Sequence of DPV Tobacco necrosis virus D
Tobacco necrosis virus D genomic RNA, complete genome.
ACC No: D00942
Dated: 2009-10-08 | Length: 3762 | CRC: 196893536
ID D00942; SV 1; linear; genomic RNA; STD; VRL; 3762 BP. XX AC D00942; XX DT 12-DEC-1991 (Rel. 30, Created) DT 08-OCT-2009 (Rel. 102, Last updated, Version 12) XX DE Tobacco necrosis virus D genomic RNA, complete genome. XX KW . XX OS Tobacco necrosis virus D OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae; OC Necrovirus. XX RN [1] RP 1-3762 RA Coutts R.H.; RT ; RL Submitted (08-APR-1991) to the EMBL/GenBank/DDBJ databases. RL Contact:Robert H.A. Coutts Imperial College of Science, Technology and RL Medicine, Department of Biology; SW7 2BB, Prince Consort Road, London SW7 RL 2BB, U.K. XX RN [2] RX PUBMED; 1856691. RA Coutts R.H.A., Rigden J.E., Slabas A.R., Lomonossoff G.P., Wise P.J.; RT "The complete nucleotide sequence of tobacco necrosis virus strain D"; RL J. Gen. Virol. 72:1521-1529(1991). XX RN [3] RA Offei S.K., Coutts R.H.A.; RT "Location of the 5'termini of tobacco necrosis virus strain D subgenomic RT mRNAs"; RL J. Phytopathol. 144:13-17(1996). XX FH Key Location/Qualifiers FH FT source 1. .3762 FT /organism="Tobacco necrosis virus D" FT /strain="D" FT /isolate="Rothamsted, U.K." FT /mol_type="genomic RNA" FT /db_xref="taxon:12056" FT misc_difference 1 FT /replace="a" FT /citation=[2] FT CDS 39. .2216 FT /codon_start=1 FT /transl_except=(pos:645. .647,aa:OTHER) FT /product="82K protein" FT /note="readthrough stop codon 645-647" FT /db_xref="GOA:P27209" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/Swiss-Prot:P27209" FT /protein_id="BAA00785.1" FT /translation="MESLPIVLLSLISKAVVLICSLLTLIIQNSTAVTWGLACVWLAYV FT SFRFLFQVKITVHPAARETFESMVRKFQAESMFSEEATPCIVSVGDKDADLTPDPQRED FT IKIVKSSRRVSYAVRVAHVAKAQVGLLANSRANELVYSRLCREEMVKHGVRPSHIAHMV FT PLAVAACFIPLDSDFLAASIRQGEGMRERRALLGPSWEKXGGLLVTSGFTTPTWRGDPR FT GMLVTKGPPLAKPRKLYRFTGMGTHIRYGVHDHSLGNVRRGLVERLYMVEVKGELQPTP FT KPTPGAFNQMSRFSDRLSIHLPKTTRLTPREFLGFYTGRKLERYQKAVESLEMHPVREK FT DAWLSTFVKAEKLNITAKPDPAPRVIQPRDPRYNVEVGRFLRHSEEMLFKAINKTFGGR FT TIFKGLSSDQAGEEFKTLWDSFKDPVGIGMDASRFDQHISKDALEFEHKMWLSMFPKSE FT RAELARLLSWQINNRGLARCPDGEIRYRVEGCRMSGDMNTSSGNCYIMCATVHNWCDNI FT KHIKHFRLANNGDDCMLVVERSDEKKVRNGLIEYYATLGFTMKVEPTVDVLERLEFCQT FT RPVLVDGKYRMVRNLHQSMSKDLHSLHDLDSSAARNAWVTAVGTGGRCMNDGVPVLKEF FT FKQFPDYNLEVKKGSDMAQKLRDDWKYKFNRTAAFQDLIPTQESRYSFWLAFGLLPDEQ FT IALENGFSPLKMEIVNEQIQEETSLLQFSGA" FT CDS 39. .647 FT /codon_start=1 FT /product="22K protein" FT /db_xref="GOA:P27209" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/Swiss-Prot:P27209" FT /protein_id="BAA00786.1" FT /translation="MESLPIVLLSLISKAVVLICSLLTLIIQNSTAVTWGLACVWLAYV FT SFRFLFQVKITVHPAARETFESMVRKFQAESMFSEEATPCIVSVGDKDADLTPDPQRED FT IKIVKSSRRVSYAVRVAHVAKAQVGLLANSRANELVYSRLCREEMVKHGVRPSHIAHMV FT PLAVAACFIPLDSDFLAASIRQGEGMRERRALLGPSWEK" FT misc_difference 142 FT /replace="t" FT /citation=[2] FT CDS 2213. .2401 FT /codon_start=1 FT /product="7K protein" FT /db_xref="UniProtKB/TrEMBL:Q9YPI4" FT /protein_id="BAA00787.1" FT /translation="MKTHQFHLKIESRWKIQKMSVVGETNESIVRRGSRRVAIKKLAKL FT PCAKKVMLSRTWVLQFQ" FT CDS 2251. .2448 FT /codon_start=1 FT /product="7K protein" FT /db_xref="UniProtKB/Swiss-Prot:P27211" FT /protein_id="BAA00788.1" FT /translation="MENTENVRSGRNQREYSKERQQEGGYKEVSKAAVRKEGDVKQDMG FT PSVSMTVVGEKVEFTQHFHF" FT misc_difference 2294 FT /replace="" FT /citation=[2] FT misc_difference 2376 FT /replace="" FT /citation=[2] FT misc_difference 2384 FT /replace="" FT /citation=[2] FT CDS 2448. .2648 FT /codon_start=1 FT /product="7K protein" FT /db_xref="UniProtKB/Swiss-Prot:P27212" FT /protein_id="BAA00789.1" FT /translation="MAYIIVHQRDPFPLLGVWIIVIIIVAVIGLLNQSPPERPYQTFKE FT DNSKIQYITIGGSTTTKVSTS" FT CDS 2650. .3456 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:P27210" FT /db_xref="InterPro:IPR000937" FT /db_xref="UniProtKB/Swiss-Prot:P27210" FT /protein_id="BAA00790.1" FT /translation="MPKRGRVGLAESFQSKTKKQKENEYNAFQREKMERALANNARAAP FT KSSGMTFRPLTVPVAGSVIYSRPRVPQVRTNQMSTFVVNTELVANITLAAAGAFSFTTQ FT PLIPSFGSWLANIADLYSKWRWISCSVVYIPKCPTSTQGSVVMAIVYDAQDTVPTTRTQ FT VSQCYQSITFPPYAGYGGASALNHKGSGGESLVSTLDTNRVDKRWYSTIGNAAFTALTS FT IDKNQFCPATAIIAGDGGPAAATAVGDIFMRYDIEFIEPVNPSINV" XX SQ Sequence 3762 BP; 1032 A; 790 C; 952 G; 988 T; 0 other; d00942 Length: 3762 08-OCT-2009 Type: N Check: 6775 .. 1 gatacctaac cagtgtctca gtgattaagt aatcagctat ggagtcctta 51 ccaattgtcc tattatccct tatttccaag gcagttgtgc tcatctgtag 101 tttgttaacc ctaataatcc aaaattccac agcagtgaca tggggcctag 151 catgcgtatg gttggcatat gtttcgttca ggttcttatt ccaagtcaag 201 atcacagtcc accccgcagc ccgcgagaca tttgagagca tggtgcgcaa 251 gttccaagct gagtctatgt ttagcgagga agccacacct tgcatagtca 301 gcgtaggtga caaggacgca gatctcaccc ccgatccaca aagagaggat 351 ataaaaattg tgaagtcttc gaggagagtg agttacgcag ttcgtgttgc 401 ccatgttgcc aaagcccagg tagggttact cgccaacagc agagctaatg 451 aattggtcta cagccggttg tgcagggaag agatggttaa acatggagtg 501 agacccagcc atatagcaca catggtgcca cttgctgtgg ctgcatgctt 551 cattcctttg gatagtgact ttctagccgc ttccatcaga cagggtgaag 601 gcatgaggga gaggagggcc cttctagggc cctcgtggga gaaataggga 651 ggcctattag tcacaagcgg attcacaacg ccaacatggc gtggtgatcc 701 gaggggtatg cttgtgacta aaggacctcc cctcgcgaaa ccccgtaaat 751 tgtaccgatt tactgggatg ggaacacata ttcggtacgg agtgcatgat 801 cactcattgg gcaatgttcg gcggggacta gtggaaagat tatatatggt 851 tgaagttaaa ggagaacttc aaccaactcc aaagcccacc cccggagcgt 901 tcaaccagat gtcccggttc agtgaccgac tgagtatcca tctgcctaag 951 accacccgct tgacacctag ggaattcctt gggttttata cgggtcgcaa 1001 gttggagaga taccagaagg ctgttgagtc gttagagatg catcccgtga 1051 gggaaaagga tgcctggctt agcacgttcg tgaaggctga aaaattgaat 1101 atcacagcca aacccgaccc cgctccacgg gtgatacaac ctagggatcc 1151 taggtataat gtggaggtgg ggcgcttttt gcgacacagt gaggaaatgt 1201 tgttcaaggc cattaataaa acatttggcg gaaggactat tttcaagggc 1251 ctcagctctg atcaagctgg ggaggagttt aaaacgctct gggattcatt 1301 caaggatcca gtcggcattg gtatggatgc ttctagattt gaccaacaca 1351 tatctaaaga tgctcttgag tttgagcaca agatgtggct tagcatgttc 1401 cctaaaagtg agcgtgcaga gttagctcga ttgttgagtt ggcagattaa 1451 taatagaggc ctagcccggt gtccggatgg ggagattaga tacagagtgg 1501 aagggtgtag aatgtctggg gacatgaata cctctagcgg aaattgttac 1551 atcatgtgtg caacagtgca taattggtgt gataatatca aacatattaa 1601 gcatttcaga cttgccaata atggtgacga ctgcatgctg gttgttgaac 1651 gcagtgatga gaagaaagtc cgtaatgggc taattgagta ctatgcaaca 1701 cttgggttta cgatgaaggt tgagcccaca gtggatgtat tggaaaggtt 1751 agagttttgc cagacaagac ctgttttagt ggatggcaag taccgaatgg 1801 tgcgaaacct tcatcagagc atgtctaaag atctacactc attgcatgac 1851 cttgatagta gtgccgcgcg taacgcatgg gttacagccg ttggaactgg 1901 gggaaggtgt atgaatgatg gggtgcctgt tctcaaagaa tttttcaaac 1951 agtttccaga ttataatttg gaagtcaaga aaggttctga tatggcacag 2001 aagttgagag atgattggaa gtataagttc aataggactg ctgcttttca 2051 ggatctcatc cccacccagg aatcacgtta ctccttttgg cttgcgttcg 2101 ggttgttacc tgatgaacaa attgccctgg aaaatggctt ctcccctttg 2151 aagatggaga tagttaatga gcagatccag gaggagacat ctctcctcca 2201 gttttctggg gcatgaaaac tcaccaattt caccttaaga tcgagtctag 2251 atggaaaata cagaaaatgt ccgtagtggg agaaaccaac gagagtatag 2301 taaggagagg cagcaggagg gtggctataa agaagttagc aaagctgccg 2351 tgcgcaaaga aggtgatgtt aagcaggaca tgggtccttc agtttcaatg 2401 acggtggtgg gtgagaaagt tgaattcacc caacattttc atttttaatg 2451 gcttacatta ttgttcatca acgtgatcca tttccccttc taggggtttg 2501 gatcattgtt atcatcattg tcgcagttat tggtttattg aaccaaagcc 2551 ctcctgaaag accttaccaa actttcaaag aagataattc taagattcaa 2601 tacattacaa tcggaggatc gaccactaca aaagtgtcta ctagttaata 2651 tgcctaagcg aggaagagtt ggattggctg aatcttttca gtccaagaca 2701 aagaagcaga aggagaatga atacaacgcg tttcagagag agaaaatgga 2751 acgagctctg gcgaataatg cccgcgcagc accaaagagt tctgggatga 2801 ctttccgccc cttaactgtt ccggttgctg ggtctgttat ctatagcagg 2851 ccacgcgtgc cacaggtccg caccaaccag atgtccactt ttgtggtcaa 2901 tactgagttg gttgctaata ttacattggc agctgcggga gcttttagtt 2951 tcacaacaca accgttgatt cctagttttg gatcttggtt agcaaatatc 3001 gcggatctct attctaaatg gagatggata tcatgttccg ttgtgtatat 3051 accaaaatgt cctacttcta ctcaaggaag tgtggtcatg gcgatagtat 3101 acgacgcaca agatactgtt ccaactacac gtacacaagt ttcacaatgc 3151 tatcaatcca tcacattccc tccatatgct ggatacggag gagcctctgc 3201 actgaaccat aagggttctg gtggtgaatc gttggtgtcc acgttggata 3251 ccaatagagt ggataaacga tggtacagca ccatcggtaa cgctgctttt 3301 actgctctca catcaattga caagaatcag ttctgtccag ccacagctat 3351 tattgctggg gatggaggac ctgctgctgc cactgctgtc ggagatattt 3401 tcatgcgata cgacatcgag ttcattgaac cggtcaatcc ctccatcaat 3451 gtttaattgc tttcatagat ccgtcttccg ggagacgtta agaagacacc 3501 cgataaaaat agtaagtaga gttgtggcgt gacaacccac aactgcatct 3551 ctttgcttat ctaattacaa tatatgttga cgtacaagcc ggatcctggg 3601 aaacaggttt aacgggctca ctgtggtggt gggccgtcga tacacttgta 3651 tgtgccccaa tattggttgt cgataagcgt cctgacatgg ctccatgcaa 3701 cagcatgggg gggtccagag tcagtcccct ctttatttac ctagagatct 3751 ctctaggaac cc