accgtgacac tactttctcc gcctacaggg ccaagtttct gtcgccgcgc
1751 cgtgcttggt tcatggctca ttggaatggc caccccgaca acggccttgg
1801 ttgcatccgc ctccgtcaag ctgatcctaa cggatttatt catccggggc
1851 gtggcacgag tggcgctgat ttgcgcgacc gcttggagga tgacgctcct
1901 atctccgact atctgtggga tcgtggtcag agtccgtttt gcgctcctgg
1951 tgagctgcta aatctcggct cgactattgg tttcctcgtc cgtcatgtaa
2001 cttttgatga tgatgggatt cccactactg agcatgtccc aacgtcccgc
2051 gagttcctgg acactactgt tacgattgag gttggcagac ctttgtccat
2101 ttcaatcggc aagagtaact gtccagactc aaaggccagg cgcgctagaa
2151 ctcgcgccac gatcgagttg ggcgctgcgt cgcgccgtgc tagggctttt
2201 ggttcggccg ctgttgccga gatgcctacg ctgtctacgg cacctcgcgc
2251 attgactttt gctccgtcgc gtctgatggt caaagacact ggcggcggtg
2301 ctggtagctc cagacatggc gctgattctg gcggcagtgg ggccgatgat
2351 gctgctagga aagcagatgg agtgccggtt cgggcaacag cgcacaacca
2401 acctgtacgc ttcccgacac tcgccaaccc cactggccct acgcgttcct
2451 cggctgcgcc tgctgctgcc gcccgcgacc agtcggctgg tggtccgtct
2501 gtcgatattg tgcgcagtgg tggtgatgcc gcgtctgaag tcggcagtga
2551 tgtcgccccg gcgcccgccc ctggtgtaga gtctggtgta gtatcttctt
2601 ctgtggctgc ccccactaat gagggccgaa acgatgtcta gatacgagga
2651 attcggccat cttggcaagt acttgagcga cttgctgact gaattcaatg
2701 aatgcttgcc ccccctacct ggtactgact taatggaaca cctctctgcc
2751 ctgacttggg ctgcgcctgc tctaatggat agacatgtgg ctttgcccgc
2801 cgccgtgtca ctacttctgt tagagttccc attgcagatg gactacaaac
2851 ctgaatttgc tgtccacctt gctttacact cttttgattt ttctttcgtt
2901 gggcaacctt ttgattttaa tgtttttaat aatgattgtc ggcgttgctc
2951 gcaaaatgca ccagcgtctt gcaaaggcaa caaggatcct gctaagggat
3001 gtgagcatag acggactgcg gcctatcgta gtaagaggaa actaggcctc
3051 caaagcaagg gttactactc ttggctgggg caccgtgctg cgtctgactc
3101 gatttttagg gataccctgt tccccaagaa aaacttcggc gccgccagtg
3151 taaaggttaa cgtacacctg ggccccttac tccgcgcggt tatgtttgaa
3201 ctaggttccg cccgtttagg tgaattattg tctttgttag aagccgggat
3251 gtatgcagac gttgtatgtt cttacatact atacgcactg acgttagagc
3301 accacatcgg tagtcgtgga gttcatatag ccgccgctat ggtcagacaa
3351 cctgccaatg caaagggttt aagtaacgcc tgtaaggctc tgggccttaa
3401 tgctactttt cctggcgcga tgttggtaga aggcatatcc ttacaaggac
3451 gtggctgtaa accagttgac ctggcagatg agctatacaa gcggactgat
3501 ccagtgggtg ttcaggagca agtgctcccg ttgagtgatg atttgcggcg
3551 agcgattgat gcgacgatag agcatgaact gcctgtgggc gagttgcctg
3601 atatggagga gtggtggtca tcgaggtggt tgtggtgtgt taatggtagc
3651 cagaacaggt ccagtgatgc tgcattagga cttgatcacg tccccagtga
3701 tttgcttggt tctcagagat accggcgaat ggctgctgaa gaggtcagtc
3751 ttaatcctat ttacgcctgg gatggataca ccgaggtttc gttcagtgag
3801 aaactcgagt gtgggaagaa tcgtgctatt tttgcttgtg atacgcgttc
3851 gtattttggt ttttcgtatt tgctagggga ggtacagaag agatggagaa
3901 actctcgagt tttgttggat ccagggaaaa gtggttacct cggtttggca
3951 aggcgtctgt tgcgcggttc ggtacgtggg ggtgttaact taatgttgga
4001 ctatgatgat ttcaactctc atcactctat agagacgatg aagtatgttt
4051 ttctgaagac ggcctaacgt atgaatgccc cttcctggta tacggagaaa
4101 attgttagtt cttttgacaa gatgtggatc gtcagaggta gtgaaaggtt
4151 acacgtcctc ggcactttga tgagtgggca tcgcggtact acacacatta
4201 attcagtact gaatgctgct tacataagga tggccttggg taacgcgtat
4251 tacgacaaaa tactatcact ccacacaggt gatgacgttt acatgcgcct
4301 tgacacttta ggtgactgtg tccgtgtgtt gcgtgcttgt catggcgctg
4351 gctgcaggat gaatccatct aagcaatcaa tcggttatca ccgggctgag
4401 tttttaagaa tgggtgtcaa ctctcagtat gctgtgggat acttgtgccg
4451 tgcgctgccg tcactcgttt gtggtaattg ggttggagcg gggagtgacg
4501 atcagctgga actggcgagg tcactggttg gttctgtgcg gggtgtgatt
4551 aaccgtggta ttccacgtat atgtgttcgt ttgcttgcac gctctttaag
4601 cgctttccat cgctttaaac tgggactcgc gatcgacctc ttggagggat
4651 ctgtatccat agagggatca ccatgttggg cgcgtgataa taagatccgt
4701 aatgtctgtc cgagacttat agaaccacct gataaaatag gtatcggaat
4751 agattggggt aggtacgcta cgcgtgactt cttgaccaac cacctctcac
4801 ccgtagaggt tatggcgatc aaggcgtctg gagttaaccc tgagttgatc
4851 atgttgcagt ctagttattc taaaggcgtg caacggagag ctcatgacaa
4901 aaacgtcagt ttgggaacac tactggatac taagaacgtc aaaactaggg
4951 ttgttcacgg ggttgcgctt gctggagact tggtgtctag acaaactgaa
5001 aagggcgtct tttcaatgca ccctgttctc cacctgctta aaaatgcctt
5051 gagtgacagc gacttacgct cgctcctggc ttctgtggga atcgatgctg
5101 gtcgtcgtga cccccgagtc gtctgcttcg gtccggatag caaatctgtc
5151 aatattgttg gtactttgcc ttactcggat gctgcttcgc tcgctaagag
5201 gacaaacagt gatactatag gagtgtcgct gccagtgtat ctttagatac
5251 tgcctctaaa ataccaccct taattgggtg cgacttattg gtcccctcgg
5301 ggacccatgc