Sequence of DPV Rice gall dwarf virus
Rice gall dwarf virus genomic RNA, segment S10, complete sequence, encoding 36K protein.
ACC No: D13411
Dated: 2007-09-15 | Length: 1198 | CRC: 341648378
ID D13411; SV 1; linear; genomic RNA; STD; VRL; 1198 BP.
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AC D13411;
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DT 16-OCT-1992 (Rel. 33, Created)
DT 15-SEP-2007 (Rel. 93, Last updated, Version 9)
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DE Rice gall dwarf virus genomic RNA, segment S10, complete sequence, encoding
DE 36K protein.
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KW .
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OS Rice gall dwarf virus
OC Viruses; dsRNA viruses; Reoviridae; Phytoreovirus.
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RN [1]
RP 1-1198
RA Omura T.;
RT ;
RL Submitted (12-OCT-1992) to the EMBL/GenBank/DDBJ databases.
RL Toshihiro Omura, National Agricultural Research Center, Laboratory of
RL Virology; Kannondai 3-1-1, Tsukuba, Ibaraki 305-8666, Japan
RL (E-mail:toomura@affrc.go.jp, Tel:81-29-838-8932, Fax:81-29-838-8929)
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RN [2]
RP 1-1198
RX PUBMED; 1940872.
RA Noda H., Ishikawa K., Hibino H., Kato H., Omura T.;
RT "Nucleotide sequences of genome segments S8, encoding a capsid protein, and
RT S10, encoding a 36K protein, of rice gall dwarf virus";
RL J. Gen. Virol. 72:2837-2842(1991).
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FH Key Location/Qualifiers
FH
FT source 1. .1198
FT /organism="Rice gall dwarf virus"
FT /segment="S10"
FT /mol_type="genomic RNA"
FT /clone_lib="pBR322"
FT /db_xref="taxon:10986"
FT repeat_region 4. .16
FT /rpt_type=INVERTED
FT /note="segment-specific inverted repeats"
FT CDS 22. .984
FT /codon_start=1
FT /product="36K protein"
FT /db_xref="InterPro:IPR008776"
FT /db_xref="UniProtKB/Swiss-Prot:P29078"
FT /protein_id="BAA02677.1"
FT /translation="MAGKLQDGVAIAKIKETINLFCEYSFGDLVNNRREIVGRVHDARK
FT NAALAWPDLIMNCFLHSASHYGVVKFLLDIALSTRFGDFTLLGVSSQNYPFYDLHVVMT
FT KAFCNLDFAKDEYLMINDSFSSMMSAFLDEEGVHSAMSMELGIHDIEDRFVLRTKRLFY
FT IIHEYHMSLDEIEPWLEKLPDASGGTLLNQKSKEQMRVIFSNAKVRIANSINLYVTTHT
FT NSYNEYVREVAEYVADLWNIQTTTNTQGHENELAAEDFGVLASSSQMNGTKSELGDSVI
FT KSDGNEVKLEPAMFTRNDDEEELAGSEFTSLLSDDGRMG"
FT repeat_region 1182. .1195
FT /rpt_type=INVERTED
FT /note="segment-specific inverted repeats"
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SQ Sequence 1198 BP; 329 A; 235 C; 306 G; 328 T; 0 other;
d13411 Length: 1198 15-SEP-2007 Type: N Check: 4106 ..
1 ggtatttttc gcatagacgc aatggccggc aaacttcagg acggtgttgc
51 catagcgaag atcaaggaga cgatcaacct gttctgcgaa tattcctttg
101 gtgatttggt caacaatagg cgtgagattg ttggccgggt ccatgacgca
151 aggaaaaacg ccgcgttagc gtggccggat ttgatcatga actgttttct
201 gcattcagct tcccactatg gtgtggtgaa attccttttg gacattgctc
251 tctccactag gtttggggac tttacgttac ttggagtgtc gagtcagaac
301 tacccattct atgacttgca tgttgttatg actaaggcct tttgcaacct
351 tgattttgca aaagatgagt atctgatgat caatgattcc ttctcatcga
401 tgatgtcagc gttcttagat gaggaaggag ttcatagtgc gatgtcaatg
451 gaattgggta ttcacgacat tgaagataga tttgttctgc gtactaagcg
501 gcttttctac atcattcatg aatatcacat gagcctggac gagattgagc
551 cttggttgga gaagctgcct gatgcatcag ggggtacgct actcaaccaa
601 aagagtaaag agcaaatgcg ggtaatcttt tcgaatgcta aagttagaat
651 tgcgaacagt attaacttgt atgtaactac gcacaccaat agttacaatg
701 agtacgttcg cgaagtcgca gagtatgtcg ctgacttgtg gaacatccaa
751 acgaccacaa atactcaagg acatgaaaac gaacttgcag ctgaggattt
801 cggagtgttg gcttcatctt cacagatgaa tggaacgaaa tctgagttgg
851 gagattcagt aatcaagagc gacggaaatg aagtgaagct agagccagcc
901 atgttcacga ggaatgacga tgaagaagag ttagctggat ctgaattcac
951 gagcctgttg agcgacgacg gaagaatggg gtaagtacgc ttacttcagc
1001 ggcatccaac tgatcaccag ggtgaaagat actgttgtat attttcgcca
1051 atttataatc atttaacatc tttgaaaggg atgccgctgc actggtgatc
1101 gggtcatcat ctttgctgcg caactacttc tggagcccgg gtacccacct
1151 tgtgtggaat cccttggaca aggagacctt gctatgcgag aagatgat