Sequence of DPV Citrus tristeza virus

Citrus tristeza virus clone P16C minor coat protein (p27) gene, complete cds.

ACC No: AY896550

Dated: 2005-04-17 | Length: 723 | CRC: -1424239811

                !!NA_SEQUENCE 1.0
ID   AY896550   standard; genomic RNA; VRL; 723 BP.
XX
AC   AY896550;
XX
SV   AY896550.1
XX
DT   14-FEB-2005 (Rel. 82, Created)
DT   17-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE   Citrus tristeza virus clone P16C minor coat protein (p27) gene, complete
DE   cds.
XX
KW   .
XX
OS   Citrus tristeza virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC   Closterovirus.
XX
RN   [1]
RP   1-723
RA   Harper S.J., Pearson M.N., Mooney P.A., Dawson T.E.;
RT   "Characterization of trifoliate resistance-breaking isolates of Citrus
RT   tristeza virus";
RL   Unpublished.
XX
RN   [2]
RP   1-723
RA   Harper S.J., Pearson M.N., Mooney P.A., Dawson T.E.;
RT   ;
RL   Submitted (13-JAN-2005) to the EMBL/GenBank/DDBJ databases.
RL   School of Biological Sciences, University of Auckland, 3A Symonds Street,
RL   Auckland, New Zealand
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .723
FT                   /country="New Zealand"
FT                   /db_xref="taxon:12162"
FT                   /mol_type="genomic RNA"
FT                   /organism="Citrus tristeza virus"
FT                   /isolate="NZ-16"
FT                   /specific_host="Citrus aurantifolia"
FT                   /clone="P16C"
FT   gene            1. .723
FT                   /gene="p27"
FT   CDS             1. .723
FT                   /codon_start=1
FT                   /db_xref="UniProt/TrEMBL:Q5EFC6"
FT                   /gene="p27"
FT                   /product="minor coat protein"
FT                   /protein_id="AAW82050.1"
FT                   /translation="MAGYTVLPKTDDKEMDPVSAAVPGKYPDVIEKFVTNRSVDALIES
FT                   VISKLDTNSIYEDSTEKFTGEQLKYVMVTMDTFLLENYKTKTEDLLVHLAMIQKRLCTI
FT                   STSTKTKFRDKGCISYVQGGLRYKLMDKVVFPFIISKFTDRETPNALRKYACTFEELHL
FT                   CTARLRPDLYENKRTTKAGTPHLKGYLSADFLTGSLPGYSEHERGIILRASESMLARRQ
FT                   GYEEATELLNLRDLGKYL"
XX
SQ   Sequence 723 BP; 222 A; 133 C; 166 G; 202 T; 0 other;

 AY896550  Length: 723  April 26, 2005 08:33  Type: N  Check: 8994  ..

       1  atggcaggtt atacagtact tcctaaaact gacgacaaag aaatggatcc
      51  ggtgagtgcc gctgtgcccg gtaaataccc ggacgttatc gaaaaatttg
     101  tgaccaacag gtcagtagac gcgttaatag aaagcgttat tagcaagttg
     151  gatactaatt caatatacga agattccact gaaaaattta ctggtgagca
     201  gctgaagtac gtcatggtta ctatggacac tttcttacta gaaaattaca
     251  aaacgaaaac ggaagatctg ctggttcact tggctatgat tcaaaagagg
     301  ttgtgcacta tatctacgag tactaaaacc aagtttcgtg ataaaggttg
     351  tatcagttat gtacaagggg gtttacgata taagttaatg gataaggtag
     401  tttttccctt tattatatct aagtttactg acagggagac tccaaacgct
     451  ctacgtaagt atgcttgtac gtttgaggag ttacacttgt gcacggctag
     501  gttgagaccc gacttgtatg aaaacaaaag gacgaccaaa gctgggactc
     551  cgcatttaaa gggctactta tcagctgact ttcttacggg ttccctccca
     601  ggatattccg aacatgaacg gggtatcatt cttcgagcgt cagaatctat
     651  gttagctaga cgtcaaggtt atgaggaagc aaccgagctt cttaacttac
     701  gcgatttggg taagtactta tag