Sequence of DPV Citrus tristeza virus
Citrus tristeza virus isolate 81P p6, Hsp70h, p61, CPm, CP, p18, p13, p20, and p23 genes, complete cds.
ACC No: AY995567
Dated: 2005-04-26 | Length: 7368 | CRC: -560703445
!!NA_SEQUENCE 1.0 ID AY995567 standard; genomic RNA; VRL; 7368 BP. XX AC AY995567; XX SV AY995567.1 XX DT 26-APR-2005 (Rel. 83, Created) DT 26-APR-2005 (Rel. 83, Last updated, Version 1) XX DE Citrus tristeza virus isolate 81P p6, Hsp70h, p61, CPm, CP, p18, p13, p20, DE and p23 genes, complete cds. XX KW . XX OS Citrus tristeza virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae; OC Closterovirus. XX RN [1] RP 1-7368 RA Roy G., Yokomi R.K., Ullman D.E.; RT "Amino acid sequence variations associated with aphid transmissibility of RT Citrus tristeza virus"; RL Unpublished. XX RN [2] RP 1-7368 RA Roy G., Yokomi R.K., Ullman D.E.; RT ; RL Submitted (31-MAR-2005) to the EMBL/GenBank/DDBJ databases. RL Plant Pathology, University of California at Davis, One Shields Avenue, RL Davis, CA 95616, USA XX FH Key Location/Qualifiers FH FT source 1. .7368 FT /country="USA:near McFarland, California" FT /db_xref="taxon:12162" FT /mol_type="genomic RNA" FT /organism="Citrus tristeza virus" FT /isolate="81P" FT /isolation_source="aphid transmission during 2001 from a FT naturally infected field tree which was a Fukumoto navel on FT Troyer rootstock" FT CDS 12. .167 FT /codon_start=1 FT /product="p6" FT /protein_id="AAY15731.1" FT /translation="MDCVIQGFLTFLVGIAVFSAFAGLIIIVITIYRCTTKPVRNTSSY FT GTHATV" FT CDS 173. .1957 FT /codon_start=1 FT /note="p65; similar to heat shock protein 70" FT /product="Hsp70h" FT /protein_id="AAY15732.1" FT /translation="MVLLGLDFGTTFSTVAMATSSELVILKQSNSSYIPTCLFLHADPN FT SVSYGYDAEYLAASGEPGSFYKDLKRWVGCTAKNYQTYLHKLSPSYKVTVEEFGTKSVP FT VPYLSPLNNDLGLNVALPLLIASYAKSILSDAERVFNVSCTGVICSVPAGYNTLQRAFT FT QQSISMSGYSCVYIINEPSAAAYSTLPKLSSADKYLAVYDFGGGTFDVSVVSVRLPTFA FT VRSSGGDMNLGGRDIDKKLSDKIYEMADFIPQKELNVSSLKEALSLQTDPVKYTVTHHG FT MSETISIDQTALREIASVFINRTIDILTQVKVKSSMPESQSLKLVVVGGSSYLPGLLDT FT LATVPFVSGIVPVEDARTAVARGCALYSECLDGRSKALLIDCITHHLSVTTFSADSVVV FT AAAGSPIPFEGERKLTLRKCVSTSNYQARMFEGDYEKVFRNERIYAASVSLFTLGVNWR FT VPKDVEMTLVTKVDSMGKVEFYLKGPSGELVNVQGTSHYDYTGMPHPTRNLVKLSDYNV FT NSAALVLALTLTREKREKFLLRTLFDTLLADLRRTASLSEYSKKYPITRNDIDVVSSRM FT GIVVSKVLRGSDLERIPL" FT CDS 1881. .3488 FT /codon_start=1 FT /product="p61" FT /protein_id="AAY15733.1" FT /translation="MSSHHVWGSLFRKFYGEAIWKEYLSESTRSFDERNVSLDHTLSSG FT VVVRRQSLLNAPQGTFENELALLYNSVVINDFVELTGMPLKSLMTGIEDRKVPDELISV FT DPHEVGCRFTLNDVESYLISRGEDSADVTAVEHSWCLSNSCGRLLSSTEIDAYKTLVFT FT KNFDSNVSGVTTKLETYLSYCISLYKKHCMKDDDYFNLITPMFNCLVKVLASLGLFYEK FT HTDNPLLTGMLIEFCLENKVYYSTFKVNLDNVRLFKSKVLPVVLTVWDISEPDDPVDER FT VLIPFDPTDFVLDLPKLNIHDTMVVVGNQIRQLEYVVESDALDDLSQHVDIRLAADNPD FT LRVDLRWAGMFVYYGVYRCAIDRVVERPTLFRLPQKLLSQDDGESCSLRMSAVEALFNL FT VQKVNRDINVRRQFMGRHSKVALRLYRNLGLRFPPISSVRLPVHHGYLYVDFYKRVPDD FT AVTADELESLRQLRSSVDVMCKDRVSITPPPFNRLRRGSSRTFRGRGARGASSRHMSRD FT VATSGFNLPYHGRLYNTS" FT CDS 3463. .4185 FT /codon_start=1 FT /note="minor capsid protein; p27" FT /product="CPm" FT /protein_id="AAY15734.1" FT /translation="MAGYTTLPNTDDKEMNPVSAAVPGKYPDVIEKFVANRSVDALIEG FT VISKLDTNSIYEDSTEKFTGEHLKYVMVTMDAFLLENYKTKTEDLLVHLAMIQKRLCTT FT STSTKTKFRDKGCISYVQGGSRYKLMDKVVFPFIISKFTDRETPNALRKYACTFEELHL FT CMARLRPDLYENKRTTKAGTPHLKGYLSADFLSGSLPGYSEHERGIILRASESMLARRQ FT GYEEATELLNLRDLGKYL" FT CDS 4285. .4956 FT /codon_start=1 FT /note="capsid protein; p25" FT /product="CP" FT /protein_id="AAY15735.1" FT /translation="MDDETKKLKNKNKETKEGDDVVAAESSFGSVNLHIDPTLITMNDV FT RQLSTQQNAALNRDLFLALKGKYPNLPDKDKDFHIAMMLYRLAVKSSSLQSDDDTTGIT FT YTREGVEVDLSDKLWTDIVYNSKGIGNRTNALRVWGRTNDALYLAFCRQNRNLSYGGRP FT LDAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGADEVVVTNVRQLGKFNT FT R" FT CDS 4922. .5425 FT /codon_start=1 FT /product="p18" FT /protein_id="AAY15736.1" FT /translation="MSGSLGNLTHVDLLRSDSRFLSGWWSFIVNVGDIIVRFALHVPNE FT DMLNSFSAISNCTIIADGSALLKDNTVVDRLESMNPLAYLLKLAKTTTTICFTMSNKVL FT FGTTKSEPLSCLAITSDRVLFKVIMGANVDDSRCGCSIWFYNNGTFQNGLTRCNNLVTL FT FSAT" FT CDS 5459. .5818 FT /codon_start=1 FT /product="p13" FT /protein_id="AAY15737.1" FT /translation="MSIRRVWLKVIAVITVLWYGKEPSISEGYNALMNDDFKFIDTHFS FT NVSYAKKCYDLANFDLDFLRIVIIPLSGGTANESRSDRTNVSEIVESHVSDRDRMHILL FT RNKRIQIPSLLPCDN" FT CDS 5894. .6442 FT /codon_start=1 FT /product="p20" FT /protein_id="AAY15738.1" FT /translation="MRAYFSVNDYISLLAKVGSVVERLCDPSVTLTEVMDEINDFNSFL FT ALVHSMKSDMNGDHQDGHHEMGEHKSRLLCNIEAKLRVLLDIIRRRFTREKLLCTSATD FT VVGFFVVRYMSSSHTSFETVMRTELKLVVKAVLSELSRTHKLDFSERAFTAYGILLQKG FT TVATVCGQFDINLVSPSCV" FT CDS 6525. .7154 FT /codon_start=1 FT /product="p23" FT /protein_id="AAY15739.1" FT /translation="MDDTSGQTFVSVNLSDESNTASTKVENVKSEADRLEFLRKMNPFI FT IDALVRKTNYQGARFRARIIGVCVDCGRKHDKALKTERKCKVNNTQSQNEVAHMLMHDP FT VKYLNKRKARAFSNAEMFAIELVLYTKERQLAVDLAAEREKTRLARRHPIRSPEETPEH FT YKFGMTAKAMLPDINAVDVGDNEETSSEYPVSLSVSGGVLREHHFI" XX SQ Sequence 7368 BP; 2005 A; 1381 C; 1784 G; 2198 T; 0 other; AY995567 Length: 7368 May 3, 2005 09:01 Type: N Check: 3870 .. 1 acggggtttc aatggactgt gtgattcaag gatttttgac ttttctggtt 51 ggtatagctg tgttttcggc ctttgccgga ctgattatca ttgttataac 101 gatttatcgg tgcacgacta agcctgttag gaacacttct tcttacggca 151 ctcacgccac tgtctaagcg gtatggtact tctgggttta gactttggta 201 ccacgttttc gacggtggct atggctacat cctctgagtt agttatactc 251 aaacaatcta attcatcgta catacctaca tgtttgtttt tgcatgcaga 301 ccctaacagc gtgtcttatg gttacgatgc ggaatattta gcggcttctg 351 gggagcctgg ttctttttac aaagatttga aacggtgggt tggttgcact 401 gcgaagaact accaaaccta cttacacaaa ctatcgcctt cctataaggt 451 gacggtggaa gagtttggaa ctaagagtgt gccagtccca tatttgtcac 501 ctctgaataa cgatttggga ctcaatgtcg ctttaccttt actaatcgct 551 tcgtatgcca aatccatttt gtcggatgcg gaacgagtgt tcaatgtaag 601 ctgcactgga gttatatgtt cggtacccgc tggttataac acgttgcaac 651 gagcttttac gcagcagagt atatcgatgt cgggttactc ttgcgtgtac 701 attattaacg aaccttcagc agccgcatac tccactttac ctaagttgag 751 ttcggcagat aaatatttag ccgtttacga cttcggcggt gggactttcg 801 acgtctctgt agttagcgtc agattgccta cgttcgccgt taggagttcg 851 ggtggtgaca tgaatttagg tggtagagat atcgacaaaa agttatctga 901 taaaatatac gaaatggcag attttatacc gcaaaaggaa ttgaacgttt 951 ctagtttaaa ggaagcttta tctcttcaaa ctgatccggt caaatatact 1001 gtaactcatc acggaatgag tgagacgata tcaattgatc aaacggcgtt 1051 gagggagata gcttcggtgt tcataaatcg aacgatagat atacttacgc 1101 aagttaaagt taagtctagt atgcccgaat cgcaaagttt aaagttagtg 1151 gtagtcggtg gaagctcgta cctaccagga ttgttggata ctttggcaac 1201 cgtgcctttc gtgtctggga tagtaccagt ggaagacgca agaaccgcgg 1251 tcgctagagg gtgtgcttta tatagtgagt gcttagatgg taggtccaag 1301 gccctactaa tagattgtat tacacatcat ttgtcggtta cgacgtttag 1351 cgcggactcg gtcgttgtcg cagcggccgg tagtccaatt ccttttgaag 1401 gagaacgaaa actcacgtta cgcaaatgcg ttagcacgtc taactatcaa 1451 gcaagaatgt ttgaaggaga ttacgaaaag gttttccgaa atgaacgtat 1501 ctacgcagct tcagtatcgt tgtttacttt aggagttaat tggcgtgtgc 1551 ctaaagacgt tgaaatgact ctcgtgacca aagtggactc aatgggtaaa 1601 gtggaatttt accttaaagg tccatctggt gaactagtca acgtgcaagg 1651 tacttcgcat tacgattata ctggtatgcc tcaccccact agaaatttgg 1701 tgaagcttag cgattacaat gtaaactccg ccgctttagt tttagctttg 1751 acattaactc gcgaaaaacg agaaaagttt cttttgcgga cattatttga 1801 cactttacta gcagatttgc gaaggacagc aagtttaagc gagtactcaa 1851 agaagtaccc gatcactcga aacgatatcg atgtcgtctc atcacgtatg 1901 gggatcgttg tttcgaaagt tttacgggga agcgatttgg aaagaatacc 1951 tctctgaatc aactcgaagt tttgatgaaa gaaacgtgtc gttggaccac 2001 actttgagtt cgggtgtggt cgtccgtagg cagagtcttt tgaatgcgcc 2051 tcaagggact ttcgagaacg agttagcgct attgtataat tcggtggtga 2101 ttaacgattt tgttgagttg actggtatgc cattgaagtc tttgatgaca 2151 ggtatcgagg accgtaaggt gcctgacgaa ttaatatccg ttgacccgca 2201 cgaagtcgga tgtagattca cgttaaacga cgtggaatca tatctaataa 2251 gcaggggcga ggattccgct gatgtaacgg cggtcgagca ttcgtggtgt 2301 ttgagtaact cttgtggtag actattaagt tcgaccgaga tagatgctta 2351 caaaaccttg gtgtttacca agaattttga tagtaatgta tctggagtga 2401 ctactaagtt agagacttat ctatcgtact gtatatcttt gtacaagaaa 2451 cactgcatga aagacgatga ttattttaat cttatcacac ctatgtttaa 2501 ttgtttggtg aaagtgctgg cgtcacttgg tttgttttat gagaaacata 2551 ctgacaatcc gctactgacc ggaatgctta tagagttttg cctagaaaat 2601 aaggtgtatt actctacttt taaagtaaat ttagacaacg ttagattgtt 2651 taagtctaaa gtgttgcctg tggtgttaac ggtttgggat atatctgagc 2701 ctgatgaccc agtggatgaa agggtgctaa ttcctttcga tcctactgat 2751 tttgtgctcg atttacctaa attgaatata cacgacacaa tggtggtggt 2801 gggtaatcaa atcagacagt tagagtacgt agtcgagagc gatgctttag 2851 acgatttatc tcaacacgtt gacatacgtt tagcagcgga caaccccgat 2901 ctacgcgttg atctgcgttg ggcagggatg tttgtctact acggtgttta 2951 tcggtgtgct attgatagag tggtagaacg accgacgtta tttagattgc 3001 cgcagaagtt attgagtcag gatgatggcg aatcgtgctc attgcgcatg 3051 agtgccgtcg aagctttatt taatctagtg caaaaggtga acagggacat 3101 aaacgttaga cgtcagttca tgggacgtca cagtaaagtg gctttgcgac 3151 tgtatcgcaa cttaggtttg aggtttccac cgatctcttc agttaggtta 3201 ccggttcatc acggttactt atacgtcgat ttttacaaaa gagtacctga 3251 cgatgctgtt actgccgacg aactcgaaag tttacgtcaa ttacgttcgt 3301 ccgtggacgt tatgtgtaag gacagggtgt caatcacacc tccaccattc 3351 aatcgactta gaagaggttc ttctagaaca tttagaggtc gaggcgcacg 3401 cggtgcgagc tcgcgtcata tgagcagaga cgtggcaact tccggtttta 3451 atttacctta tcatggcagg ttatacaaca cttcctaata ccgatgacaa 3501 agaaatgaat ccggtgagtg ccgctgtacc cggtaagtat ccggatgtca 3551 ttgaaaaatt tgtggccaac aggtccgtag acgcgttaat agaaggcgtc 3601 ataagtaagt tggataccaa ttcaatatac gaagattcca ctgaaaaatt 3651 tactggtgaa cacttgaaat acgttatggt tactatggat gctttcttat 3701 tagaaaacta caagacgaaa acggaagatc tgttggttca cttagctatg 3751 atccaaaaga ggttgtgcac tacatccacg agcactaaaa ccaagttccg 3801 cgataaaggt tgtattagtt acgtgcaagg gggttcgcga tataagttaa 3851 tggataaagt agtttttcct ttcattatat cgaaatttac cgacagggag 3901 actccgaacg ctctacgtaa gtatgcttgc actttcgagg agttacactt 3951 gtgtatggct aggttgagac ccgacttata cgaaaataaa aggacgacta 4001 aagccgggac tccacattta aagggctatt tatcagccga ctttctttcg 4051 ggttctctcc cagggtactc cgaacatgaa cgaggcatca ttcttcgagc 4101 gtctgagtct atgttagcta gacgtcaagg ttacgaggag gcaaccgagc 4151 ttcttaacct acgtgatttg ggtaagtact tgtagttggt ttggggacgg 4201 taatattatt attataccat cccttgagcg ctgctttaag ggtcgttaat 4251 tgacgactct tgatatattt actaggtttg aattatggac gacgaaacaa 4301 agaaattgaa gaacaaaaac aaggaaacga aagaaggcga cgatgttgtt 4351 gctgctgagt cttctttcgg ttccgtaaac ttacacatcg atccgactct 4401 gataacgatg aacgatgtgc gtcagttgag tactcaacag aatgctgctt 4451 tgaacaggga cttatttctt gctctgaaag ggaagtatcc taacttgcct 4501 gacaaagata aggactttca catagctatg atgttatacc gtttagcggt 4551 taagagttca tcattgcaaa gtgatgatga caccacgggc ataacgtaca 4601 ctcgggaggg tgttgaagta gatttgtctg acaaactttg gaccgacatc 4651 gtgtataatt ctaagggtat tggtaaccga actaacgccc ttcgagtctg 4701 gggtagaact aacgatgctc tttacttagc cttttgtaga cagaaccgca 4751 atttgagtta tggcggacgt ccgctagatg cagggattcc ggctgggtat 4801 cattatttgt gtgcagattt cttgaccgga gctggcttga ctgatttaga 4851 atgtgctgtg tacatacaag ctaaagaaca attgttgaaa aagcgagggg 4901 ctgatgaggt tgtagttact aatgtcaggc agcttgggaa atttaacaca 4951 cgttgatcta ttgcgttccg attcccggtt tctatcggga tggtggagtt 5001 tcatcgtgaa cgtgggtgat ataattgtcc ggttcgcgtt acacgttcct 5051 aatgaagata tgctgaatag tttttcagct atatcgaatt gtacgattat 5101 agcggatggt agtgctttac taaaggacaa tactgtggtt gaccgtttag 5151 aaagcatgaa tcctttggct tatttgttaa aattagcgaa aacgactact 5201 actatttgtt ttaccatgtc caataaggtt ctttttggta ctaccaaatc 5251 cgaaccactt agttgtttag ctatcacgtc ggatcgagtt ttattcaaag 5301 ttattatggg cgctaacgtt gatgattctc ggtgcggctg cagtatttgg 5351 ttttacaaca atggtacgtt tcaaaacgga ttgacccgtt gtaataatct 5401 cgtcactttg tttagcgcga cttagacacg aagtgaccgt tcggatttaa 5451 ttgctgcgat gagtattcga cgcgtgtggt taaaggttat agctgtaatt 5501 acagtgttgt ggtacggtaa ggaaccttct attagtgaag gttacaatgc 5551 tcttatgaat gacgacttta aatttatcga tacgcatttt tctaacgttt 5601 cttatgctaa gaaatgttac gatttggcta atttcgattt agactttttg 5651 cgcatcgtta tcattccttt gagtggtggc acggcgaatg aatcgcgttc 5701 tgatcgcact aacgtttcag agattgtcga atcgcatgta agcgaccgag 5751 acagaatgca catcttgttg cgtaataagc ggatccagat tccttcgctc 5801 ttaccctgcg ataactagag tctactcagt agtacgtcta ctagtataac 5851 gtattaaaca ctttagtgag gagttttgtt tgaatcaaac aatatgcgag 5901 cttactttag tgttaacgat tacataagcc ttttggctaa ggttggttca 5951 gttgtggaac gtttgtgcga tcccagcgta actctcacgg aagtgatgga 6001 cgaaattaat gattttaact cgtttctcgc tttggtgcac tctatgaagt 6051 cggacatgaa cggcgatcat caggatggtc accatgagat gggtgaacat 6101 aaatctcggt tgttgtgcaa tatagaggcg aaactgcgag tgcttctcga 6151 catcataaga cgtcggttta ctcgcgaaaa actgctctgt accagtgcta 6201 cagatgttgt gggcttcttc gtcgtgaggt acatgagttc tagtcacact 6251 agtttcgaaa ccgtaatgcg aacggaactg aagttggtgg ttaaagctgt 6301 gctgtcggaa ttgtcccgca cgcataaact agattttagc gagcgagcct 6351 ttacggctta cggtatcctt ttgcagaagg gcaccgtggc aaccgtttgc 6401 ggtcagtttg acattaattt agtttctccg tcttgcgtgt aggttaatac 6451 gcttctcaga acgtatggtt gtattaacta actttaattc gaacatattt 6501 attgtttaaa gtctgtgagt tacgatggat gatactagcg gacaaacttt 6551 cgtttctgtg aacctttctg acgaaagcaa cacggcaagc actaaagttg 6601 aaaacgtaaa atcggaagcg gatcgcttgg agtttttacg taaaatgaat 6651 ccctttatta ttgacgctct ggtgcggaaa accaattatc agggtgctcg 6701 ctttcgcgca agaataatag gagtgtgcgt ggattgtggt agaaaacacg 6751 acaaggcgct caagactgaa cgtaagtgta aggtcaacaa tacgcaatct 6801 cagaacgagg tggcgcatat gttgatgcac gatcccgtca agtatttgaa 6851 caaaagaaag gctagagcct tttctaacgc agagatgttt gcgattgaat 6901 tggttttgta caccaaggaa aggcaattgg cggtcgattt agccgctgaa 6951 agggagaaga cgagactggc tcgtagacac ccaatacgtt ctccggaaga 7001 aactccggaa cattataaat tcggtatgac tgctaaggca atgttaccgg 7051 acatcaacgc cgtagacgtt ggtgataacg aggaaacttc gtcggagtac 7101 ccagtgagtc tgagtgtttc tggcggagtt ctccgtgaac accacttcat 7151 ctgattgaag tggacggaat aagttccttg cggaacttta agtcgggttg 7201 gtaaaaaccc tttatgatgg tgatgtatca ctagacaata accggatggg 7251 taaagtcttt aaaatgatcg aggggaaaat taaccgtatc ctctcgttgg 7301 tctaagctcc cacagagtgg tagtggtctc aagtgaggct taacgtatgc 7351 gtgaaccaaa gaagttct