Sequence of DPV Gremmeniella abietina RNA virus L1
Gremmeniella abietina RNA virus L2, complete genome.
ACC No: AY615210
Dated: 2005-04-28 | Length: 5129 | CRC: -6841192
!!NA_SEQUENCE 1.0
ID AY615210 standard; genomic RNA; VRL; 5129 BP.
XX
AC AY615210;
XX
SV AY615210.1
XX
DT 28-JUN-2004 (Rel. 80, Created)
DT 28-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE Gremmeniella abietina RNA virus L2, complete genome.
XX
KW .
XX
OS Gremmeniella abietina RNA virus L2
OC Viruses; dsRNA viruses; Totiviridae; Totivirus.
XX
RN [1]
RP 1-5129
RX PUBMED; 15845253.
RA Tuomivirta T.T., Hantula J.;
RT "Three unrelated viruses occur in a single isolate of Gremmeniella abietina
RT var. abietina type A";
RL Virus Res. 110(1-2):31-39(2005).
XX
RN [2]
RP 1-5129
RA Tuomivirta T.T., Hantula J.;
RT ;
RL Submitted (30-APR-2004) to the EMBL/GenBank/DDBJ databases.
RL Forest Pathology, Finnish Forest Reseach Institute, Vantaa Research Center,
RL Jokiniemenkuja 1, P.O.B. 18, Vantaa FIN-010301, Finland
XX
FH Key Location/Qualifiers
FH
FT source 1. .5129
FT /country="Finland"
FT /db_xref="taxon:279539"
FT /mol_type="genomic RNA"
FT /virion
FT /organism="Gremmeniella abietina RNA virus L2"
FT /isolate="SurS4"
FT /specific_host="Gremmeniella abietina type A"
FT CDS 272. .2602
FT /codon_start=1
FT /db_xref="InterPro:IPR008871"
FT /db_xref="UniProt/TrEMBL:Q6GYC1"
FT /product="putative coat protein"
FT /protein_id="AAT48884.1"
FT /translation="MANAYETNFQTANASPLTGTLADPVGGTIQADQYRRYRAGVFMSV
FT PDMGHVSNVGRSIFYEVGRHHGRARDLLAAPHAEAIPIDCSVDINAAEAANFEGMARRF
FT SNFSPQWVKMDLAGMVERLAKGVTAAGVFGGIDTGTLRGGQAIRVTALGTLDSPQTASI
FT NSVFIPRTVDTVGNDHVFAVLVSAANGEGAAVTTDVVRLDANTNQPMIPAVAGASFATA
FT CVEALRILGANMEASGAGDIFAYAVTRGVHAGVSVVAHTDEGGWFRNVLRFDRFRVPYG
FT GINQGLRQYPALPALASTSPSSIAAWVDAIALKTAAAVAHCDPLVPGEGGWYPSVFTAG
FT QNGTSAPGSSEGAGVGDLEARSIGRQIASDIGRFAPTYCRALGTLFGLHTSSGIAESHL
FT STVAMRALTQDVSTDRHLRHETVAPYFWIEPTSLIAVNAFGTPAEAEGYGSKVTPGDTR
FT SEPCFERFRLLQKGTTANHMTVAFKMRTARTSALVSAYAAAPAPLADLKLYQFDESSIV
FT LPGDQLPTQGDVASKHAAADPLSSYLWKRGQSCFPAPAEFINTNSNYGAKVRLVTWDDD
FT FNASLSDLPNDEEMATGVVTFRVTVPTGLASAGSNAENREAKRARTRGAIALAQAVLRA
FT RATGLAVSPSMEVSDVPPTFDTPPLLPAPIYGDTQSASGPRDPGPVPVLAVGGGLDVGR
FT IARGAPLPPTAHHMPQRAPRIAGAVVPPGGPTAGPPAAAGGPVAPNVLPPPPAGPADSQ
FT DPLPAPPAHLPTDATAAEAVPAQ"
FT CDS 2599. .5076
FT /codon_start=1
FT /db_xref="GOA:Q6GYC0"
FT /db_xref="InterPro:IPR003439"
FT /db_xref="InterPro:IPR007095"
FT /db_xref="InterPro:IPR008870"
FT /db_xref="UniProt/TrEMBL:Q6GYC0"
FT /product="putative RNA-dependent RNA polymerase"
FT /protein_id="AAT48885.1"
FT /translation="MIESPVSIRANEAGIVGQYLKGLLNMEWASGVMVLSFSQQISEVY
FT KPTFNGLRPTDLQRAAAAYLVPDFPVQVRIERGSVLSLLSQVIDPPARVTDRHSFRWLC
FT DPKASYAAFPPKQHPGAVNKVNVYLNEVASSLLSLDPAAYSSASQALWPYRGKIANDQA
FT SAIILYGYGLRAQAVPDAMHVAATLATTPDLAKALTNFLKATGANGSRLGALLCESNVL
FT LGRAAGPADLSEEARYRTSSDVESRLAIFSDADLSAAIDSVLDEEIKRVEGSQHIEFDS
FT YQEHWNDRWAWAVNGAHSGHVSKLYPRVPKPPGMLREHRRAWLESVTEDPRIDWDGKTF
FT VSASPKLEAGKTRAIFACDTVNYLAFEHLLAPVEKRWRNSKVILDPGRGGHLGMIFRTT
FT AARARAGVSMMLDYDDFNSHHSTRAMQILFQRLGDRVGYPADKLAKLVASFEKMYIYNG
FT MEQVGRVRGTLMSGHRGTTFINSVLNKAYLLIVLGEDLFERSXALHVGDDVYFGVRTYA
FT EAGEVVTRIKNSPLRMNRMKQSVGHVSTEFLRNATSGRSTYGYFARAVASTVSGNWVNE
FT MALSPSEALSSIIGAARTLVNRSGAENLPLLLHPSLVRMTGLPREDHKKLRELLLGTTA
FT LDNGPQYSLGGYYTSVSSLITIAASDRHGYTPLPREATTAYLSCAADPLEVNVLTQAGV
FT SVVSAMEEASFRKSLPARYTGYETLRLGPKSLIRSIGTASVADLISVSPPRGVLERYPL
FT LTLAKRRLPEYLVRWAVSVAGGNPSAPDIGMEAWGEFKHGCMIATPMSYSDAATFGKRT
FT VSTVLTCPLDAHV"
XX
SQ Sequence 5129 BP; 1054 A; 1531 C; 1369 G; 1174 T; 1 other;
AY615210 Length: 5129 May 3, 2005 08:56 Type: N Check: 807 ..
1 tgataagacg ccagtcgata ccgaaaggtt cctgcttgcg tgcgttccct
51 actactggga gtgcgggatt ccgagtgtcc ctttatctac tactcgtgtt
101 gtgagatatg gcgaaagccc ctatctcgct gtgtgcccca tggtcccctg
151 gaccgcgcaa ccgtgacctg aaaagactct tggtagcatc gggctttgtt
201 atagtggccg ggcgagggtt ccgaagaccc ctaaaactac aacaattgca
251 cacttacaca acttctcaac tatggccaac gcctacgaga ccaatttcca
301 aaccgccaat gctagcccac ttactgggac cctagctgac ccggtcggcg
351 gtacgatcca agccgaccaa taccgtcgct atcgcgccgg tgttttcatg
401 tccgtcccgg acatgggcca tgtgagcaac gtgggacgca gcatcttcta
451 cgaagttggg cgtcaccacg gccgcgctcg cgacctctta gccgcgcccc
501 acgcggaagc tatccctatc gactgcagtg tcgatatcaa cgctgctgaa
551 gcagcaaact tcgaagggat ggctcgccgc ttctcgaatt ttagcccgca
601 atgggttaag atggacctgg ctgggatggt cgaacgcctc gccaaaggtg
651 tcactgctgc cggtgttttc ggtggtattg atacaggcac tctacggggt
701 ggacaggcca tccgggttac cgcactcggt accttggact cgcctcagac
751 ggcgtctatc aacagtgtct ttattcctcg cactgttgac accgtcggca
801 acgatcacgt ctttgctgtc cttgtatccg ctgctaacgg agaaggggct
851 gccgttacga ccgacgtggt tcggctggat gctaacacca accagcccat
901 gatcccagca gtggcaggtg cctcctttgc tactgcttgc gttgaagccc
951 tccgcatcct cggagccaat atggaggcat cgggcgcagg cgatattttc
1001 gcttacgctg taactcgtgg cgtccatgcg ggtgtatctg tggtcgccca
1051 taccgacgaa ggcggctggt tccgtaatgt tttgagattt gatcgtttcc
1101 gtgttccgta cggcggtatc aaccaggggt tgcgccagta tcctgctctc
1151 ccggctttgg cgtcgacctc accttcttcg atagcagcat gggtggacgc
1201 tatcgccttg aagaccgccg ctgctgtcgc tcattgcgac cctctcgttc
1251 ccggtgaagg cggatggtac ccttcagttt ttacagctgg gcagaacggg
1301 acctccgctc ccgggtcaag tgaaggtgcc ggggtcggtg acttggaggc
1351 ccgttccatc ggtaggcaga tcgcttctga catcgggcgc tttgcaccta
1401 cctactgccg cgcgctgggt acactcttcg ggctgcatac ttcgagtggt
1451 atcgcagaga gtcacctctc aaccgtcgct atgcgtgctc taacccagga
1501 cgtgagcact gaccgacatc tgcgacacga aactgtcgct ccctacttct
1551 ggattgagcc cacttcgctc attgcagtca atgcattcgg cactcccgcc
1601 gaagcagagg ggtacggttc aaaagtcacc cctggtgata cgcgaagtga
1651 accatgcttc gaacgcttca ggctgttgca gaaaggtact actgccaacc
1701 acatgacagt agcgttcaag atgcgtacgg cccggacttc ggccttggtt
1751 agcgcgtatg ctgcagcgcc tgctcccttg gcagacctca agctgtatca
1801 gtttgatgag tcttctatag tgctgcccgg cgatcagcta cctacccagg
1851 gtgacgtagc ttccaaacac gccgccgccg acccactctc ttcatattta
1901 tggaagaggg gtcagtcgtg cttccctgcg cccgcggagt tcatcaacac
1951 gaattccaat tacggcgcta aagttaggtt ggtcacatgg gacgatgatt
2001 tcaacgcttc cttgtctgac ctccccaacg atgaggagat ggcgactggc
2051 gttgtcacat tccgcgtgac ggtaccgacc ggcctcgcta gtgctggtag
2101 caacgctgaa aatcgcgaag ctaaacgtgc tcgtacccgc ggtgccatcg
2151 ctttagccca agcagtcttg cgagctaggg ctaccggtct ggctgtttcc
2201 ccctcgatgg aggttagcga tgtgccgcct acattcgaca cgcccccgct
2251 actcccggcc ccgatatacg gcgacaccca gtctgcgtcc ggaccgcgcg
2301 atcctggacc ggtaccagtg ctcgctgtcg gcggaggcct ggacgtcggc
2351 aggattgcgc gtggtgcacc tctgcctccg acggcacatc acatgccgca
2401 acgtgctcct aggattgctg gtgctgtcgt accgcccggt ggacctaccg
2451 ctggccctcc agctgccgct ggcggtcctg tagccccgaa cgtcctccca
2501 cctcctcccg ctggccccgc tgattcacag gatcccctcc ccgccccacc
2551 ggcacacttg ccaaccgatg ccactgctgc tgaagcagtg cccgctcaat
2601 gattgagtcc cctgtgtcta tacgagctaa tgaagccggc atcgtaggac
2651 aatacctgaa agggcttctc aacatggagt gggcgtctgg cgttatggtg
2701 ttatctttct ctcagcagat ttcggaggtc tacaaaccga cattcaacgg
2751 tttgagaccg acggatttac aaagggcagc tgctgcatat cttgttcccg
2801 attttcctgt acaagtccgt atcgaacgcg gatctgtact ctccttacta
2851 tctcaagtca tcgaccctcc ggctagagtg accgaccgcc attcgttccg
2901 gtggttgtgt gatcccaagg cgtcctatgc tgcatttcca cctaagcaac
2951 atccgggcgc tgtgaacaaa gtgaacgttt atctcaacga ggtggcatcc
3001 tccctccttt ctctggatcc agccgcctac tcttctgcta gccaagccct
3051 ctggccatac agagggaaga tagccaacga ccaagcaagc gcaattattc
3101 tgtacggcta cggtctacgc gcacaggctg tacccgacgc tatgcacgtg
3151 gctgctacgc ttgcgaccac tcccgatctg gcaaaggccc tcaccaactt
3201 cctcaaagca acgggcgcca acggttcgcg tttgggtgct ctcctatgcg
3251 aaagcaacgt ccttctgggt cgcgctgctg ggcccgccga tctctcagag
3301 gaggcccgat atcgtacgag cagcgatgtc gagagtcgtc tggctatctt
3351 cagtgacgct gacttgagtg cggctatcga cagtgtctta gatgaagaga
3401 tcaaacgagt cgagggctcg cagcacattg agttcgactc gtatcaagag
3451 cactggaacg accggtgggc ttgggcagtc aacggagccc actcaggcca
3501 cgtctcaaag ctatatcctc gcgtgccaaa gccaccagga atgctccgtg
3551 aacacagacg cgcttggctc gaaagtgtga ctgaggaccc acgtatcgat
3601 tgggacggta agacattcgt gtccgcatct ccgaaattag aagccgggaa
3651 gactcgagca atctttgcat gcgatactgt gaactacctc gctttcgagc
3701 atctgcttgc accggtagaa aaacgctggc ggaattccaa agtgattctg
3751 gatcctggac gtggcggtca tctcggcatg attttccgta cgacagctgc
3801 tcgtgcccgt gccggtgtct ccatgatgtt ggattatgat gatttcaatt
3851 ctcaccattc tacacgagcg atgcagatac tattccagcg tttaggagac
3901 cgcgttggtt acccagctga caaactggct aaacttgtcg cttcattcga
3951 gaaaatgtac atttacaatg gaatggagca agtcggtcgt gtgagaggta
4001 cactaatgag tggccatcga ggcacgacct tcatcaattc cgtcttgaac
4051 aaggcgtatc tccttatcgt actaggagaa gacttgtttg agcgcagcgk
4101 ggctttgcac gtgggtgacg atgtttactt cggtgtacgt acgtatgctg
4151 aagcaggcga agtcgttacc cggatcaaga attcgcctct gcgtatgaac
4201 cgaatgaagc aatcggtagg tcacgtatct actgagttct tacgcaacgc
4251 cacctcaggc cggtccacct acggatattt cgctcgtgct gtagccagca
4301 ccgtatccgg aaactgggtg aatgagatgg ccctcagtcc aagcgaggcg
4351 cttagctcta taatcggggc tgcgcgcacc ctcgttaacc gatccggcgc
4401 agaaaacttg ccactgctcc tccacccaag tcttgttcgc atgacgggtt
4451 taccaaggga ggaccacaag aagctgcgcg aattgctgtt ggggacaaca
4501 gctttggata acggccccca atacagcctg gggggctact acacatccgt
4551 cagcagccta atcactatcg ccgctagtga ccgtcacggc tacaccccgc
4601 tcccccgcga ggcaacaact gcttatttaa gctgtgccgc ggacccgctc
4651 gaagtgaacg tgttgaccca agctggtgtc agcgttgtca gcgcaatgga
4701 agaggcgagt ttcaggaagt cgcttccggc tcgctatact ggctacgaga
4751 cattacggct aggccctaag tcattgatca ggtctatagg tacagcatcc
4801 gttgctgacc tcatctccgt ttcccccccc cgcggagttc ttgaacgcta
4851 ccctctcctc accctggcga aaaggaggct cccagagtac ttagtacgct
4901 gggcagtctc tgtcgccggc ggcaaccctt ctgcccccga catcggcatg
4951 gaggcttggg gggaatttaa acacggctgc atgattgcga ctccgatgtc
5001 gtactccgat gcagctacct ttggcaagcg gacagtttca actgtattaa
5051 cttgcccact tgacgcccac gtgtaagcta ccccagctta cggtgtcaag
5101 aaattcgagg ccctaagggg ccaaattgc