Sequence of DPV Corchorus yellow vein virus
Corchorus yellow vein Vietnam virus segment DNA A, complete sequence.
ACC No: AY727903
Dated: 2006-03-14 | Length: 2724 | CRC: -340463385
ID AY727903 standard; circular genomic DNA; VRL; 2724 BP. XX AC AY727903; XX SV AY727903.1 XX DT 21-SEP-2004 (Rel. 81, Created) DT 14-MAR-2006 (Rel. 87, Last updated, Version 2) XX DE Corchorus yellow vein Vietnam virus segment DNA A, complete sequence. XX KW . XX OS Corchorus yellow vein virus - [Hoa Binh] OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus; OC unclassified Begomovirus. XX RN [1] RP 1-2724 RX PUBMED; 16528050. RA Ha C., Coombs S., Revill P., Harding R., Vu M., Dale J.; RT "Corchorus yellow vein virus, a New World geminivirus from the Old World"; RL J. Gen. Virol. 87(PT 4):997-1003(2006). XX RN [2] RP 1-2724 RA Ha C.V., Coombs S., Revill P.A., Harding R.M., Vu M.T., Dale J.L.; RT ; RL Submitted (18-AUG-2004) to the EMBL/GenBank/DDBJ databases. RL Science Research Centre, Faculty of Science, Queensland University of RL Technology, 2 George Street, Brisbane, Queensland 4001, Australia XX FH Key Location/Qualifiers FH FT source 1. .2724 FT /organism="Corchorus yellow vein virus - [Hoa Binh]" FT /segment="DNA A" FT /specific_host="Corchorus capsularis (Jute mallow)" FT /isolate="Hoa Binh" FT /mol_type="genomic DNA" FT /country="Viet Nam" FT /db_xref="taxon:293284" FT gene 236. .1012 FT /gene="AV1" FT CDS 236. .1012 FT /codon_start=1 FT /gene="AV1" FT /product="CP protein" FT /note="coat protein" FT /db_xref="GOA:Q645H3" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q645H3" FT /protein_id="AAU29403.1" FT /translation="MPKRDAPWRLMAGTSKVSRSSNYSPRGGVSDSGSYLPRRFSRASL FT WANRPMYRKPRIYRTYRSPDVPKGCEGPCKVQSFEQRHDIAHTGKVICLSDVTRGNGIT FT HRVGKRFCVKSVYILGKIWMDENIKVKNHTNSVMFWLVRDRRPFGSPMDFGQVFNMYDN FT EPSTATVKNDLRDRYQVMHRFSAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATLKIRIYFYDSISN" FT gene complement(1009. .1401) FT /gene="AC3" FT CDS complement(1009. .1401) FT /codon_start=1 FT /gene="AC3" FT /product="REn protein" FT /note="replication enhancer" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q645H2" FT /protein_id="AAU29406.1" FT /translation="MDLRTAEPITASQAENSAFIWEVPNPLYFRIIDAWEYNRRNILMF FT QIRFNHNLRRRLHLHKCFLNFRIWTTSSWLIRSFFQVFCSRINRYLYNIGVIGINNVIR FT AIQYAVDSLPYVECNEQQHIIKFNLY" FT gene complement(1139. .1564) FT /gene="AC2" FT CDS complement(1139. .1564) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP protein" FT /note="transactivation protein" FT /db_xref="GOA:Q645H1" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q645H1" FT /protein_id="AAU29405.1" FT /translation="MTGPRRTPSTSPSRSLSTAPSIKPRHRHAKKVVRRRRIDLECGCT FT IYVSISCREDGFTHRGTHHCVSGREFRFYLGGSKSPLFQDNRRLGIQPEEHTNVPDPVQ FT PQLAEASSSSQVFPEFPHLDDIQLADQEFFSSFLFKD" FT gene complement(1449. .2528) FT /gene="AC1" FT CDS complement(1449. .2528) FT /codon_start=1 FT /gene="AC1" FT /product="rep protein" FT /note="replication-associated protein" FT /db_xref="GOA:Q645H0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="UniProtKB/TrEMBL:Q645H0" FT /protein_id="AAU29404.1" FT /translation="MGSRFVKTASSFFLTWPRCPINKESALEQIKTLSLPTNIVYIRVC FT EEKHQDGSPHLHALVQFQKKYRCTNCRLFDLSNPNSSQQYHCNIQTARSSSDAKSYIEK FT DGVFCEWGEFKIDGRSSRGGQQSANDAYAKALNSGGKDEALTIIKELLPKDYVLQYHNL FT NANLERIFAPPTTVYMPPFQTTTFNNVPEALTDWVTTNVADSAARPFRPISIIIEGPSR FT TGKTLWARSLGPHNYLCGHLDLSPKVYSNNAWYNVIDDVDPHFLKHMKEFMGAQRDWQS FT NCKYGKPIQIKGGIPTIFLCNPGPQSSYKEFFEEEKNKAINDWAKKNSIYITITEPLYS FT TVDQASTSSRQESGSSETY" FT gene complement(2087. .2377) FT /gene="AC4" FT CDS complement(2087. .2377) FT /codon_start=1 FT /gene="AC4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q645G9" FT /protein_id="AAU29407.1" FT /translation="MALRICMPWFNSRRSTDARTADCSIYPIQIHHNNTIVIYRLHAPP FT PTPNRTSKKMEYSANGVNSRSTADHPEEDNNPQTMHTLKHLTAEVRTKLSQ" XX SQ Sequence 2724 BP; 698 A; 537 C; 640 G; 849 T; 0 other; ay727903 Length: 2724 14-MAR-2006 Type: N Check: 3432 .. 1 accgtgcagc agccccgctt ttgccgtacg ctttacacgt gggtgacgat 51 tttattggaa tttgcaaaag taaagttatt tgttttattc agccaatcat 101 tgaatgattg gcgcgcctaa ttgttagtgc cggtacttgc tgcgtaagtt 151 tcaagagaat attaactgct ttgcgctatt ataaattgaa tttgaattgg 201 attgtactgc tgtgggtcct tattcgataa ggataatgcc taagcgcgat 251 gccccatggc gcttgatggc gggaaccagt aaggttagcc gctcatctaa 301 ttattcgcct cgtggaggcg tttccgactc aggttcttat cttccacgta 351 gatttagcag ggcctcacta tgggcaaaca ggcccatgta taggaagccc 401 aggatctatc ggacctatag gtcccctgac gttcctaaag gttgtgaagg 451 gccttgtaag gtccagtcat ttgaacagcg tcacgatatt gctcatacag 501 ggaaggtcat atgtttatca gatgttacac gtggtaatgg tattacccac 551 cgtgttggta aacgtttctg tgttaagtct gtatatattt taggtaaaat 601 atggatggat gagaatatta aagttaagaa tcacactaac agtgttatgt 651 tctggttagt tagggataga aggccgtttg gttcaccgat ggattttgga 701 caggtgttca acatgtatga taatgagcca agtacagcga cagttaagaa 751 cgatctccgt gatcgttatc aggtcatgca tcggttttct gcaaaggtta 801 ctggtggaca gtatgctagc aatgagcagg ctctcgtgag gcgtttttgg 851 aaggtcaata accatgtggt ttataaccat caagaagccg ctaagtacga 901 gaatcacacg gagaatgcgt tgttattgta tatggcatgt actcatgcct 951 ctaatcctgt gtatgcaact ttgaagatac ggatctactt ttatgattcg 1001 atatctaatt aataaagatt gaattttatt atatgctgtt gttcattaca 1051 ttcaacataa ggcagtgaat ccacggcata ttgaatcgct ctaattacat 1101 tattaatgcc tataacacct atattatata aataacgatt aatccttgaa 1151 caaaaaactt gaaaaaaact cctgatcagc caactggatg tcgtccagat 1201 gcggaaattc aggaaacact tgtgaagatg aagacgcctc cgcaagttgt 1251 ggttgaaccg gatctggaac attagtatgt tcctccggtt gtattcccag 1301 gcgtcgatta tcctgaaata gaggggattt ggaacctccc agataaaagc 1351 ggaattctct gcctgagacg cagtgatggg ttccgcggtg cgtaaatcca 1401 tcttcacggc agcttatgct gacgtagatg gtgcagccac actccagatc 1451 aatacgtctc cgacgaacca ctttcttggc gtgacgatgt cgaggcttga 1501 tcgacggtgc tgtagagagg ctccgtgatg gtgatgtaga tggagttctt 1551 cttggcccag tcattgattg ctttgttctt ttcctcttcg aagaactcct 1601 tatatgaaga ttgtggacca ggattgcaga ggaagattgt tgggattcct 1651 cctttaattt gaataggttt cccgtacttg cagttcgatt gccagtctct 1701 ctgggccccc ataaattcct tcatatgttt gaggaagtgc ggatctacgt 1751 catcaatgac gttataccac gcattattag agtatacttt tgggctaaga 1801 tccaaatgcc cacacagata attgtgaggg cctaaactcc tggcccataa 1851 tgttttacct gttctggatg ggccttcgat tattatggat ataggtctga 1901 aaggccgcgc agcggaatcg gccacatttg ttgtgaccca atctgttaat 1951 gcttccggta cattgttaaa cgtcgtcgtt tggaatggcg gcatgtatac 2001 tgttgttggt ggagcgaata ttcgctctag attagcgtta agattatgat 2051 actgtaaaac ataatctttt ggaagtaatt ccttaattat tgtgagagct 2101 tcgtccttac ctccgctgtt aagtgcttta gcgtatgcat cgtttgcgga 2151 ttgttgtcct cctctggatg atcggccgtc gatcttgaat tcaccccatt 2201 cgcagaatac tccatctttt tcgatgtacg atttggcgtc ggaggaggag 2251 cgtgcagtct gtatattaca atggtattgt tgtgatgaat ttggattgga 2301 tagatcgaac aatctgcagt tcgtgcatct gtacttcttc tggaattgaa 2351 ccagggcatg cagatgcgga gagccatctt gatgtttttc ttcgcaaacc 2401 ctaatataga cgatattagt tggaagggaa agtgttttaa tttgctctaa 2451 ggctgactct ttgttgattg ggcatctagg ccaagttaaa aaaaaagaag 2501 atgctgtttt aacaaaacga cttcccatct tgcgttttat atcggtacac 2551 accaaagtct ctgtgtaccg atatatcggt acacaatata tactagtggc 2601 ctctataatg ctactaggcg tgcagcgcct tgatattccg gacgcgaggg 2651 gtattcatgg tcatttgcca ctcagtttag cgctattttt gggttccgat 2701 ccgctgctgc acgcctataa tatt