Sequence of DPV Gremmeniella abietina RNA virus L1
Gremmeniella abietina RNA virus L2, complete genome.
ACC No: AY615210
Dated: 2005-04-28 | Length: 5129 | CRC: -6841192
!!NA_SEQUENCE 1.0 ID AY615210 standard; genomic RNA; VRL; 5129 BP. XX AC AY615210; XX SV AY615210.1 XX DT 28-JUN-2004 (Rel. 80, Created) DT 28-APR-2005 (Rel. 83, Last updated, Version 2) XX DE Gremmeniella abietina RNA virus L2, complete genome. XX KW . XX OS Gremmeniella abietina RNA virus L2 OC Viruses; dsRNA viruses; Totiviridae; Totivirus. XX RN [1] RP 1-5129 RX PUBMED; 15845253. RA Tuomivirta T.T., Hantula J.; RT "Three unrelated viruses occur in a single isolate of Gremmeniella abietina RT var. abietina type A"; RL Virus Res. 110(1-2):31-39(2005). XX RN [2] RP 1-5129 RA Tuomivirta T.T., Hantula J.; RT ; RL Submitted (30-APR-2004) to the EMBL/GenBank/DDBJ databases. RL Forest Pathology, Finnish Forest Reseach Institute, Vantaa Research Center, RL Jokiniemenkuja 1, P.O.B. 18, Vantaa FIN-010301, Finland XX FH Key Location/Qualifiers FH FT source 1. .5129 FT /country="Finland" FT /db_xref="taxon:279539" FT /mol_type="genomic RNA" FT /virion FT /organism="Gremmeniella abietina RNA virus L2" FT /isolate="SurS4" FT /specific_host="Gremmeniella abietina type A" FT CDS 272. .2602 FT /codon_start=1 FT /db_xref="InterPro:IPR008871" FT /db_xref="UniProt/TrEMBL:Q6GYC1" FT /product="putative coat protein" FT /protein_id="AAT48884.1" FT /translation="MANAYETNFQTANASPLTGTLADPVGGTIQADQYRRYRAGVFMSV FT PDMGHVSNVGRSIFYEVGRHHGRARDLLAAPHAEAIPIDCSVDINAAEAANFEGMARRF FT SNFSPQWVKMDLAGMVERLAKGVTAAGVFGGIDTGTLRGGQAIRVTALGTLDSPQTASI FT NSVFIPRTVDTVGNDHVFAVLVSAANGEGAAVTTDVVRLDANTNQPMIPAVAGASFATA FT CVEALRILGANMEASGAGDIFAYAVTRGVHAGVSVVAHTDEGGWFRNVLRFDRFRVPYG FT GINQGLRQYPALPALASTSPSSIAAWVDAIALKTAAAVAHCDPLVPGEGGWYPSVFTAG FT QNGTSAPGSSEGAGVGDLEARSIGRQIASDIGRFAPTYCRALGTLFGLHTSSGIAESHL FT STVAMRALTQDVSTDRHLRHETVAPYFWIEPTSLIAVNAFGTPAEAEGYGSKVTPGDTR FT SEPCFERFRLLQKGTTANHMTVAFKMRTARTSALVSAYAAAPAPLADLKLYQFDESSIV FT LPGDQLPTQGDVASKHAAADPLSSYLWKRGQSCFPAPAEFINTNSNYGAKVRLVTWDDD FT FNASLSDLPNDEEMATGVVTFRVTVPTGLASAGSNAENREAKRARTRGAIALAQAVLRA FT RATGLAVSPSMEVSDVPPTFDTPPLLPAPIYGDTQSASGPRDPGPVPVLAVGGGLDVGR FT IARGAPLPPTAHHMPQRAPRIAGAVVPPGGPTAGPPAAAGGPVAPNVLPPPPAGPADSQ FT DPLPAPPAHLPTDATAAEAVPAQ" FT CDS 2599. .5076 FT /codon_start=1 FT /db_xref="GOA:Q6GYC0" FT /db_xref="InterPro:IPR003439" FT /db_xref="InterPro:IPR007095" FT /db_xref="InterPro:IPR008870" FT /db_xref="UniProt/TrEMBL:Q6GYC0" FT /product="putative RNA-dependent RNA polymerase" FT /protein_id="AAT48885.1" FT /translation="MIESPVSIRANEAGIVGQYLKGLLNMEWASGVMVLSFSQQISEVY FT KPTFNGLRPTDLQRAAAAYLVPDFPVQVRIERGSVLSLLSQVIDPPARVTDRHSFRWLC FT DPKASYAAFPPKQHPGAVNKVNVYLNEVASSLLSLDPAAYSSASQALWPYRGKIANDQA FT SAIILYGYGLRAQAVPDAMHVAATLATTPDLAKALTNFLKATGANGSRLGALLCESNVL FT LGRAAGPADLSEEARYRTSSDVESRLAIFSDADLSAAIDSVLDEEIKRVEGSQHIEFDS FT YQEHWNDRWAWAVNGAHSGHVSKLYPRVPKPPGMLREHRRAWLESVTEDPRIDWDGKTF FT VSASPKLEAGKTRAIFACDTVNYLAFEHLLAPVEKRWRNSKVILDPGRGGHLGMIFRTT FT AARARAGVSMMLDYDDFNSHHSTRAMQILFQRLGDRVGYPADKLAKLVASFEKMYIYNG FT MEQVGRVRGTLMSGHRGTTFINSVLNKAYLLIVLGEDLFERSXALHVGDDVYFGVRTYA FT EAGEVVTRIKNSPLRMNRMKQSVGHVSTEFLRNATSGRSTYGYFARAVASTVSGNWVNE FT MALSPSEALSSIIGAARTLVNRSGAENLPLLLHPSLVRMTGLPREDHKKLRELLLGTTA FT LDNGPQYSLGGYYTSVSSLITIAASDRHGYTPLPREATTAYLSCAADPLEVNVLTQAGV FT SVVSAMEEASFRKSLPARYTGYETLRLGPKSLIRSIGTASVADLISVSPPRGVLERYPL FT LTLAKRRLPEYLVRWAVSVAGGNPSAPDIGMEAWGEFKHGCMIATPMSYSDAATFGKRT FT VSTVLTCPLDAHV" XX SQ Sequence 5129 BP; 1054 A; 1531 C; 1369 G; 1174 T; 1 other; AY615210 Length: 5129 May 3, 2005 08:56 Type: N Check: 807 .. 1 tgataagacg ccagtcgata ccgaaaggtt cctgcttgcg tgcgttccct 51 actactggga gtgcgggatt ccgagtgtcc ctttatctac tactcgtgtt 101 gtgagatatg gcgaaagccc ctatctcgct gtgtgcccca tggtcccctg 151 gaccgcgcaa ccgtgacctg aaaagactct tggtagcatc gggctttgtt 201 atagtggccg ggcgagggtt ccgaagaccc ctaaaactac aacaattgca 251 cacttacaca acttctcaac tatggccaac gcctacgaga ccaatttcca 301 aaccgccaat gctagcccac ttactgggac cctagctgac ccggtcggcg 351 gtacgatcca agccgaccaa taccgtcgct atcgcgccgg tgttttcatg 401 tccgtcccgg acatgggcca tgtgagcaac gtgggacgca gcatcttcta 451 cgaagttggg cgtcaccacg gccgcgctcg cgacctctta gccgcgcccc 501 acgcggaagc tatccctatc gactgcagtg tcgatatcaa cgctgctgaa 551 gcagcaaact tcgaagggat ggctcgccgc ttctcgaatt ttagcccgca 601 atgggttaag atggacctgg ctgggatggt cgaacgcctc gccaaaggtg 651 tcactgctgc cggtgttttc ggtggtattg atacaggcac tctacggggt 701 ggacaggcca tccgggttac cgcactcggt accttggact cgcctcagac 751 ggcgtctatc aacagtgtct ttattcctcg cactgttgac accgtcggca 801 acgatcacgt ctttgctgtc cttgtatccg ctgctaacgg agaaggggct 851 gccgttacga ccgacgtggt tcggctggat gctaacacca accagcccat 901 gatcccagca gtggcaggtg cctcctttgc tactgcttgc gttgaagccc 951 tccgcatcct cggagccaat atggaggcat cgggcgcagg cgatattttc 1001 gcttacgctg taactcgtgg cgtccatgcg ggtgtatctg tggtcgccca 1051 taccgacgaa ggcggctggt tccgtaatgt tttgagattt gatcgtttcc 1101 gtgttccgta cggcggtatc aaccaggggt tgcgccagta tcctgctctc 1151 ccggctttgg cgtcgacctc accttcttcg atagcagcat gggtggacgc 1201 tatcgccttg aagaccgccg ctgctgtcgc tcattgcgac cctctcgttc 1251 ccggtgaagg cggatggtac ccttcagttt ttacagctgg gcagaacggg 1301 acctccgctc ccgggtcaag tgaaggtgcc ggggtcggtg acttggaggc 1351 ccgttccatc ggtaggcaga tcgcttctga catcgggcgc tttgcaccta 1401 cctactgccg cgcgctgggt acactcttcg ggctgcatac ttcgagtggt 1451 atcgcagaga gtcacctctc aaccgtcgct atgcgtgctc taacccagga 1501 cgtgagcact gaccgacatc tgcgacacga aactgtcgct ccctacttct 1551 ggattgagcc cacttcgctc attgcagtca atgcattcgg cactcccgcc 1601 gaagcagagg ggtacggttc aaaagtcacc cctggtgata cgcgaagtga 1651 accatgcttc gaacgcttca ggctgttgca gaaaggtact actgccaacc 1701 acatgacagt agcgttcaag atgcgtacgg cccggacttc ggccttggtt 1751 agcgcgtatg ctgcagcgcc tgctcccttg gcagacctca agctgtatca 1801 gtttgatgag tcttctatag tgctgcccgg cgatcagcta cctacccagg 1851 gtgacgtagc ttccaaacac gccgccgccg acccactctc ttcatattta 1901 tggaagaggg gtcagtcgtg cttccctgcg cccgcggagt tcatcaacac 1951 gaattccaat tacggcgcta aagttaggtt ggtcacatgg gacgatgatt 2001 tcaacgcttc cttgtctgac ctccccaacg atgaggagat ggcgactggc 2051 gttgtcacat tccgcgtgac ggtaccgacc ggcctcgcta gtgctggtag 2101 caacgctgaa aatcgcgaag ctaaacgtgc tcgtacccgc ggtgccatcg 2151 ctttagccca agcagtcttg cgagctaggg ctaccggtct ggctgtttcc 2201 ccctcgatgg aggttagcga tgtgccgcct acattcgaca cgcccccgct 2251 actcccggcc ccgatatacg gcgacaccca gtctgcgtcc ggaccgcgcg 2301 atcctggacc ggtaccagtg ctcgctgtcg gcggaggcct ggacgtcggc 2351 aggattgcgc gtggtgcacc tctgcctccg acggcacatc acatgccgca 2401 acgtgctcct aggattgctg gtgctgtcgt accgcccggt ggacctaccg 2451 ctggccctcc agctgccgct ggcggtcctg tagccccgaa cgtcctccca 2501 cctcctcccg ctggccccgc tgattcacag gatcccctcc ccgccccacc 2551 ggcacacttg ccaaccgatg ccactgctgc tgaagcagtg cccgctcaat 2601 gattgagtcc cctgtgtcta tacgagctaa tgaagccggc atcgtaggac 2651 aatacctgaa agggcttctc aacatggagt gggcgtctgg cgttatggtg 2701 ttatctttct ctcagcagat ttcggaggtc tacaaaccga cattcaacgg 2751 tttgagaccg acggatttac aaagggcagc tgctgcatat cttgttcccg 2801 attttcctgt acaagtccgt atcgaacgcg gatctgtact ctccttacta 2851 tctcaagtca tcgaccctcc ggctagagtg accgaccgcc attcgttccg 2901 gtggttgtgt gatcccaagg cgtcctatgc tgcatttcca cctaagcaac 2951 atccgggcgc tgtgaacaaa gtgaacgttt atctcaacga ggtggcatcc 3001 tccctccttt ctctggatcc agccgcctac tcttctgcta gccaagccct 3051 ctggccatac agagggaaga tagccaacga ccaagcaagc gcaattattc 3101 tgtacggcta cggtctacgc gcacaggctg tacccgacgc tatgcacgtg 3151 gctgctacgc ttgcgaccac tcccgatctg gcaaaggccc tcaccaactt 3201 cctcaaagca acgggcgcca acggttcgcg tttgggtgct ctcctatgcg 3251 aaagcaacgt ccttctgggt cgcgctgctg ggcccgccga tctctcagag 3301 gaggcccgat atcgtacgag cagcgatgtc gagagtcgtc tggctatctt 3351 cagtgacgct gacttgagtg cggctatcga cagtgtctta gatgaagaga 3401 tcaaacgagt cgagggctcg cagcacattg agttcgactc gtatcaagag 3451 cactggaacg accggtgggc ttgggcagtc aacggagccc actcaggcca 3501 cgtctcaaag ctatatcctc gcgtgccaaa gccaccagga atgctccgtg 3551 aacacagacg cgcttggctc gaaagtgtga ctgaggaccc acgtatcgat 3601 tgggacggta agacattcgt gtccgcatct ccgaaattag aagccgggaa 3651 gactcgagca atctttgcat gcgatactgt gaactacctc gctttcgagc 3701 atctgcttgc accggtagaa aaacgctggc ggaattccaa agtgattctg 3751 gatcctggac gtggcggtca tctcggcatg attttccgta cgacagctgc 3801 tcgtgcccgt gccggtgtct ccatgatgtt ggattatgat gatttcaatt 3851 ctcaccattc tacacgagcg atgcagatac tattccagcg tttaggagac 3901 cgcgttggtt acccagctga caaactggct aaacttgtcg cttcattcga 3951 gaaaatgtac atttacaatg gaatggagca agtcggtcgt gtgagaggta 4001 cactaatgag tggccatcga ggcacgacct tcatcaattc cgtcttgaac 4051 aaggcgtatc tccttatcgt actaggagaa gacttgtttg agcgcagcgk 4101 ggctttgcac gtgggtgacg atgtttactt cggtgtacgt acgtatgctg 4151 aagcaggcga agtcgttacc cggatcaaga attcgcctct gcgtatgaac 4201 cgaatgaagc aatcggtagg tcacgtatct actgagttct tacgcaacgc 4251 cacctcaggc cggtccacct acggatattt cgctcgtgct gtagccagca 4301 ccgtatccgg aaactgggtg aatgagatgg ccctcagtcc aagcgaggcg 4351 cttagctcta taatcggggc tgcgcgcacc ctcgttaacc gatccggcgc 4401 agaaaacttg ccactgctcc tccacccaag tcttgttcgc atgacgggtt 4451 taccaaggga ggaccacaag aagctgcgcg aattgctgtt ggggacaaca 4501 gctttggata acggccccca atacagcctg gggggctact acacatccgt 4551 cagcagccta atcactatcg ccgctagtga ccgtcacggc tacaccccgc 4601 tcccccgcga ggcaacaact gcttatttaa gctgtgccgc ggacccgctc 4651 gaagtgaacg tgttgaccca agctggtgtc agcgttgtca gcgcaatgga 4701 agaggcgagt ttcaggaagt cgcttccggc tcgctatact ggctacgaga 4751 cattacggct aggccctaag tcattgatca ggtctatagg tacagcatcc 4801 gttgctgacc tcatctccgt ttcccccccc cgcggagttc ttgaacgcta 4851 ccctctcctc accctggcga aaaggaggct cccagagtac ttagtacgct 4901 gggcagtctc tgtcgccggc ggcaaccctt ctgcccccga catcggcatg 4951 gaggcttggg gggaatttaa acacggctgc atgattgcga ctccgatgtc 5001 gtactccgat gcagctacct ttggcaagcg gacagtttca actgtattaa 5051 cttgcccact tgacgcccac gtgtaagcta ccccagctta cggtgtcaag 5101 aaattcgagg ccctaagggg ccaaattgc