Sequence of DPV Tomato leaf curl New Delhi virus
Tomato leaf curl New Delhi virus segment A, complete sequence.
ACC No: AY939926
Dated: 2006-03-02 | Length: 2684 | CRC: 840855817
ID AY939926 standard; circular genomic DNA; VRL; 2684 BP.
XX
AC AY939926;
XX
SV AY939926.1
XX
DT 02-MAR-2006 (Rel. 87, Created)
DT 02-MAR-2006 (Rel. 87, Last updated, Version 1)
XX
DE Tomato leaf curl New Delhi virus segment A, complete sequence.
XX
KW .
XX
OS Tomato leaf curl New Delhi virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2684
RA Rouhibakhsh A., Malathi V.G.;
RT "Complete DNA A sequence of Tomato leaf curl New delhi virus causing severe
RT leaf distortion mosaic in Luffa cylindrica in northern India";
RL Unpublished.
XX
RN [2]
RP 1-2684
RA Rouhibakhsh A., Malathi V.G.;
RT ;
RL Submitted (20-FEB-2005) to the EMBL/GenBank/DDBJ databases.
RL Advanced Center for Plant Virology, Division of Plant Pathology, Indian
RL Agricultural Research Institute, Pusa Road, New Delhi, Delhi 110012, India
XX
FH Key Location/Qualifiers
FH
FT source 1. .2684
FT /organism="Tomato leaf curl New Delhi virus"
FT /segment="A"
FT /specific_host="Luffa cylindrica"
FT /mol_type="genomic DNA"
FT /country="India"
FT /isolation_source="northern India"
FT /note="transmitted by Whitefly; causes severe leaf
FT distortion mosaic"
FT /db_xref="taxon:223347"
FT gene 41. .403
FT /gene="AV2"
FT CDS 41. .403
FT /codon_start=1
FT /gene="AV2"
FT /product="pre-coat protein"
FT /note="has role in movement and symptom production"
FT /protein_id="AAY44734.1"
FT /translation="MKFTLHGLFSDPLLHEFPESVHGLRCMLAVKYLQEIEKNYSPDTV
FT GYDLVRDLILVLRAKNYGEATSRYHHFNARIEGTPTSQLRQPLWSSCSCPHCPRHKSKG
FT LDQQADEQKTQNVQNV"
FT gene 225. .995
FT /gene="AV1"
FT CDS 225. .995
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="AAY44733.1"
FT /translation="MAKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWT
FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR
FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEP
FT STATVKNMHRDRYQVLRKWHATVTGGTYASKEQALVRKFVRVNNYVVYNQQEAGKYENH
FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT gene complement(255. .617)
FT /gene="AC5"
FT CDS complement(255. .617)
FT /codon_start=1
FT /gene="AC5"
FT /product="AC5"
FT /protein_id="AAY44736.1"
FT /translation="MVFCLDVFIHPYLPQHIDRFHTKSLPHAMCESSSSSNITNAHDFA
FT NMRDIVPRFKRLHLTRAFTAPWHVGTPIHSVHSGFSVHRPVGPGLCFCDAGNGDNCTSS
FT IGAVEVETSAYLRCGR"
FT gene complement(992. .1402)
FT /gene="AC3"
FT CDS complement(992. .1402)
FT /codon_start=1
FT /gene="AC3"
FT /product="AC3"
FT /note="replication enhancer protein"
FT /protein_id="AAY44739.1"
FT /translation="MITDSRTGEYITADRAESGVYTWEIRNPLYFKILKHDSRPFLTQH
FT DIIKIQIQFNHNLRKALGLHKCFLTFKIWTGLRPQIGIFLRVFKTQVLRYLDMLGVIGI
FT YNVIRAVYHVLDNVLEGTIDVWTSYDIKLDIY"
FT gene complement(1122. .1541)
FT /gene="AC2"
FT CDS complement(1122. .1541)
FT /codon_start=1
FT /gene="AC2"
FT /product="AC2"
FT /note="transcription activator protein"
FT /protein_id="AAY44737.1"
FT /translation="MQSSSHSKNHSIPVAKTSLPQKKKKSIRRRRVDLTCGCTYYISIN
FT CHDHGFTHRGVHHCGSSREWRIYLGNSKSPVFQNFETRQQALPNTARHHQDSNTIQPQP
FT AESPGTSQVFSNFQNLDGLTPSDWDFLESLQNPGP"
FT gene complement(1444. .2529)
FT /gene="AC1"
FT CDS complement(1444. .2529)
FT /codon_start=1
FT /gene="AC1"
FT /product="AC1"
FT /note="replication initiation protein"
FT /protein_id="AAY44735.1"
FT /translation="MAPPRRFRIDAKNYFLTYPKCSLTKEEALSQLQTLETPTAKKFIK
FT ICRELHEDGSPHIHVLIQFEGKFQCKNNRFFDLVSPSRSAHFHPNIQGAKSASDVKAYI
FT DKDGDVLEWGVFQIDGRSARGGQQTANDAYAKAINTGNKEDALKVLKELAPKDYVLQFH
FT NLISNLDRIFQPRSEVYVSPFSISSFDRVPPELVDWASVNVVCAAARPFRPISIVIEGD
FT SRTGKTMWARCLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNAALKQWAIKNAVFITLEEPL
FT YSGRENIAPTEEEEEHSQEAS"
FT gene complement(2123. .2580)
FT /gene="AC4"
FT CDS complement(2196. .2372)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4"
FT /protein_id="AAY44738.1"
FT /translation="MGLRISMFSSNSKGNSSARITDSSTWFPQVGQHISIRTFRELNQR
FT QMSKHTSTKMETF"
XX
SQ Sequence 2684 BP; 725 A; 583 C; 595 G; 781 T; 0 other;
ay939926 Length: 2684 02-MAR-2006 Type: N Check: 1250 ..
1 accgaatggc cgcgcaaatt tttaggtggg ccctcaacca atgaaattca
51 cgctacatgg cttatttagt gatccattat tgcacgaatt tccagaaagc
101 gttcatggtc taaggtgcat gctagctgta aaatatctcc aagagataga
151 gaagaactat tccccagaca cagtcggcta cgatcttgtc cgagatctca
201 ttcttgttct ccgagcaaag aactatggcg aagcgaccag cagatatcat
251 catttcaacg cccgcatcga aggtacgccg acgtctcaac ttcgacagcc
301 cctatggagc tcgtgcagtt gtccccattg cccgcgtcac aaaagcaaag
351 gcctggacca acaggccgat gaacagaaaa cccagaatgt acagaatgta
401 taggagtccc gacgtgccaa ggggctgtga aggcccttgt aaggtgcagt
451 cttttgaatc taggcacgat gtctctcata ttggcaaagt catgtgcgtt
501 agtgatgtta ctcgaggaac tggactcaca catcgcgtgg ggaagcgatt
551 ttgtgtgaaa tctgtctatg tgctggggaa gatatggatg gatgaaaaca
601 tcaagacaaa aaaccatact aacagtgtca tgtttttttt agttcgtgac
651 cgtcgtccta caggatcccc tcaagatttt ggggaagttt ttaacatgtt
701 tgacaatgaa ccgagcacag caacggtgaa gaacatgcat cgtgatcgtt
751 atcaagtctt acggaagtgg catgcgactg tgacgggagg aacatatgca
801 tctaaggagc aagcattagt taggaagttt gttagggtta ataattatgt
851 tgtttataat caacaagagg ccggcaagta tgagaatcat actgaaaacg
901 cattaatgtt gtatatggcc tgtactcacg catcaaatcc tgtatatgct
951 actttgaaaa tccggatcta cttttatgat tcggtcacaa attaataaat
1001 atccagtttt atatcatacg aagtccatac atcaattgtt ccctccaata
1051 cattatccaa tacatgataa actgctctta ttacattata aattcctatg
1101 acacctaaca tatccaggta cctaaggacc tgggttttga agactctcaa
1151 gaaaatccca atctgagggc gtaagcccgt ccagattttg aaagttagaa
1201 aacacttgtg aagtcccagg gctttccgca ggttgtggtt gaattgtatt
1251 tgaatcttga tgatgtcgtg ctgtgttagg aagggcctgc tgtcgtgttt
1301 caaaattttg aaatacaggg gatttcgaat ttcccaggta tatacgccac
1351 tctctgctcg atccgcagtg atgtactccc ctgtgcgtga atccgtgatc
1401 atggcagttg atcgatatat aatacgtaca cccacacgtc agatcaactc
1451 gcctcctgcg aatgctcttc ttcttcttct gtgggagcga tgttttcgcg
1501 accggaatag agtggttctt cgagtgtgat gaagactgca ttcttgattg
1551 cccactgctt cagtgctgca tttttttctt cgtccagata ttccttatag
1601 ctgctgtttg gacctttatt gcacaggaag atagtgggaa taccaccttt
1651 aatcatgact ggctttccgt acttcgtgtt gctttgccag tcacgctggg
1701 cccccatgaa ttctttaaag tgctttagat agtggggatc aacgtcatca
1751 atgacgttgt accaggcatc attgctatac acctttgggc tcagatcaag
1801 atgtccacat aagtaattgt ggggtcctaa gcaacgagcc cacattgttt
1851 tccctgttct actatccccc tctatgacta tgcttatggg cctaaaaggc
1901 cgcgcagcgg cacacacaac attgacactg gcccaatcga caagttctgg
1951 aggaactctg tcgaaggatg aaattgaaaa tggagaaacg taaacctcag
2001 aacgaggttg aaaaatgcga tctaaattgc ttattaaatt gtgaaactgc
2051 agaacataat cctttggggc taattccttt aatactttta atgcatcttc
2101 tttattcccc gtgttaatcg ccttagcata tgcgtcgttg gctgtctgct
2151 gaccaccacg agcagatcgt ccatcgatct ggaaaacacc ccattctaga
2201 acgtctccat ctttgtcgat gtatgctttg acatctgacg ctgatttagc
2251 tccctgaatg ttcggatgga aatgtgctga ccgacttggg gaaaccaagt
2301 cgaagaatct gttattcttg cactggaatt tcccttcgaa ttggatgaga
2351 acatggatat gcggagaccc atcctcgtga agctctctac agatcttgat
2401 gaatttcttc gcagttgggg tttctagggt ttgcaattgg gaaagtgcct
2451 cttctttagt tagagagcac tttggatatg tgaggaaata gtttttggca
2501 tctattctga aacgacgtgg cggagccata aaacttgtcg ttttgattcg
2551 gcgtccctca acttcctcta tgtaattggc gtctggcgtc ccatatatag
2601 gtaggacgct aaatggcaga attgtaattt tgaaaagaaa attactttaa
2651 ttcaaaatcc tcatagcggc cattcgttaa tatt