Sequence of DPV Corchorus yellow vein virus
Corchorus yellow vein Vietnam virus segment DNA A, complete sequence.
ACC No: AY727903
Dated: 2006-03-14 | Length: 2724 | CRC: -340463385
ID AY727903 standard; circular genomic DNA; VRL; 2724 BP.
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AC AY727903;
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SV AY727903.1
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DT 21-SEP-2004 (Rel. 81, Created)
DT 14-MAR-2006 (Rel. 87, Last updated, Version 2)
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DE Corchorus yellow vein Vietnam virus segment DNA A, complete sequence.
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KW .
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OS Corchorus yellow vein virus - [Hoa Binh]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2724
RX PUBMED; 16528050.
RA Ha C., Coombs S., Revill P., Harding R., Vu M., Dale J.;
RT "Corchorus yellow vein virus, a New World geminivirus from the Old World";
RL J. Gen. Virol. 87(PT 4):997-1003(2006).
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RN [2]
RP 1-2724
RA Ha C.V., Coombs S., Revill P.A., Harding R.M., Vu M.T., Dale J.L.;
RT ;
RL Submitted (18-AUG-2004) to the EMBL/GenBank/DDBJ databases.
RL Science Research Centre, Faculty of Science, Queensland University of
RL Technology, 2 George Street, Brisbane, Queensland 4001, Australia
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FH Key Location/Qualifiers
FH
FT source 1. .2724
FT /organism="Corchorus yellow vein virus - [Hoa Binh]"
FT /segment="DNA A"
FT /specific_host="Corchorus capsularis (Jute mallow)"
FT /isolate="Hoa Binh"
FT /mol_type="genomic DNA"
FT /country="Viet Nam"
FT /db_xref="taxon:293284"
FT gene 236. .1012
FT /gene="AV1"
FT CDS 236. .1012
FT /codon_start=1
FT /gene="AV1"
FT /product="CP protein"
FT /note="coat protein"
FT /db_xref="GOA:Q645H3"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:Q645H3"
FT /protein_id="AAU29403.1"
FT /translation="MPKRDAPWRLMAGTSKVSRSSNYSPRGGVSDSGSYLPRRFSRASL
FT WANRPMYRKPRIYRTYRSPDVPKGCEGPCKVQSFEQRHDIAHTGKVICLSDVTRGNGIT
FT HRVGKRFCVKSVYILGKIWMDENIKVKNHTNSVMFWLVRDRRPFGSPMDFGQVFNMYDN
FT EPSTATVKNDLRDRYQVMHRFSAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAAKYE
FT NHTENALLLYMACTHASNPVYATLKIRIYFYDSISN"
FT gene complement(1009. .1401)
FT /gene="AC3"
FT CDS complement(1009. .1401)
FT /codon_start=1
FT /gene="AC3"
FT /product="REn protein"
FT /note="replication enhancer"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:Q645H2"
FT /protein_id="AAU29406.1"
FT /translation="MDLRTAEPITASQAENSAFIWEVPNPLYFRIIDAWEYNRRNILMF
FT QIRFNHNLRRRLHLHKCFLNFRIWTTSSWLIRSFFQVFCSRINRYLYNIGVIGINNVIR
FT AIQYAVDSLPYVECNEQQHIIKFNLY"
FT gene complement(1139. .1564)
FT /gene="AC2"
FT CDS complement(1139. .1564)
FT /codon_start=1
FT /gene="AC2"
FT /product="TrAP protein"
FT /note="transactivation protein"
FT /db_xref="GOA:Q645H1"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:Q645H1"
FT /protein_id="AAU29405.1"
FT /translation="MTGPRRTPSTSPSRSLSTAPSIKPRHRHAKKVVRRRRIDLECGCT
FT IYVSISCREDGFTHRGTHHCVSGREFRFYLGGSKSPLFQDNRRLGIQPEEHTNVPDPVQ
FT PQLAEASSSSQVFPEFPHLDDIQLADQEFFSSFLFKD"
FT gene complement(1449. .2528)
FT /gene="AC1"
FT CDS complement(1449. .2528)
FT /codon_start=1
FT /gene="AC1"
FT /product="rep protein"
FT /note="replication-associated protein"
FT /db_xref="GOA:Q645H0"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProtKB/TrEMBL:Q645H0"
FT /protein_id="AAU29404.1"
FT /translation="MGSRFVKTASSFFLTWPRCPINKESALEQIKTLSLPTNIVYIRVC
FT EEKHQDGSPHLHALVQFQKKYRCTNCRLFDLSNPNSSQQYHCNIQTARSSSDAKSYIEK
FT DGVFCEWGEFKIDGRSSRGGQQSANDAYAKALNSGGKDEALTIIKELLPKDYVLQYHNL
FT NANLERIFAPPTTVYMPPFQTTTFNNVPEALTDWVTTNVADSAARPFRPISIIIEGPSR
FT TGKTLWARSLGPHNYLCGHLDLSPKVYSNNAWYNVIDDVDPHFLKHMKEFMGAQRDWQS
FT NCKYGKPIQIKGGIPTIFLCNPGPQSSYKEFFEEEKNKAINDWAKKNSIYITITEPLYS
FT TVDQASTSSRQESGSSETY"
FT gene complement(2087. .2377)
FT /gene="AC4"
FT CDS complement(2087. .2377)
FT /codon_start=1
FT /gene="AC4"
FT /product="C4 protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:Q645G9"
FT /protein_id="AAU29407.1"
FT /translation="MALRICMPWFNSRRSTDARTADCSIYPIQIHHNNTIVIYRLHAPP
FT PTPNRTSKKMEYSANGVNSRSTADHPEEDNNPQTMHTLKHLTAEVRTKLSQ"
XX
SQ Sequence 2724 BP; 698 A; 537 C; 640 G; 849 T; 0 other;
ay727903 Length: 2724 14-MAR-2006 Type: N Check: 3432 ..
1 accgtgcagc agccccgctt ttgccgtacg ctttacacgt gggtgacgat
51 tttattggaa tttgcaaaag taaagttatt tgttttattc agccaatcat
101 tgaatgattg gcgcgcctaa ttgttagtgc cggtacttgc tgcgtaagtt
151 tcaagagaat attaactgct ttgcgctatt ataaattgaa tttgaattgg
201 attgtactgc tgtgggtcct tattcgataa ggataatgcc taagcgcgat
251 gccccatggc gcttgatggc gggaaccagt aaggttagcc gctcatctaa
301 ttattcgcct cgtggaggcg tttccgactc aggttcttat cttccacgta
351 gatttagcag ggcctcacta tgggcaaaca ggcccatgta taggaagccc
401 aggatctatc ggacctatag gtcccctgac gttcctaaag gttgtgaagg
451 gccttgtaag gtccagtcat ttgaacagcg tcacgatatt gctcatacag
501 ggaaggtcat atgtttatca gatgttacac gtggtaatgg tattacccac
551 cgtgttggta aacgtttctg tgttaagtct gtatatattt taggtaaaat
601 atggatggat gagaatatta aagttaagaa tcacactaac agtgttatgt
651 tctggttagt tagggataga aggccgtttg gttcaccgat ggattttgga
701 caggtgttca acatgtatga taatgagcca agtacagcga cagttaagaa
751 cgatctccgt gatcgttatc aggtcatgca tcggttttct gcaaaggtta
801 ctggtggaca gtatgctagc aatgagcagg ctctcgtgag gcgtttttgg
851 aaggtcaata accatgtggt ttataaccat caagaagccg ctaagtacga
901 gaatcacacg gagaatgcgt tgttattgta tatggcatgt actcatgcct
951 ctaatcctgt gtatgcaact ttgaagatac ggatctactt ttatgattcg
1001 atatctaatt aataaagatt gaattttatt atatgctgtt gttcattaca
1051 ttcaacataa ggcagtgaat ccacggcata ttgaatcgct ctaattacat
1101 tattaatgcc tataacacct atattatata aataacgatt aatccttgaa
1151 caaaaaactt gaaaaaaact cctgatcagc caactggatg tcgtccagat
1201 gcggaaattc aggaaacact tgtgaagatg aagacgcctc cgcaagttgt
1251 ggttgaaccg gatctggaac attagtatgt tcctccggtt gtattcccag
1301 gcgtcgatta tcctgaaata gaggggattt ggaacctccc agataaaagc
1351 ggaattctct gcctgagacg cagtgatggg ttccgcggtg cgtaaatcca
1401 tcttcacggc agcttatgct gacgtagatg gtgcagccac actccagatc
1451 aatacgtctc cgacgaacca ctttcttggc gtgacgatgt cgaggcttga
1501 tcgacggtgc tgtagagagg ctccgtgatg gtgatgtaga tggagttctt
1551 cttggcccag tcattgattg ctttgttctt ttcctcttcg aagaactcct
1601 tatatgaaga ttgtggacca ggattgcaga ggaagattgt tgggattcct
1651 cctttaattt gaataggttt cccgtacttg cagttcgatt gccagtctct
1701 ctgggccccc ataaattcct tcatatgttt gaggaagtgc ggatctacgt
1751 catcaatgac gttataccac gcattattag agtatacttt tgggctaaga
1801 tccaaatgcc cacacagata attgtgaggg cctaaactcc tggcccataa
1851 tgttttacct gttctggatg ggccttcgat tattatggat ataggtctga
1901 aaggccgcgc agcggaatcg gccacatttg ttgtgaccca atctgttaat
1951 gcttccggta cattgttaaa cgtcgtcgtt tggaatggcg gcatgtatac
2001 tgttgttggt ggagcgaata ttcgctctag attagcgtta agattatgat
2051 actgtaaaac ataatctttt ggaagtaatt ccttaattat tgtgagagct
2101 tcgtccttac ctccgctgtt aagtgcttta gcgtatgcat cgtttgcgga
2151 ttgttgtcct cctctggatg atcggccgtc gatcttgaat tcaccccatt
2201 cgcagaatac tccatctttt tcgatgtacg atttggcgtc ggaggaggag
2251 cgtgcagtct gtatattaca atggtattgt tgtgatgaat ttggattgga
2301 tagatcgaac aatctgcagt tcgtgcatct gtacttcttc tggaattgaa
2351 ccagggcatg cagatgcgga gagccatctt gatgtttttc ttcgcaaacc
2401 ctaatataga cgatattagt tggaagggaa agtgttttaa tttgctctaa
2451 ggctgactct ttgttgattg ggcatctagg ccaagttaaa aaaaaagaag
2501 atgctgtttt aacaaaacga cttcccatct tgcgttttat atcggtacac
2551 accaaagtct ctgtgtaccg atatatcggt acacaatata tactagtggc
2601 ctctataatg ctactaggcg tgcagcgcct tgatattccg gacgcgaggg
2651 gtattcatgg tcatttgcca ctcagtttag cgctattttt gggttccgat
2701 ccgctgctgc acgcctataa tatt