Sequence of DPV Citrus tristeza virus
Citrus tristeza virus isolate 425 p6, Hsp70h, p61, CPm, CP, p18, p13, p20, and p23 genes, complete cds.
ACC No: AY995564
Dated: 2005-04-26 | Length: 7365 | CRC: -2132986392
!!NA_SEQUENCE 1.0 ID AY995564 standard; genomic RNA; VRL; 7365 BP. XX AC AY995564; XX SV AY995564.1 XX DT 26-APR-2005 (Rel. 83, Created) DT 26-APR-2005 (Rel. 83, Last updated, Version 1) XX DE Citrus tristeza virus isolate 425 p6, Hsp70h, p61, CPm, CP, p18, p13, p20, DE and p23 genes, complete cds. XX KW . XX OS Citrus tristeza virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae; OC Closterovirus. XX RN [1] RP 1-7365 RA Roy G., Yokomi R.K., Ullman D.E.; RT "Amino acid sequence variations associated with aphid transmissibility of RT Citrus tristeza virus"; RL Unpublished. XX RN [2] RP 1-7365 RA Roy G., Yokomi R.K., Ullman D.E.; RT ; RL Submitted (31-MAR-2005) to the EMBL/GenBank/DDBJ databases. RL Plant Pathology, University of California at Davis, One Shields Avenue, RL Davis, CA 95616, USA XX FH Key Location/Qualifiers FH FT source 1. .7365 FT /country="USA:Tulare county, California" FT /db_xref="taxon:12162" FT /mol_type="genomic RNA" FT /organism="Citrus tristeza virus" FT /isolate="425" FT /isolation_source="aphid transmission during 1999 from a FT naturally infected field tree" FT CDS 12. .167 FT /codon_start=1 FT /product="p6" FT /protein_id="AAY15704.1" FT /translation="MDCVIQGFLTFLVGIAVFSAFAGLIIIVITIYRCTTKPVRNTSPY FT GTHATV" FT CDS 173. .1957 FT /codon_start=1 FT /note="p65; similar to heat shock protein 70" FT /product="Hsp70h" FT /protein_id="AAY15705.1" FT /translation="MVLLGLDFGTTFSTVAMATSSELVILKQSNSSYIPTCLFLHADPN FT SVSYGYDAEYLAASGEPGSFYKDLKRWVGCTAKNYQTYLHKLSPSYKVTVEEFGTKSVP FT VPYLSPLNNDLGLSVALPLLIASYAKSILSDAERVFNVSCTGVICSVPAGYNTLQRAFT FT QQSISMSGYSCVYIINEPSAAAYSTLPKLSSADKYLAVYDFGGGTFDVSIVSVRLPTFA FT VRSSGGDMNLGGRDIDKKLSDKIYEMADFIPQKELNVSSLKEALSLQTDPVKYTVTHHG FT MSETISIDQTALREIASVFINRTIDILTQVKVKSSMPESQSLKLVVVGGSSYLPGLLDT FT LATVPFVSGIVPVEDARTAVARGCALYSECLDGRSKALLIDCITHHLSVTTFSADSVVV FT AAAGSPIPFEGEQKLTLRKCVSTSNYQARMFEGDYEKVFRNERIYAASVSLFTLGVNWR FT VPNDVEMTLVTKVDSMGKVEFYLKGPSGELVNVQGTSRYDYTGMPHPTRNLVKLSDYNV FT NSAALVLALTLTREKREKFLLRTLFDTLLADLRRTASLSEYSKKYPITRNDIDVVSSRM FT GIVVSKVLRGSDLERIPL" FT CDS 1881. .3488 FT /codon_start=1 FT /product="p61" FT /protein_id="AAY15706.1" FT /translation="MSSHHVWGSLFRKFYGEAIWKEYLSESTRSFDERNVSLDHTLSSG FT VVVRRQSLLNAPQGTFENELALLYNSVVINDFVELTGMPLKSLMTGIEDRKVPDELISV FT DPHEVGCRFTLNDVESYLISRGEDSADVTAVEHSWCLSNSCGRLLSSTEIDAYKTLVFT FT KNFDSNVSGVTTKLETYLSYCISLYKKHCMKDDDYFNLITPMFNCLVKVLASLGLFYEK FT HTDNPLLTGMLIEFCLENKVYYSTFKVNLDNVRLFKSKVLPVVLTVWDISEPDDPVDER FT VLIPFDPTDFVLDLPKLNIHDTMVVVGNQIRQLEYVVESDALDDLSQHVDIRLAADNPD FT LRVDLRWAGMFVYYGVYRCAIDRVVERPTLFRLPQKLLSQDDGESCSLRMSAVEALFNL FT VQKVNRDINVRRQFMGRHSKVALRLYRNLGLRFPPISSVRLPVHHGYLYVDFYKRVPDD FT AVTADELESLRQLRSSVDVMCKDRVSITPPPFNRLRRGSSRTFRGRGARGASSRHMSRD FT VATSGFNLPYHGRLYNTS" FT CDS 3463. .4185 FT /codon_start=1 FT /note="minor capsid protein; p27" FT /product="CPm" FT /protein_id="AAY15707.1" FT /translation="MAGYTTLPNTDDKEMNPVSAAVPGKYPDVIEKFVANRSVDALIEG FT VISKLDTNSIYEDSTEKFTGEHLKYVMVTMDAFLLENYKTKTEDLLVHLAMIQKRLCTT FT STSTKTKFRDKGCISYVQGGSRYKLMDKVVFPFIISKFTDRETPNALRKYACTFEELHL FT CMARLRPDLYENKRTTKAGTPHLKGYLSADFLSGSLPGYSEHERGIILRASESMLARRQ FT GYEEATELLNLRDLGKYL" FT CDS 4282. .4953 FT /codon_start=1 FT /note="capsid protein; p25" FT /product="CP" FT /protein_id="AAY15708.1" FT /translation="MDDETKKLKNKNKETKEGDDVVAAESSFGSVNLHIDPTLITMNDV FT RQLSTQQNAALNRDLFLALKGKYPNLPDKDKDFHIAMMLYRLAVKSSSLQSDDDTTGIT FT YTREGVEVDLSDKLWTDIVYNSKGIGNRTNALRVWGRTNDALYLAFCRQNRNLSYGGRP FT LDAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGADEVVVTNVRQLGKFNT FT R" FT CDS 4919. .5422 FT /codon_start=1 FT /product="p18" FT /protein_id="AAY15709.1" FT /translation="MSGSLGNLTHVDLLRSDSRFLSGWWSFIVNVGDIIVRFALHVPNE FT DMLNSFSAISNCTIIADGSALLKDNTVVDRLESMNPLAYLLKLAKTTTTICFTMSNKVL FT FGTTKSEPLSCLAITSDRVLFKVIMGANVDDSRCGCSIWFYNNGTFQNGLTRCNNLVTL FT FSAT" FT CDS 5456. .5815 FT /codon_start=1 FT /product="p13" FT /protein_id="AAY15710.1" FT /translation="MSIRRVWLKVIAVITVLWYGKEPSISEGYNALMNDDFKFIDTHFS FT NVSYAKKCYDLANFDLDFLRIVIIPLSGGTANESRSDRTNVSEIVESHVSDRDRMHILL FT RNKRIQIPSLLPCDN" FT CDS 5891. .6439 FT /codon_start=1 FT /product="p20" FT /protein_id="AAY15711.1" FT /translation="MRAYFSVNDYISLLAKVGSVVERLCDPSVTLTEVMDEINDFNSFL FT ALVHSMKSDMNGDHQDGHHEMGEHKSRLLCNIEAKLRVLLDIIRRRFTREKLLCTSATD FT VVGFFVVRYMSSSHTSFETVMRTELKLVVKAVLSELSRTHKLDFSERAFAAYGILLQKG FT TVATVCGQFDINLVSPSCV" FT CDS 6522. .7151 FT /codon_start=1 FT /product="p23" FT /protein_id="AAY15712.1" FT /translation="MDDTSGQTFVSVNLSDESNTASTKVENVKSEADRLEFLRKMNPFI FT IDALVRKTNYQGARFRARIIGVCVDCGRKHDKALKTERKCKVNNTQSQNEVAHMLMHDP FT VKYLNKRKARAFSNAEMFAIELVLYTKERQLAVDLAAEREKTRLARRHPIRSPEETPEH FT YKFGMTAKAMLPDINAVDVGDNEETSSEYPVSLSVSGGVLREHHFI" XX SQ Sequence 7365 BP; 2001 A; 1381 C; 1785 G; 2198 T; 0 other; AY995564 Length: 7365 May 3, 2005 09:01 Type: N Check: 3358 .. 1 acggggtttc aatggactgt gtgattcaag gatttttgac ttttctggtt 51 ggtatagctg ttttttcggc ctttgccgga ctgattatca ttgttataac 101 gatttatcgg tgcacgacta agcctgttag gaacacttct ccttacggca 151 ctcacgccac tgtctaagcg gtatggtact tctgggttta gactttggta 201 ccacgttttc gacggtggct atggctacat cctctgagtt agttatactc 251 aaacaatcta attcatcgta catacctaca tgtttgtttt tgcatgcaga 301 ccctaacagc gtgtcttatg gttacgatgc ggaatattta gcggcttctg 351 gggagcctgg ttctttttac aaagatttga aacggtgggt tggttgcact 401 gcgaagaact accaaaccta cttacacaaa ctatcgcctt cctataaggt 451 gacggtggaa gagtttggaa ctaagagtgt gccagtccca tatttgtcac 501 ctctgaataa cgatttggga ctcagtgtcg ctttaccttt actaatcgct 551 tcgtatgcca aatccatttt gtcggatgcg gaacgagtgt tcaatgtaag 601 ctgcactgga gttatatgtt cggtacccgc tggttataac acgttgcaac 651 gagcttttac gcagcagagt atatcgatgt cgggttactc ttgcgtgtac 701 attattaacg aaccttcagc agccgcgtac tccactttac ctaagttgag 751 ttcggcagat aaatatttag ccgtttacga cttcggcggt gggactttcg 801 acgtctctat agttagcgtc agattgccta cgttcgccgt taggagttcg 851 ggtggtgaca tgaatttagg tggtagagat atcgacaaaa agttatctga 901 taaaatatac gaaatggcag attttatacc gcaaaaggaa ttgaacgttt 951 ctagtttaaa ggaagcttta tctcttcaaa ctgatccggt caaatatact 1001 gtaactcatc acggaatgag tgagacgata tcaattgatc aaacggcgtt 1051 gagggagata gcttcggtgt tcataaatcg aacgatagat atacttacgc 1101 aagttaaagt taagtctagt atgcccgaat cgcaaagttt aaagttagtg 1151 gtagtcggtg gaagctcgta cctaccagga ttgttggata ctttggcaac 1201 cgtgcctttc gtgtctggga tagtaccagt ggaagacgca agaaccgcgg 1251 tcgctagagg gtgtgcttta tatagtgagt gcttagatgg taggtccaag 1301 gccctactaa tagattgtat tacacatcat ttgtcggtta cgacgtttag 1351 cgcggactcg gtcgttgtcg cagcggccgg tagtccaatt ccttttgaag 1401 gagaacaaaa actcacgtta cgcaaatgcg ttagcacgtc taactatcaa 1451 gcaagaatgt tcgaaggaga ttacgaaaag gttttccgaa atgaacgtat 1501 ctacgcagct tcagtatcgt tgtttacttt aggagttaat tggcgtgtgc 1551 ctaacgacgt tgagatgact ctcgtgacca aagtggactc aatgggtaaa 1601 gtggaatttt accttaaagg tccatctggt gaactagtca acgtgcaagg 1651 tacttcgcgt tacgattata ctggtatgcc tcaccccact agaaatttgg 1701 tgaagcttag cgattacaat gtaaactccg ccgctttagt tttagctttg 1751 acattaactc gcgaaaaacg agaaaagttt cttttgcgga cattatttga 1801 cactttacta gcagatttgc gaaggacagc aagtttaagc gagtactcaa 1851 agaagtaccc gatcactcga aacgatatcg atgtcgtctc atcacgtatg 1901 gggatcgttg tttcgaaagt tttacgggga agcgatttgg aaagaatacc 1951 tctctgaatc aactcgaagt tttgatgaaa gaaacgtgtc gttggaccac 2001 actttgagtt cgggtgtggt cgtccgtagg cagagtcttt tgaatgcgcc 2051 tcaagggact tttgagaacg agttagcgct attgtataat tcggtggtga 2101 ttaacgattt tgttgagttg actggtatgc cattgaagtc tttgatgaca 2151 ggtatcgagg accgtaaggt gcctgacgaa ttaatatccg ttgacccgca 2201 cgaagtcgga tgtagattca cgttaaacga cgtggaatca tatctaataa 2251 gcaggggtga ggattccgct gatgtaacgg cggtcgagca ttcgtggtgt 2301 ttgagtaact cttgtggtag actattaagt tcgaccgaga tagatgctta 2351 caaaaccttg gtgtttacca agaattttga tagtaatgta tctggagtga 2401 ctactaagtt agagacttat ctatcgtact gtatatcttt gtacaagaaa 2451 cactgcatga aagacgatga ttattttaat cttatcacac ctatgtttaa 2501 ttgtttggtg aaagtgctgg cgtcacttgg tttgttttat gagaaacata 2551 ctgacaatcc gctactgacc ggaatgctta tagagttttg cctagaaaat 2601 aaggtgtatt actctacttt taaagtaaat ctagacaacg ttagattgtt 2651 taagtctaaa gtgttgcctg tggtgttaac ggtttgggat atatctgagc 2701 ctgatgaccc agtggatgaa agggtgctaa ttcctttcga tcctactgat 2751 ttcgtgctcg atttacctaa attgaatata cacgacacaa tggtggtggt 2801 gggtaatcaa atcagacagt tagagtacgt agtcgagagc gatgctttag 2851 acgatttatc tcaacacgtt gacatacgtt tagcagcgga caaccccgat 2901 ctacgcgttg atctgcgttg ggcagggatg tttgtctact acggtgttta 2951 tcggtgtgct attgatagag tggtagaacg accgacgtta tttagattgc 3001 cgcagaagtt attgagtcag gatgatggcg aatcgtgctc attgcgcatg 3051 agtgccgtcg aagctttatt taatctagtg caaaaggtga acagggacat 3101 aaacgttaga cgtcagttca tgggacgtca cagtaaagtg gctttgcgac 3151 tgtatcgcaa cttaggtttg aggtttccac cgatctcttc agttaggtta 3201 ccggttcatc acggttactt atacgtcgat ttttacaaaa gagtacctga 3251 cgatgctgtt actgccgacg aactcgaaag tttacgtcaa ttacgttcgt 3301 ccgtggacgt tatgtgtaag gacagggtgt caatcacacc tccaccattc 3351 aatcgactta gaagaggttc ttctagaaca tttagaggtc gaggcgcacg 3401 cggtgcgagc tcgcgtcata tgagcagaga cgtggcaact tccggtttta 3451 atttacctta tcatggcagg ttatacaaca cttcctaata ccgatgacaa 3501 agaaatgaat ccggtgagtg ccgctgtacc cggtaagtat ccggatgtca 3551 ttgaaaaatt tgtggccaac aggtccgtag acgcgttaat agaaggcgtc 3601 ataagtaagt tggataccaa ttcaatatac gaagattcca ctgaaaaatt 3651 tactggtgaa cacttgaaat acgttatggt tactatggat gctttcttat 3701 tagaaaacta caagacgaaa acggaagatc tgttggttca cttagctatg 3751 atccaaaaga ggttgtgcac tacatccacg agcactaaaa ccaagttccg 3801 cgataaaggt tgtattagtt acgtgcaagg gggttcgcgg tataagttaa 3851 tggataaagt agtttttcct ttcattatat cgaaatttac cgacagggag 3901 actccgaacg ctctacgtaa gtatgcttgc actttcgagg agttacactt 3951 gtgtatggct aggttgagac ccgacttata cgaaaataaa aggacgacta 4001 aagccgggac tccacattta aagggctatt tatcagccga ctttctttcg 4051 ggttctctcc cagggtactc cgaacatgaa cgaggcatca ttcttcgagc 4101 gtctgagtct atgttagcta gacgtcaagg ttacgaggag gcaaccgagc 4151 ttcttaacct acgtgatttg ggtaagtact tgtagttggt ttggggacgg 4201 taatattatt ataccatccc ttgagcgctg ctttaagggt cgttaattga 4251 cgactcttga tatatttact aggtttgaat tatggacgac gaaacaaaga 4301 aattgaagaa caaaaacaag gaaacgaaag aaggcgacga tgttgttgct 4351 gctgagtctt ctttcggttc cgtaaactta cacatcgatc cgactctgat 4401 aacgatgaac gatgtgcgtc agttgagtac tcaacagaat gctgctttga 4451 acagggactt atttcttgct ctgaaaggga agtatcctaa cttgcctgac 4501 aaagataagg actttcacat agctatgatg ttataccgtt tagcggttaa 4551 gagttcatca ttgcaaagtg atgatgacac cacgggcata acgtacactc 4601 gggagggtgt tgaagtagat ttgtctgaca aactttggac cgacatcgtg 4651 tataattcta agggtattgg taaccgaact aacgcccttc gagtctgggg 4701 tagaactaac gatgctcttt acttagcctt ttgtagacag aaccgcaatt 4751 tgagttatgg cggacgtccg ctagatgcag ggattccggc tgggtatcat 4801 tatttgtgtg cagatttctt gaccggagct ggcttgactg atttagaatg 4851 tgctgtgtac atacaagcta aagaacaatt gttgaaaaag cgaggggctg 4901 atgaggttgt agttactaat gtcaggcagc ttgggaaatt taacacacgt 4951 tgatctattg cgttccgatt cccggtttct atcgggatgg tggagtttca 5001 tcgtgaacgt gggtgatata attgtccggt tcgcgttaca cgttcctaat 5051 gaagatatgc tgaatagttt ttcagctata tcgaattgta cgattatagc 5101 ggatggtagt gctttactaa aggacaatac tgtggttgac cgtttagaaa 5151 gcatgaatcc tttggcttat ttgttaaaat tagcgaaaac gactactact 5201 atttgtttta ctatgtccaa taaggttctt tttggtacta ccaaatccga 5251 accacttagt tgtttagcca tcacgtcgga tcgagtttta ttcaaagtta 5301 ttatgggcgc taacgttgat gattctcgat gcggctgcag tatttggttt 5351 tacaacaatg gtacatttca aaacggattg acccgttgta ataatctcgt 5401 cactttgttt agcgcgactt agacacgaag tgaccgttcg gatttaattg 5451 ctgcgatgag tattcgacgc gtgtggttaa aggttatagc tgtaattaca 5501 gtgttgtggt acggtaagga accttctatt agtgaaggtt acaatgctct 5551 tatgaatgac gactttaaat ttatcgatac gcatttttct aacgtttctt 5601 atgctaagaa atgttacgat ttggctaatt tcgatttaga ttttttgcgc 5651 atcgttatca ttcctttgag tggtggcacg gcgaatgaat cgcgttctga 5701 tcgcactaac gtttcagaga ttgtcgaatc gcatgtaagc gaccgagaca 5751 gaatgcacat cttgttgcgt aataagcgga tccagattcc ttcgctctta 5801 ccttgcgata actagagtct actcagtagt acgtctacta gtataacgta 5851 ttaaacactt tagtgaggag ttttgtttga atcaaacaat atgcgagctt 5901 actttagtgt taacgattac ataagccttt tggctaaggt tggttcagtt 5951 gtggaacgtt tgtgcgatcc cagcgtaact ctcacggaag tgatggacga 6001 aattaatgat tttaactcgt ttctcgcttt ggtgcactct atgaagtcgg 6051 acatgaacgg cgatcatcag gatggtcacc atgagatggg tgaacataaa 6101 tctcggttgt tgtgcaatat agaggcgaaa ctgcgagtgc ttctcgacat 6151 cataagacgt cggtttactc gcgaaaaact gctctgtacc agtgctacag 6201 atgttgtggg cttcttcgtc gtgaggtaca tgagttctag tcacactagt 6251 ttcgaaaccg taatgcgaac ggaactgaag ttggtggtta aagctgtgct 6301 gtcggaattg tcccgcacgc ataaactaga ttttagcgag cgagcctttg 6351 cggcttacgg tatccttttg cagaagggca ccgtggcaac cgtttgcggt 6401 cagtttgaca ttaatttagt ttctccgtct tgcgtgtagg ttaatacgct 6451 tctcagaacg tatggttgta ttaactaact ttaattcgaa catatttatt 6501 gtttaaagtc tgtgagttac gatggatgat actagcggac aaactttcgt 6551 ttctgtgaac ctttctgacg aaagcaacac ggcaagcact aaagttgaaa 6601 acgtaaaatc ggaagcggat cgcttggagt ttttacgtaa aatgaatccc 6651 tttattattg acgctctggt gcggaaaacc aattatcagg gtgctcgctt 6701 tcgcgcaaga ataataggag tgtgcgtgga ttgtggtaga aaacacgaca 6751 aggcgctcaa gactgaacgt aagtgtaagg tcaacaatac gcaatctcag 6801 aacgaggtgg cgcatatgtt gatgcacgat cccgttaagt atttgaacaa 6851 aagaaaggct agagcctttt ctaacgcaga gatgtttgcg attgaattgg 6901 ttttgtacac caaggaaagg caattggcgg tcgatttagc cgctgaaagg 6951 gagaagacga gactggctcg tagacaccca atacgttctc cggaagaaac 7001 tccggaacat tataaattcg gtatgactgc taaggcaatg ttaccggaca 7051 tcaacgccgt agacgttggt gataacgagg aaacttcgtc ggagtaccca 7101 gtgagtctga gtgtttctgg cggagttctc cgtgaacacc acttcatctg 7151 attgaagtgg acggaataag ttccttgcgg aactttaagt cgggttggta 7201 aaaacccttt atgatggtga tgtatcacta gacaataacc ggatgggtaa 7251 agtctttaaa atgatcgagg ggaaaattaa ccgtatcctc tcgttggtct 7301 aagctcccac agagtggtag tggtctcaag tgaggcttaa cgtatgcgtg 7351 aaccaaagaa gttct