Sequence of DPV Potato mop-top virus
Potato mop-top virus genes for 51K protein, 13K protein, 21K protein and 8K protein, complete cds.
ACC No: D30753
Dated: 2007-11-01 | Length: 2962 | CRC: 884367514
ID D30753; SV 1; linear; genomic RNA; STD; VRL; 2962 BP.
XX
AC D30753;
XX
DT 30-NOV-1994 (Rel. 41, Created)
DT 01-NOV-2007 (Rel. 93, Last updated, Version 10)
XX
DE Potato mop-top virus genes for 51K protein, 13K protein, 21K protein and 8K
DE protein, complete cds.
XX
KW .
XX
OS Potato mop-top virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Pomovirus.
XX
RN [1]
RP 1-2962
RA Reavy B.;
RT ;
RL Submitted (19-MAY-1994) to the EMBL/GenBank/DDBJ databases.
RL Brian Reavy, Scottish Crop Research Institute, Virology; Invergowrie,
RL Dundee DD2 5DA, United Kingdom (E-mail:virbr@scri.sari.ac.uk,
RL Tel:44-382-532082(ex.2123), Fax:44-382-562426)
XX
RN [2]
RP 1-2962
RX PUBMED; 7996148.
RA Scott K.P., Kashiwazaki S., Reavy B., Harrison B.D.;
RT "The nucleotide sequence and poteto mop-top virus RNA 2: a novel type of
RT genome organization for a furovirus";
RL J. Gen. Virol. 75:3561-3568(1994).
XX
DR RFAM; RF00233.
XX
FH Key Location/Qualifiers
FH
FT source 1. .2962
FT /organism="Potato mop-top virus"
FT /isolate="Todd"
FT /mol_type="genomic RNA"
FT /clone_lib="Td2-1, lambda ZAPII.PPMT2 & 4-2 and
FT pBluescript"
FT /clone="Tb2, pPMT2, pPMT4"
FT /db_xref="taxon:37128"
FT stem_loop 46. .110
FT /note="putative"
FT CDS 369. .1760
FT /codon_start=1
FT /product="51K protein"
FT /function="Presumably cell to cell movement"
FT /note="NTP binding site motif present at amino acids 215 -
FT 222"
FT /note="putative"
FT /note="triple gene block protein"
FT /db_xref="GOA:Q85291"
FT /db_xref="InterPro:IPR000606"
FT /db_xref="UniProtKB/TrEMBL:Q85291"
FT /protein_id="BAA06412.1"
FT /translation="MESVFNGSRPHRVKKDLPDRVNPVNTQGSSGTTGNAFIKNNNNKT
FT QNWKPGSGPGNRNEGDQTKNNKSDLQQPSEVHPENQVRPESSTGESVKQQSEPHRVLED
FT KKQSGKTAGSSVRIPEEGGGGLGSANYLGKRQLDFVAKLCVESGFKSTGKPLKRYPAEF
FT FKSSGLLEKFDKYLSSRLDKGCNISQRESEVVLKNLRSKRAEQSFLAGAVTGVPGSGKT
FT TLLRKVQCEGGFNSIVILGNPRSKTEFSNLPSCYTAKEILLLGIAIKCEVLLIDEYTLL
FT TSGEILLLQKITNSRIVILFGDRAQGSSNTLCSPEWLQVPVIFQSLTSRRFGKATANLC
FT RRQGFDFEGGEHEDKVVESPYEGSSPATDINIVFSESTREDLLECGIESTLVSDVQGKE
FT YKTVTLFIPDEDREYLTNAHLRSVAFSRHKFVLEIRCNPELFMQLINGELTSKQQPQTD
FT RYGPE"
FT CDS 1747. .2106
FT /codon_start=1
FT /product="13K Protein"
FT /function="Presumably cell to cell movement"
FT /note="putative"
FT /note="triple gene block protein"
FT /db_xref="InterPro:IPR001896"
FT /db_xref="UniProtKB/TrEMBL:Q85292"
FT /protein_id="BAA06413.1"
FT /translation="MVRNNEIGARPNKYWPVVAAVVAICLFGFLTVTNQKHATQSGDNI
FT HKFANGGLYRDGSKSIKYNCNNPRAYNGSSSNNTFSQLFLPVLLIGAALYAYLWFTRPD
FT CSVTCRGDCCRSYGG"
FT CDS 1961. .2533
FT /codon_start=1
FT /product="21K protein"
FT /function="Presumably cell to cell movement"
FT /note="putative"
FT /note="triple gene block protein"
FT /db_xref="InterPro:IPR007617"
FT /db_xref="UniProtKB/TrEMBL:Q85293"
FT /protein_id="BAA06414.1"
FT /translation="MDPPVIIHSPNCSCQFCSSELPSTHTCGSQDQTVPLHVEATAAGH
FT MEVKNFSLQYVLLVAFVSVLLGFSFCVYLKSMSNDEASDTTYYYQDLNSVEIKLGKNPL
FT DPEVIKAVHSFQEFPYGNIASIRREAEFDVQNDESSAVVLSGSNNNRRQVASTPCENNV
FT LLKLWKDDLSFTIIAVTVLVGVMLARC"
FT CDS 2461. .2667
FT /codon_start=1
FT /product="8K protein"
FT /note="Cysteine rich protein"
FT /db_xref="UniProtKB/TrEMBL:Q85294"
FT /protein_id="BAA06415.1"
FT /translation="MERRFIVYYNCSDCACGRYVSSLLTMSGAYVNVCVCIVFFILVYL
FT SSCYNMRVLGFLRVCIYLYKLCR"
FT repeat_region 2675. .2805
FT /rpt_type=DIRECT
FT /rpt_unit_range=2675. .2725
FT /note="location is not clear"
FT /note="putative"
FT stem_loop 2704. .2725
FT stem_loop 2782. .2803
XX
SQ Sequence 2962 BP; 847 A; 541 C; 694 G; 880 T; 0 other;
d30753 Length: 2962 01-NOV-2007 Type: N Check: 5160 ..
1 gtatttcaac tctacctagc cgagtgctta cttgagtaaa ttcctgaggt
51 cttttctaaa ttctaatttc gcccgtcttt acgaaagaga ttgaatttag
101 aaaagacctc gatctaacga gtcgcgaaca attgatcgac tttagtcctc
151 tctgttggtc atttgaaaac cgtctagaat cacatttcgc ccgtttgtac
201 gatagaagtt gattcttgga agcttttcaa tctaacagat tgtgagtatt
251 gctggtctct ggtccttttc gttgggaaag gttgcagatt tcaatatccc
301 gccgctaagc gataggggtt tgtatttgtt aacttggttc gaattcctaa
351 ttgtttcacg attcttgtat ggaaagtgta ttcaacggaa gtagaccaca
401 cagagtgaag aaggatttgc ctgatagggt gaatccggtt aacactcagg
451 gatcttctgg tacaactggt aacgcgttta taaagaataa taataataaa
501 acacaaaatt ggaaacctgg gagcggtcct ggtaacagga acgagggcga
551 ccaaacaaaa aacaacaagt ccgacttgca acaaccaagc gaagtgcacc
601 ccgaaaatca ggtgcgacca gaatcatcaa ctggtgagtc cgtaaagcaa
651 caatcagaac cacaccgtgt gcttgaagat aaaaagcaat cagggaaaac
701 cgcaggctca agcgtgagaa tacctgaaga aggtggtggt ggtttagggt
751 cagcgaacta cctcgggaag agacagctcg attttgtcgc taaactttgt
801 gttgaaagtg gattcaaatc tactggtaag cccttgaaaa ggtatccggc
851 agaatttttc aaaagttctg gtctgctaga aaaatttgac aagtacttaa
901 gttcccgttt ggataaaggt tgcaatattt cgcagaggga atctgaagta
951 gttttaaaga atttgaggtc gaagagggcc gaacagtcgt ttttggctgg
1001 tgccgtgact ggtgttccag gtagcggaaa aactactttg ctgaggaaag
1051 tccagtgtga aggaggtttt aattccattg tgattttggg taatcccaga
1101 tcaaagactg agttctcgaa tctgcctagt tgttatacag ctaaggagat
1151 attgttactc gggattgcaa ttaagtgtga ggtgctttta atcgacgaat
1201 atactctttt gacgagtgga gaaatattac tactgcagaa gatcactaat
1251 agtcggatag ttatactatt cggagacaga gcccaaggca gtagtaatac
1301 attgtgcagc ccggagtggt tacaggtacc cgttatattt caatctctga
1351 cgagtaggag atttggtaaa gctacagcga atctttgcag aaggcaaggt
1401 tttgattttg aaggtggtga acacgaggac aaggttgtag agagtcccta
1451 cgaagggagt agtccagcta ctgatattaa cattgtgttc tctgaaagca
1501 ctcgtgaaga tttacttgag tgcggtatag agtctacgct tgttagtgac
1551 gtgcaaggaa aagagtacaa aactgtgact ttgttcatac ctgacgagga
1601 ccgagagtat ctgaccaacg cccacctacg ttccgtcgct ttttcccgac
1651 ataagtttgt gcttgaaatc cgttgtaatc cagaactgtt catgcagttg
1701 attaacggag aattgacatc gaaacagcaa ccacaaacag acaggtatgg
1751 tccggaataa cgaaattgga gcgcgaccaa ataaatattg gccggtagtt
1801 gcggcagtag ttgcaatttg tcttttcggt tttttaacag ttaccaatca
1851 aaaacacgct actcaatcag gagataatat acataagttt gctaacggtg
1901 gcctgtacag ggacggttct aagagtatta agtataattg taataatccc
1951 agagcttata atggatcctc cagtaataat acattctccc aattgttctt
2001 gccagttttg ctcatcggag ctgccctcta cgcatacttg tggttcacaa
2051 gaccagactg ttccgttaca tgtagaggcg actgctgcag gtcatatgga
2101 ggttaaaaat ttttctttgc agtatgtttt gttagtggct tttgtcagtg
2151 ttttgttagg attctctttt tgtgtgtact tgaagagtat gtctaatgat
2201 gaagcttctg atacgactta ctattaccag gatttaaatt ctgttgaaat
2251 taaactggga aagaacccgc ttgatccaga agtcattaag gctgtacaca
2301 gctttcagga atttccttat gggaacattg catcgataag acgtgaagct
2351 gaatttgatg ttcaaaatga tgagtctagt gcggtggttc tgtccggttc
2401 taataataat agaaggcaag tagcaagtac gccctgtgaa aataatgtat
2451 tacttaagtt atggaaagac gatttatcgt ttactataat tgcagtgact
2501 gtgcttgtgg gcgttatgtt agctcgttgt taacaatgtc cggtgcttac
2551 gtgaatgtat gtgtttgtat tgtatttttc attctcgtgt atttgtccag
2601 ttgttataat atgagggtcc taggtttttt acgggtatgc atatacctat
2651 ataaattatg ccgttgacac tacgttaagt gttagtgctt acaggacttc
2701 ggtctgtggt tcacttaaat cgaaccattg gagtaatccg acgttaatat
2751 cacgttaagt attggtgctt ccagggttaa accgtggttc accttaatcg
2801 aaccagtctc atttgagaca aaactgactt cctagctgtt tttgagataa
2851 ttccaaaaaa ctcattatcc ggcttaggga agagcggcca gttgctgctg
2901 cgatcaagac acgatcgttc aaaagggtgc aactcccccc cccttggagg
2951 gtatccaaga cc