Sequence of DPV Gremmeniella mitovirus S2

Gremmeniella abietina mitochondrial RNA virus S2, complete genome.

ACC No: AY615209

Dated: 2005-04-28 | Length: 2587 | CRC: 1026874097

                !!NA_SEQUENCE 1.0
ID   AY615209   standard; genomic RNA; VRL; 2587 BP.
XX
AC   AY615209;
XX
SV   AY615209.1
XX
DT   28-JUN-2004 (Rel. 80, Created)
DT   28-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE   Gremmeniella abietina mitochondrial RNA virus S2, complete genome.
XX
KW   .
XX
OS   Gremmeniella abietina mitochondrial RNA virus S2
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Narnaviridae;
OC   Mitovirus.
XX
RN   [1]
RP   1-2587
RX   PUBMED; 15845253.
RA   Tuomivirta T.T., Hantula J.;
RT   "Three unrelated viruses occur in a single isolate of Gremmeniella abietina
RT   var. abietina type A";
RL   Virus Res. 110(1-2):31-39(2005).
XX
RN   [2]
RP   1-2587
RA   Tuomivirta T.T., Hantula J.;
RT   ;
RL   Submitted (30-APR-2004) to the EMBL/GenBank/DDBJ databases.
RL   Forest Pathology, Finnish Forest Reseach Institute, Vantaa Research Center,
RL   Jokiniemenkuja 1, P.O.B. 18, Vantaa FIN-010301, Finland
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2587
FT                   /db_xref="taxon:279538"
FT                   /mol_type="genomic RNA"
FT                   /virion
FT                   /organism="Gremmeniella abietina mitochondrial RNA virus
FT                   S2"
FT                   /isolate="SurS4"
FT                   /specific_host="Gremmeniella abietina type A"
FT   CDS             269. .2494
FT                   /codon_start=1
FT                   /db_xref="GOA:Q6GYC2"
FT                   /db_xref="InterPro:IPR008686"
FT                   /db_xref="UniProt/TrEMBL:Q6GYC2"
FT                   /transl_table=4
FT                   /product="putative RNA-dependent RNA polymerase"
FT                   /protein_id="AAT48883.1"
FT                   /translation="MNKNLFQIVIKLFVMIFLNTDVKLFVSLYFRCLTKHLKHHGVVST
FT                   VKIFKQIRLHVTRYLCGSPLRTNSMMIGIDKDGWPKMINFLKPLANGTRSDKQLLLSIL
FT                   FITRSFVEKDKSKLVPDWSTITQPRTTQKEYIIPSGFIKDWVLNNHLGTYKSEFDDSNH
FT                   FVSVKSSPTGPSTLTALWGLWNHSYESFNWLFKITSLSGVDYLTKIMNWTWLKDLGNKN
FT                   NNKWSKQFLGSLSLIYDPECKVRIVAMLDYTTQLFLRPIHNDLFKLLKKLPQDRTFTQN
FT                   PLNDWENNEHSFWSIDLTAATDRFPISLQRRLLLYIYSDPEIANSWQNLLVHREYARNG
FT                   LNPIKYSVGQPMGAYSSWPAFTLSHHLVVHWCAHLCHINKFKDYIILGDDIVIHNDKVA
FT                   KKYIEIMGKLGVGLSDSKTHVSKDTYEFAKRWIHKGQEISPLPITGIVNNITNPYIVLM
FT                   NLYDFFKIKRNQYNFSGDILTMLLKLYQGLKIYKGDKSKKHYYLSLNRFKNLDIFLFAL
FT                   NNTFGYSTYDHKRSFLISKEYSKDLPGPKIMQDLIXYVISTGLSNLTVESVNKSLKFVD
FT                   TIIDNKSLLNIEDPNDLSNLPLFKGFQAYISNLRKTVEGWNNKSISLIEASRGLVQMDI
FT                   LPIMKGSNRKILELQTIGKIYQNGIQEINNTDFEIFGSSQMIHPNESLGIQEGSSLNSF
FT                   SSLSSSIDTNLVFIQNELNVIAKKNWMPPATEDSVADSYAAFAAMFN"
XX
SQ   Sequence 2587 BP; 947 A; 400 C; 402 G; 837 T; 1 other;

  AY615209  Length: 2587  May 3, 2005 08:56  Type: N  Check: 3644  ..

       1  tggatatatg aagaattcga ccttcccacg cgtacgtgta aacagggcta
      51  atcacccggc caagtataat tttcttggtc ccagttagca atactatgag
     101  agtattctag atttcttcga gtgtcccttt tggttaattt ctgaaggctg
     151  gaaactccaa ccgttggaaa taccctgcaa aagagctaag ttatagcatc
     201  gtagataact ataatcgctc ttgggccgca agtcggctat gcggtacaac
     251  cgttaagact taattattat gaacaaaaat ttatttcaaa tagtaattaa
     301  actattcgta atgatatttt tgaacacaga tgttaagctc ttcgtatctc
     351  tttattttag atgtttaact aaacatttaa aacaccacgg ggtagtgagt
     401  acagtaaaaa tatttaaaca aataagatta catgttactc gttacctttg
     451  tggatcacca ttgagaacaa actcaatgat gatagggata gataaagatg
     501  gttgaccaaa aatgatcaat ttccttaaac cacttgctaa tggtacaaga
     551  tcagataaac aattactttt atcaatcttg ttcattacaa gaagttttgt
     601  ggaaaaagac aagagtaaac tagttcctga ctgaagtaca ataactcaac
     651  cccgaacaac acaaaaggaa tatattattc cttctggatt tattaaggat
     701  tgagtgttga acaatcattt aggaacttat aaaagtgagt ttgatgattc
     751  aaatcatttt gtatcagtta agagtagtcc aactggacca tctacactga
     801  ctgcactatg aggactatga aatcatagtt atgaatcatt taattgactt
     851  tttaagatta ctagtttatc tggtgttgat tatcttacaa aaatcatgaa
     901  ctggacttga ttaaaagacc taggaaataa aaataataat aaatgatcta
     951  aacaattttt aggatcttta tcattaattt atgacccaga atgtaaagtt
    1001  aggattgtag ctatgttaga ttatacaaca cagctatttc tccgacctat
    1051  acataatgac ttgtttaaac ttcttaagaa gttaccacaa gataggactt
    1101  ttacccaaaa tccattaaat gattgagaaa ataatgaaca ctcattttga
    1151  tcaatcgacc ttaccgctgc aactgataga tttccaatta gtttacaacg
    1201  tcggttatta ctatatatat atagtgatcc cgaaattgca aattcttgac
    1251  aaaatctatt agtacataga gaatacgctc gtaatgggtt gaatccaatt
    1301  aaatattcag ttggacaacc tatgggggcg tattcgtcct gacctgcttt
    1351  cacattatct catcatcttg tcgttcattg atgtgcacat ttgtgtcata
    1401  tcaataaatt caaagattat ataattcttg gtgacgatat cgttatacat
    1451  aatgataaag ttgctaaaaa atatatagaa ataatgggaa agttaggagt
    1501  gggtctatca gatagtaaaa ctcacgtatc gaaagataca tatgaatttg
    1551  ctaaaagatg aatccataaa ggacaagaaa tatcgccatt acctattaca
    1601  ggaattgtta ataatataac aaatccctat atagtattaa tgaatttata
    1651  cgatttcttt aaaatcaaaa gaaaccagta taacttctca ggtgatatac
    1701  taactatgtt attaaaatta taccaaggct taaaaatcta taagggagat
    1751  aaaagtaaaa aacattatta cttatctcta aatagattta aaaatcttga
    1801  tatattttta tttgcgctaa ataatacttt tggatattca acatatgatc
    1851  acaaaagatc atttttgatt tccaaagagt acagtaagga tttaccggga
    1901  ccaaaaataa tgcaagattt aatatyttac gtaattagta ctggtttatc
    1951  taatcttact gtggaaagtg tgaataaatc attgaagttt gtagatacca
    2001  taatagataa taaaagtcta ttaaatatcg aagaccctaa tgatttgtca
    2051  aaccttccat tatttaaagg ttttcaagca tatatctcta atcttcgaaa
    2101  gactgttgaa gggtgaaata ataaatcgat ttcacttatc gaagcctcaa
    2151  gaggattagt ccaaatggat atacttccaa ttatgaaagg ttctaatagg
    2201  aaaattttag aacttcaaac aattggtaaa atatatcaaa atggaataca
    2251  agaaataaat aatactgatt ttgaaatctt tggttcttcc caaatgatac
    2301  acccaaacga aagtttaggt attcaagaag gaagttcatt gaattcattc
    2351  tcatcattat catctagtat agatactaac ttggttttta tccagaatga
    2401  gttaaatgtt atagctaaga agaactgaat gcctcctgca actgaagatt
    2451  cagttgcgga ttcatatgca gcctttgcag ctatgttcaa ttaatatcat
    2501  taccgaatac agttgcaaat ctagatactc aaaaactata ttgagtctag
    2551  actccaactg gggttttaca cttatgtgta aaacacc