Sequence of DPV Beet black scorch virus
Beet black scorch virus, complete genome.
ACC No: AY626780
Dated: 2006-09-14 | Length: 3644 | CRC: -582785375
ID AY626780; SV 1; linear; genomic RNA; STD; VRL; 3644 BP. XX AC AY626780; XX DT 14-JUN-2004 (Rel. 80, Created) DT 14-SEP-2006 (Rel. 89, Last updated, Version 2) XX DE Beet black scorch virus, complete genome. XX KW . XX OS Beet black scorch virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae; OC Necrovirus. XX RN [1] RP 1-3644 RX PUBMED; 16963767. RA Yuan X., Cao Y., Xi D., Guo L., Han C., Li D., Zhai Y., Yu J.; RT "Analysis of the subgenomic RNAs and the small open reading frames of Beet RT black scorch virus"; RL J. Gen. Virol. 87(PT 10):3077-3086(2006). XX RN [2] RP 1-3644 RA Xi D., Cao Y., Cai Z., Li D., Yu J.; RT ; RL Submitted (16-MAY-2004) to the EMBL/GenBank/DDBJ databases. RL State Key Laboratory for Agrobiotechnology, China Agricultural University, RL 2 Yuanmingyuan West Road, Beijing 100094, P.R.China XX FH Key Location/Qualifiers FH FT source 1. .3644 FT /organism="Beet black scorch virus" FT /isolate="Xinjiang" FT /mol_type="genomic RNA" FT /virion FT /db_xref="taxon:196375" FT gene 36. .2210 FT /gene="ORF2" FT CDS 36. .2210 FT /codon_start=1 FT /transl_except=(pos:645. .647,aa:OTHER) FT /gene="ORF2" FT /product="82K protein" FT /note="RNA polymerase; produced by translational FT readthrough of ORF1" FT /db_xref="GOA:Q6ITE0" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:Q6ITE0" FT /protein_id="AAT44839.1" FT /translation="MDSIPYVILRILDFIFHSIFFPSLLFIINHNTTILWACACAYGFY FT RAFRLIFKIKVEVHPATRAVFKDMVTRFQRESMFSPDDEVPEGIPIHEDVDLVSDPTHK FT DIKRVRASRRVSYAVRVAHVAKSKVGLLANTKANELVYSRLCRDEMVTHGVRPSHIAHA FT VPLAVAACFIPLDSDFLAASIRNCDEMEERRAVLGPSYGKXGGLLCTSGFTTPTWRGNP FT EGLLVKRGPPLAKPRKLYRFSGFGTHIRYGVHDHSLGNVRKGLVVRLFMVETKDGLAPT FT PQPTPGVYAKLSRFHDLVSANLTSTTRLTYEQFLGFYSGRKLERYQQPVESLAIRPIGV FT QDAWLSTFVKAEKLNISAKPDPAPRVIQPRSPRYNVEVGRFLRHAEEHLFDAINRVYGG FT RSVFKGLNADQAGMEMQAMWQEFDNPVGIGMDASRFDQQVSKEALEFEHKIWLSMYRGA FT DRKTLSKLLGMQIHNRGLARCPDGEIRYTVEGCRMSGDINTSSGNCYIMCASVHNYCSQ FT LGVKRFRLANNGDDCMLVVEAKDEARVRQGLIEYYRELGFTMKVEPTVYELEHLEFCQT FT RPVLVDGAYRMVRNLHQGMCKDVHSLHDLGSRKAAEARVSAVGTGGRVMNDGVPVLKSF FT FMQFPLSSGPKTKSDMSVPLQEDWKYKFNRTGCFKNLAPTPQSRYSFWRAFGVLPDEQI FT ALENGFSRLSFDKLDQDTQEEVSLLQFSGA" FT gene 36. .647 FT /gene="ORF1" FT CDS 36. .647 FT /codon_start=1 FT /gene="ORF1" FT /product="23K protein" FT /note="RNA polymerase" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:Q8B5R9" FT /protein_id="AAT44838.1" FT /translation="MDSIPYVILRILDFIFHSIFFPSLLFIINHNTTILWACACAYGFY FT RAFRLIFKIKVEVHPATRAVFKDMVTRFQRESMFSPDDEVPEGIPIHEDVDLVSDPTHK FT DIKRVRASRRVSYAVRVAHVAKSKVGLLANTKANELVYSRLCRDEMVTHGVRPSHIAHA FT VPLAVAACFIPLDSDFLAASIRNCDEMEERRAVLGPSYGK" FT gene 2107. .2244 FT /gene="ORF3" FT CDS 2107. .2244 FT /codon_start=1 FT /gene="ORF3" FT /product="5K protein" FT /db_xref="UniProtKB/TrEMBL:Q6ITD8" FT /protein_id="AAT44840.1" FT /translation="MNRLPWRMGFLVSALISWTRTPRRRSASSSSLGHENLTTFHGTTA FT " FT gene 2228. .2419 FT /gene="ORF4" FT CDS 2228. .2419 FT /codon_start=1 FT /gene="ORF4" FT /product="7K protein A" FT /db_xref="UniProtKB/TrEMBL:Q6ITD7" FT /protein_id="AAT44841.1" FT /translation="MEQQRSEQRRERRVRSRSEDRKSMSDVGQSAVNREADVKKDMGPS FT VSMTVVGENVEFTQHFHF" FT gene 2421. .2618 FT /gene="ORF5" FT CDS 2421. .2618 FT /codon_start=1 FT /gene="ORF5" FT /product="7K protein B" FT /db_xref="UniProtKB/TrEMBL:Q6ITD6" FT /protein_id="AAT44842.1" FT /translation="MSIIYVVQEKPSGFLVWALVVAIVCIIGLLSYTPPERLNHSYHEN FT NQKTQYITIGGASTSKVSTN" FT gene 2647. .3345 FT /gene="ORF6" FT CDS 2647. .3345 FT /codon_start=1 FT /gene="ORF6" FT /product="coat protein" FT /db_xref="GOA:Q6ITD5" FT /db_xref="HSSP:Q9IPS9" FT /db_xref="InterPro:IPR000937" FT /db_xref="UniProtKB/TrEMBL:Q6ITD5" FT /protein_id="AAT44843.1" FT /translation="MAPKRNKGGKKSRMSDETVRAPAAGGVIQRTPGIPPRIRSTTIGT FT RVTNTELLAGVNVAAAGAFSVVGAGLFPSNLGWLNGIASNYSKFRWLAIKLIYIPIVPT FT TTAGAMTMALSYDPADATPTSFQQVQQMYNSITAPVWAGFDGATVQLLGERPTTGAVCI FT DVDVNRFGFTWYRYATLAAITALTANDRNLYIPSVCNVATSGGTAATNVGNLMIKYSIE FT LIEPIPAAIN" XX SQ Sequence 3644 BP; 895 A; 863 C; 944 G; 942 T; 0 other; ay626780 Length: 3644 14-SEP-2006 Type: N Check: 4121 .. 1 aagaaaccta accagttttt cgttgatcag cgatcatgga ttcaatcccg 51 tatgtgatcc tgcgcatact cgattttatc ttccactcca tcttctttcc 101 atctttactc tttatcatca accacaacac caccatcctg tgggcatgtg 151 cctgtgccta tgggttctac cgtgcattcc gcctcatctt caagataaag 201 gtggaagtac acccagccac ccgagccgtc ttcaaggata tggtcactcg 251 cttccagcgg gagagtatgt tctcacctga cgacgaagtg ccggagggca 301 tccctatcca cgaggatgtt gaccttgtta gcgaccccac acacaaagat 351 attaagcggg tccgtgctag caggcgagtc tcttatgccg tgagggttgc 401 ccatgtagcc aagtctaagg tgggattgct cgccaatacc aaggcgaatg 451 agctggtgta ctcccgtctt tgccgagacg agatggttac ccacggtgtg 501 cgcccatcgc acattgcaca cgcagtgccg cttgctgtcg cggcctgctt 551 cataccgttg gacagtgatt tccttgcagc ttctattaga aactgcgatg 601 agatggagga gcggagggcc gtactagggc cctcatatgg aaaataggga 651 ggcctactct gcaccagcgg gtttaccacg cctacttggc gtggtaatcc 701 agagggtttg ctggtgaaga gaggaccacc tctggccaaa cctaggaaac 751 tgtaccgttt ttctgggttt gggactcata tacggtacgg agtgcacgat 801 cactcattgg gcaatgtgcg gaagggactt gttgtgcggc tattcatggt 851 tgaaaccaag gatggcttag ctccaacacc acagcccacc cctggcgtgt 901 acgccaagtt atcccggttt catgaccttg ttagtgccaa cctaacctcg 951 accaccagat taacatacga gcaattcctc ggattttatt ctggtcgcaa 1001 attagagagg taccaacagc ccgtggagtc gttagcaatc cgcccaatag 1051 gggtacagga tgcttggctt agcacgtttg ttaaggctga aaaattaaac 1101 atctcagcca aacccgaccc ggcacctagg gttattcagc ctaggtcgcc 1151 gaggtacaat gtggaagttg gacggttcct cagacacgct gaggaacatc 1201 tgttcgacgc catcaaccgt gtgtatggtg ggcgatcggt attcaagggg 1251 ttgaatgccg atcaggctgg catggagatg caagctatgt ggcaagaatt 1301 cgacaatcct gtgggtattg gtatggatgc ctctcgtttc gaccaacaag 1351 tctctaagga ggcgttggag tttgaacaca aaatctggct atccatgtac 1401 cgtggggctg acaggaaaac attgtcgaag ctgttgggga tgcaaatcca 1451 caaccgcggt cttgccagat gccctgatgg agaaatcagg tacacggttg 1501 aggggtgtcg tatgtctggg gacatcaaca catcttctgg aaactgctat 1551 atcatgtgtg cttcggtgca caattattgt agccagttgg gtgtcaagag 1601 attcaggctt gccaacaatg gtgatgattg catgcttgtc gtcgaagcca 1651 aggatgaagc acgtgtcagg cagggactca tcgagtatta tagggaattg 1701 ggtttcacca tgaaagtgga acctacagtc tatgaactcg agcacttgga 1751 gttttgccag acacgtccag tccttgtcga tggggcatat cgaatggtgc 1801 gcaatcttca ccagggcatg tgtaaggatg ttcactcctt gcacgatctt 1851 ggtagtagga aagctgctga agctcgggtt tcagcggttg gtactggagg 1901 ccgcgtgatg aatgatggag taccagtgct caagtcattc ttcatgcagt 1951 ttcccctatc ctctggacct aaaaccaagt ctgacatgag tgtaccgttg 2001 caggaagatt ggaaatacaa attcaatcgg actgggtgtt tcaagaactt 2051 ggcacccact ccacaatccc gctactcatt ttggcgtgcg tttggagtgc 2101 taccagatga acagattgcc ctggagaatg ggttttctcg tctcagcttt 2151 gataagctgg accaggacac ccaggaggag gtcagcctcc tccagttctc 2201 tggggcatga aaacctaacc acttttcatg gaacaacagc gtagtgaaca 2251 acgtcgtgag cgtagagtga gaagtagatc ggaggacagg aagtctatgt 2301 ctgatgtagg gcaatctgct gtcaataggg aagcagatgt caagaaagat 2351 atgggtccat cggtttctat gacggtggtg ggggagaacg tagagtttac 2401 acaacatttc cacttctgaa atgagcatca tttatgtcgt acaggagaag 2451 ccctctgggt ttctcgtgtg ggcattggtt gttgcaattg tgtgcattat 2501 tggactctta tcgtacactc cacctgaaag acttaaccac tcttatcacg 2551 aaaacaatca gaagacgcaa tacataacta ttggaggagc atccactagt 2601 aaagtttcca cgaactgaat tttctgcttt ctagtatagt caataaatgg 2651 cacctaagcg caataaagga ggtaagaagt cccgcatgtc cgatgagaca 2701 gtgcgggctc ctgctgcagg gggcgttata caacgcacac ctggcattcc 2751 tccccgcatt aggtccacca ctattggcac gcgtgtcacc aacactgagc 2801 tgctcgctgg agtgaatgtc gctgcggcgg gagctttctc agttgttggc 2851 gctggtcttt tccccagcaa ccttggttgg ctcaatggga ttgcttccaa 2901 ttatagcaaa tttagatggc ttgctatcaa gctcatctac attcccattg 2951 ttcctaccac gaccgctggg gcaatgacca tggctttatc gtatgatcct 3001 gctgatgcta ctccaactag tttccaacaa gtgcaacaga tgtataacag 3051 catcacagca cctgtctggg ctggatttga tggagctact gttcagctgc 3101 taggggagag accaacaact ggggctgtgt gcattgatgt ggatgtaaat 3151 cggtttggat ttacatggta cagatatgct acgcttgctg ccattaccgc 3201 actcactgca aatgatagga atctttatat tcctagtgtt tgcaatgtgg 3251 ctacgtctgg tggtactgca gccaccaatg ttggcaatct gatgataaag 3301 tacagcattg agctcattga gccaatacct gctgccatta attagatccc 3351 acatcctggt gtggttaatc cagtgaaaaa tattaggaaa tccttggaat 3401 tcacacccca gggaggattg cttgcatagt gcaggtatgt tgagttacac 3451 tatgaggtat tggtgctgaa tcctggtaaa caggcttgac aggtttgggt 3501 ggttccagac cgatgtatta cccaagatac tcatggtact ctactagaaa 3551 acactatgcg tgcgcacacg gctggctatg tcctatcata gctgggggcc 3601 ccggagtgcg aaaccctctt atatacctgg tcttccaggt gccc