Sequence of DPV Beet black scorch virus
Beet black scorch virus, complete genome.
ACC No: AY626780
Dated: 2006-09-14 | Length: 3644 | CRC: -582785375
ID AY626780; SV 1; linear; genomic RNA; STD; VRL; 3644 BP.
XX
AC AY626780;
XX
DT 14-JUN-2004 (Rel. 80, Created)
DT 14-SEP-2006 (Rel. 89, Last updated, Version 2)
XX
DE Beet black scorch virus, complete genome.
XX
KW .
XX
OS Beet black scorch virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Necrovirus.
XX
RN [1]
RP 1-3644
RX PUBMED; 16963767.
RA Yuan X., Cao Y., Xi D., Guo L., Han C., Li D., Zhai Y., Yu J.;
RT "Analysis of the subgenomic RNAs and the small open reading frames of Beet
RT black scorch virus";
RL J. Gen. Virol. 87(PT 10):3077-3086(2006).
XX
RN [2]
RP 1-3644
RA Xi D., Cao Y., Cai Z., Li D., Yu J.;
RT ;
RL Submitted (16-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL State Key Laboratory for Agrobiotechnology, China Agricultural University,
RL 2 Yuanmingyuan West Road, Beijing 100094, P.R.China
XX
FH Key Location/Qualifiers
FH
FT source 1. .3644
FT /organism="Beet black scorch virus"
FT /isolate="Xinjiang"
FT /mol_type="genomic RNA"
FT /virion
FT /db_xref="taxon:196375"
FT gene 36. .2210
FT /gene="ORF2"
FT CDS 36. .2210
FT /codon_start=1
FT /transl_except=(pos:645. .647,aa:OTHER)
FT /gene="ORF2"
FT /product="82K protein"
FT /note="RNA polymerase; produced by translational
FT readthrough of ORF1"
FT /db_xref="GOA:Q6ITE0"
FT /db_xref="InterPro:IPR002166"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR013707"
FT /db_xref="UniProtKB/TrEMBL:Q6ITE0"
FT /protein_id="AAT44839.1"
FT /translation="MDSIPYVILRILDFIFHSIFFPSLLFIINHNTTILWACACAYGFY
FT RAFRLIFKIKVEVHPATRAVFKDMVTRFQRESMFSPDDEVPEGIPIHEDVDLVSDPTHK
FT DIKRVRASRRVSYAVRVAHVAKSKVGLLANTKANELVYSRLCRDEMVTHGVRPSHIAHA
FT VPLAVAACFIPLDSDFLAASIRNCDEMEERRAVLGPSYGKXGGLLCTSGFTTPTWRGNP
FT EGLLVKRGPPLAKPRKLYRFSGFGTHIRYGVHDHSLGNVRKGLVVRLFMVETKDGLAPT
FT PQPTPGVYAKLSRFHDLVSANLTSTTRLTYEQFLGFYSGRKLERYQQPVESLAIRPIGV
FT QDAWLSTFVKAEKLNISAKPDPAPRVIQPRSPRYNVEVGRFLRHAEEHLFDAINRVYGG
FT RSVFKGLNADQAGMEMQAMWQEFDNPVGIGMDASRFDQQVSKEALEFEHKIWLSMYRGA
FT DRKTLSKLLGMQIHNRGLARCPDGEIRYTVEGCRMSGDINTSSGNCYIMCASVHNYCSQ
FT LGVKRFRLANNGDDCMLVVEAKDEARVRQGLIEYYRELGFTMKVEPTVYELEHLEFCQT
FT RPVLVDGAYRMVRNLHQGMCKDVHSLHDLGSRKAAEARVSAVGTGGRVMNDGVPVLKSF
FT FMQFPLSSGPKTKSDMSVPLQEDWKYKFNRTGCFKNLAPTPQSRYSFWRAFGVLPDEQI
FT ALENGFSRLSFDKLDQDTQEEVSLLQFSGA"
FT gene 36. .647
FT /gene="ORF1"
FT CDS 36. .647
FT /codon_start=1
FT /gene="ORF1"
FT /product="23K protein"
FT /note="RNA polymerase"
FT /db_xref="InterPro:IPR013707"
FT /db_xref="UniProtKB/TrEMBL:Q8B5R9"
FT /protein_id="AAT44838.1"
FT /translation="MDSIPYVILRILDFIFHSIFFPSLLFIINHNTTILWACACAYGFY
FT RAFRLIFKIKVEVHPATRAVFKDMVTRFQRESMFSPDDEVPEGIPIHEDVDLVSDPTHK
FT DIKRVRASRRVSYAVRVAHVAKSKVGLLANTKANELVYSRLCRDEMVTHGVRPSHIAHA
FT VPLAVAACFIPLDSDFLAASIRNCDEMEERRAVLGPSYGK"
FT gene 2107. .2244
FT /gene="ORF3"
FT CDS 2107. .2244
FT /codon_start=1
FT /gene="ORF3"
FT /product="5K protein"
FT /db_xref="UniProtKB/TrEMBL:Q6ITD8"
FT /protein_id="AAT44840.1"
FT /translation="MNRLPWRMGFLVSALISWTRTPRRRSASSSSLGHENLTTFHGTTA
FT "
FT gene 2228. .2419
FT /gene="ORF4"
FT CDS 2228. .2419
FT /codon_start=1
FT /gene="ORF4"
FT /product="7K protein A"
FT /db_xref="UniProtKB/TrEMBL:Q6ITD7"
FT /protein_id="AAT44841.1"
FT /translation="MEQQRSEQRRERRVRSRSEDRKSMSDVGQSAVNREADVKKDMGPS
FT VSMTVVGENVEFTQHFHF"
FT gene 2421. .2618
FT /gene="ORF5"
FT CDS 2421. .2618
FT /codon_start=1
FT /gene="ORF5"
FT /product="7K protein B"
FT /db_xref="UniProtKB/TrEMBL:Q6ITD6"
FT /protein_id="AAT44842.1"
FT /translation="MSIIYVVQEKPSGFLVWALVVAIVCIIGLLSYTPPERLNHSYHEN
FT NQKTQYITIGGASTSKVSTN"
FT gene 2647. .3345
FT /gene="ORF6"
FT CDS 2647. .3345
FT /codon_start=1
FT /gene="ORF6"
FT /product="coat protein"
FT /db_xref="GOA:Q6ITD5"
FT /db_xref="HSSP:Q9IPS9"
FT /db_xref="InterPro:IPR000937"
FT /db_xref="UniProtKB/TrEMBL:Q6ITD5"
FT /protein_id="AAT44843.1"
FT /translation="MAPKRNKGGKKSRMSDETVRAPAAGGVIQRTPGIPPRIRSTTIGT
FT RVTNTELLAGVNVAAAGAFSVVGAGLFPSNLGWLNGIASNYSKFRWLAIKLIYIPIVPT
FT TTAGAMTMALSYDPADATPTSFQQVQQMYNSITAPVWAGFDGATVQLLGERPTTGAVCI
FT DVDVNRFGFTWYRYATLAAITALTANDRNLYIPSVCNVATSGGTAATNVGNLMIKYSIE
FT LIEPIPAAIN"
XX
SQ Sequence 3644 BP; 895 A; 863 C; 944 G; 942 T; 0 other;
ay626780 Length: 3644 14-SEP-2006 Type: N Check: 4121 ..
1 aagaaaccta accagttttt cgttgatcag cgatcatgga ttcaatcccg
51 tatgtgatcc tgcgcatact cgattttatc ttccactcca tcttctttcc
101 atctttactc tttatcatca accacaacac caccatcctg tgggcatgtg
151 cctgtgccta tgggttctac cgtgcattcc gcctcatctt caagataaag
201 gtggaagtac acccagccac ccgagccgtc ttcaaggata tggtcactcg
251 cttccagcgg gagagtatgt tctcacctga cgacgaagtg ccggagggca
301 tccctatcca cgaggatgtt gaccttgtta gcgaccccac acacaaagat
351 attaagcggg tccgtgctag caggcgagtc tcttatgccg tgagggttgc
401 ccatgtagcc aagtctaagg tgggattgct cgccaatacc aaggcgaatg
451 agctggtgta ctcccgtctt tgccgagacg agatggttac ccacggtgtg
501 cgcccatcgc acattgcaca cgcagtgccg cttgctgtcg cggcctgctt
551 cataccgttg gacagtgatt tccttgcagc ttctattaga aactgcgatg
601 agatggagga gcggagggcc gtactagggc cctcatatgg aaaataggga
651 ggcctactct gcaccagcgg gtttaccacg cctacttggc gtggtaatcc
701 agagggtttg ctggtgaaga gaggaccacc tctggccaaa cctaggaaac
751 tgtaccgttt ttctgggttt gggactcata tacggtacgg agtgcacgat
801 cactcattgg gcaatgtgcg gaagggactt gttgtgcggc tattcatggt
851 tgaaaccaag gatggcttag ctccaacacc acagcccacc cctggcgtgt
901 acgccaagtt atcccggttt catgaccttg ttagtgccaa cctaacctcg
951 accaccagat taacatacga gcaattcctc ggattttatt ctggtcgcaa
1001 attagagagg taccaacagc ccgtggagtc gttagcaatc cgcccaatag
1051 gggtacagga tgcttggctt agcacgtttg ttaaggctga aaaattaaac
1101 atctcagcca aacccgaccc ggcacctagg gttattcagc ctaggtcgcc
1151 gaggtacaat gtggaagttg gacggttcct cagacacgct gaggaacatc
1201 tgttcgacgc catcaaccgt gtgtatggtg ggcgatcggt attcaagggg
1251 ttgaatgccg atcaggctgg catggagatg caagctatgt ggcaagaatt
1301 cgacaatcct gtgggtattg gtatggatgc ctctcgtttc gaccaacaag
1351 tctctaagga ggcgttggag tttgaacaca aaatctggct atccatgtac
1401 cgtggggctg acaggaaaac attgtcgaag ctgttgggga tgcaaatcca
1451 caaccgcggt cttgccagat gccctgatgg agaaatcagg tacacggttg
1501 aggggtgtcg tatgtctggg gacatcaaca catcttctgg aaactgctat
1551 atcatgtgtg cttcggtgca caattattgt agccagttgg gtgtcaagag
1601 attcaggctt gccaacaatg gtgatgattg catgcttgtc gtcgaagcca
1651 aggatgaagc acgtgtcagg cagggactca tcgagtatta tagggaattg
1701 ggtttcacca tgaaagtgga acctacagtc tatgaactcg agcacttgga
1751 gttttgccag acacgtccag tccttgtcga tggggcatat cgaatggtgc
1801 gcaatcttca ccagggcatg tgtaaggatg ttcactcctt gcacgatctt
1851 ggtagtagga aagctgctga agctcgggtt tcagcggttg gtactggagg
1901 ccgcgtgatg aatgatggag taccagtgct caagtcattc ttcatgcagt
1951 ttcccctatc ctctggacct aaaaccaagt ctgacatgag tgtaccgttg
2001 caggaagatt ggaaatacaa attcaatcgg actgggtgtt tcaagaactt
2051 ggcacccact ccacaatccc gctactcatt ttggcgtgcg tttggagtgc
2101 taccagatga acagattgcc ctggagaatg ggttttctcg tctcagcttt
2151 gataagctgg accaggacac ccaggaggag gtcagcctcc tccagttctc
2201 tggggcatga aaacctaacc acttttcatg gaacaacagc gtagtgaaca
2251 acgtcgtgag cgtagagtga gaagtagatc ggaggacagg aagtctatgt
2301 ctgatgtagg gcaatctgct gtcaataggg aagcagatgt caagaaagat
2351 atgggtccat cggtttctat gacggtggtg ggggagaacg tagagtttac
2401 acaacatttc cacttctgaa atgagcatca tttatgtcgt acaggagaag
2451 ccctctgggt ttctcgtgtg ggcattggtt gttgcaattg tgtgcattat
2501 tggactctta tcgtacactc cacctgaaag acttaaccac tcttatcacg
2551 aaaacaatca gaagacgcaa tacataacta ttggaggagc atccactagt
2601 aaagtttcca cgaactgaat tttctgcttt ctagtatagt caataaatgg
2651 cacctaagcg caataaagga ggtaagaagt cccgcatgtc cgatgagaca
2701 gtgcgggctc ctgctgcagg gggcgttata caacgcacac ctggcattcc
2751 tccccgcatt aggtccacca ctattggcac gcgtgtcacc aacactgagc
2801 tgctcgctgg agtgaatgtc gctgcggcgg gagctttctc agttgttggc
2851 gctggtcttt tccccagcaa ccttggttgg ctcaatggga ttgcttccaa
2901 ttatagcaaa tttagatggc ttgctatcaa gctcatctac attcccattg
2951 ttcctaccac gaccgctggg gcaatgacca tggctttatc gtatgatcct
3001 gctgatgcta ctccaactag tttccaacaa gtgcaacaga tgtataacag
3051 catcacagca cctgtctggg ctggatttga tggagctact gttcagctgc
3101 taggggagag accaacaact ggggctgtgt gcattgatgt ggatgtaaat
3151 cggtttggat ttacatggta cagatatgct acgcttgctg ccattaccgc
3201 actcactgca aatgatagga atctttatat tcctagtgtt tgcaatgtgg
3251 ctacgtctgg tggtactgca gccaccaatg ttggcaatct gatgataaag
3301 tacagcattg agctcattga gccaatacct gctgccatta attagatccc
3351 acatcctggt gtggttaatc cagtgaaaaa tattaggaaa tccttggaat
3401 tcacacccca gggaggattg cttgcatagt gcaggtatgt tgagttacac
3451 tatgaggtat tggtgctgaa tcctggtaaa caggcttgac aggtttgggt
3501 ggttccagac cgatgtatta cccaagatac tcatggtact ctactagaaa
3551 acactatgcg tgcgcacacg gctggctatg tcctatcata gctgggggcc
3601 ccggagtgcg aaaccctctt atatacctgg tcttccaggt gccc