Sequence of DPV Broad bean necrosis virus
Broad bean necrosis virus genes for capsid-readthrough protein, capsid protein, complete cds.
ACC No: D86637
Dated: 2006-06-09 | Length: 2831 | CRC: 659337981
ID D86637 standard; genomic RNA; VRL; 2831 BP.
XX
AC D86637;
XX
SV D86637.1
XX
DT 30-NOV-1998 (Rel. 57, Created)
DT 09-JUN-2006 (Rel. 88, Last updated, Version 4)
XX
DE Broad bean necrosis virus genes for capsid-readthrough protein, capsid
DE protein, complete cds.
XX
KW .
XX
OS Broad bean necrosis virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Pomovirus.
XX
RN [1]
RP 1-2831
RA Namba S.;
RT ;
RL Submitted (19-JUL-1996) to the EMBL/GenBank/DDBJ databases.
RL Shigetou Namba, The University of Tokyo, Laboratory of Bioresource
RL Technology, Graduate School of Agricultural and Life Sciences; 1-1-1
RL Midori-cho, Tanashi, Tokyo 188, Japan (Tel:81-424-69-3125,
RL Fax:81-424-69-8786)
XX
RN [2]
RA Lu X., Yamamoto S., Tanaka M., Hibi T., Namba S.;
RT "The genome organization of the broad bean necrosis virus(BBNV)";
RL Arch. Virol. 143:1335-1348(1998).
XX
FH Key Location/Qualifiers
FH
FT source 1. .2831
FT /organism="Broad bean necrosis virus"
FT /segment="2"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:79918"
FT CDS 413. .2353
FT /codon_start=1
FT /transl_except=(pos:947. .949,aa:OTHER)
FT /product="capsid-readthrough protein"
FT /note="readthrough pos:947. .949, UAA (ochre) stop codon"
FT /note="readthrough product"
FT /db_xref="GOA:Q9YPH4"
FT /db_xref="InterPro:IPR001337"
FT /db_xref="UniProtKB/TrEMBL:Q9YPH4"
FT /protein_id="BAA34694.2"
FT /translation="MTAAMEPHYAVFSNKMAKYAAAHPFIKYNELSETVKSWMQTRTSV
FT MEHVNFVLGSAANLGTRGFFSRNVRFGMTNVNGDNLYADLGYLPFQNLLNALTIVLGAV
FT GGRGKLRRNPKGESSKAAATEQINGGSDGQLNIAHCIMDINQVMSDPTILQNAVYSQST
FT FEEAHGLAWVYKPTAXQLTYPIKDPNEMLREFALRLKLANNLGILPGQPKRKSAVGKEN
FT LDINHTELDKPLIPRFNHADKDESVLTDKIILSPSKDNDGNDLIQAEQEVFDVDKIEGR
FT KRRNWFLWLFMLFSMFSIVCFIWSFDFVSRLFPNGDSGGMLKRNLWKFHMFLHNNRISL
FT RNRAARKFLALKRRKHVSVLKKEMKFAIKQWAEKGIVPLPRDIEWDMGRDCVDISHKFN
FT LMVSVVERIENMRGYDITEDVIHDLAYHMSYFSTDVEVEKPLLNSPVITVLNKRTIPKS
FT KNLAELFSQEASLRTVDTAQYVLRLKVPKSTVSEVTAKQYAILNLMTSTVDHVLKCALP
FT AESSMTGEQLREVYVLRVLKTLFMSIGSNEFMGKYERYKGPEYNCVKEALDLHVIRTRA
FT SISERKDSNVLKIEHSRSDDGTAKTSEIIGIAAGAALTTAVTAQGVSKLMALMRARSEG
FT RDIERLQRFAS"
FT CDS 413. .949
FT /codon_start=1
FT /product="capsid protein"
FT /db_xref="GOA:Q9WK09"
FT /db_xref="InterPro:IPR001337"
FT /db_xref="UniProtKB/TrEMBL:Q9WK09"
FT /protein_id="BAA34695.1"
FT /translation="MTAAMEPHYAVFSNKMAKYAAAHPFIKYNELSETVKSWMQTRTSV
FT MEHVNFVLGSAANLGTRGFFSRNVRFGMTNVNGDNLYADLGYLPFQNLLNALTIVLGAV
FT GGRGKLRRNPKGESSKAAATEQINGGSDGQLNIAHCIMDINQVMSDPTILQNAVYSQST
FT FEEAHGLAWVYKPTA"
XX
SQ Sequence 2831 BP; 854 A; 434 C; 662 G; 881 T; 0 other;
d86637 Length: 2831 09-JUN-2006 Type: N Check: 8474 ..
1 tcgtgtctaa caattgaaat ttatccacac tcggttgtgt gttccaaaca
51 accaaaaccc taatatccaa agtaacgaga ttttattatt tacacccgaa
101 aagtgatatt ggacaactgt attgttaata acttgaagtt atacatacgc
151 ctgaaaaata ttcactggac gaaagtattg atataatttg gagttgcaat
201 acttgtatac agttacgtaa tcgaacaccc gcatttgtga acgtttgttg
251 cgtgatttgt gtataggttc gtctaaaatc aaatttgtcc tgctggcaga
301 tctatattca aatatagacg aattcgaatc agtttcagac ctcattgaga
351 gttttggtac tgcaggagtt aattcgagtg ccgtgatcga agaagtagaa
401 agaaaaacaa aaatgactgc agctatggaa cctcattatg ctgttttcag
451 taataagatg gctaaatatg ctgctgctca cccgtttata aaatataacg
501 aattgagcga aactgtgaaa tcatggatgc aaacccgtac tagtgtgatg
551 gagcatgtaa attttgtgtt gggtagtgcg gccaatcttg gtaccagagg
601 tttcttttca aggaacgtgc gctttggaat gacaaatgtt aatggtgata
651 acctgtatgc agatttgggt tatttacctt ttcaaaatct tctgaatgcg
701 ctgacaatcg ttttaggtgc tgttggtggt agagggaaat tgaggaggaa
751 tcctaagggt gagagctcca aagcagcagc tactgaacag ataaatggtg
801 gtagtgatgg gcagttgaat attgcacatt gtatcatgga cattaatcag
851 gtgatgtcag atccgacaat cttgcagaat gctgtgtatt cacaatcgac
901 attcgaagag gctcatgggt tagcttgggt ttataaaccg acagcataac
951 aattaacgta tccgataaaa gatcctaatg agatgttacg tgagtttgcg
1001 ctgaggctaa agcttgctaa caatttaggt attttaccgg gtcaaccaaa
1051 gagaaaaagc gctgtaggga aagagaacct ggatattaac catactgagt
1101 tggataagcc cctgatccct agatttaatc atgctgataa agatgaatcc
1151 gtcctaactg ataagattat actatcgcct tcgaaagata atgatggtaa
1201 tgatctgatt caggctgagc aggaagtttt tgatgttgat aaaattgaag
1251 gaaggaagag aagaaattgg tttttatggt tatttatgtt attttcaatg
1301 ttttcaattg tctgtttcat ttggtctttt gattttgtta gtcggttgtt
1351 tcctaatggt gattctggtg gtatgttaaa gagaaatctt tggaagtttc
1401 atatgttttt gcataataat agaatcagtt tgagaaatag ggctgcaaga
1451 aagtttttag cattgaaaag aaggaagcat gtctcggtct tgaagaaaga
1501 aatgaagttt gctataaaac agtgggccga gaaaggtatt gtaccattgc
1551 ctcgagacat tgaatgggat atgggtcgtg attgtgttga tatttctcat
1601 aagtttaatt tgatggtgag tgttgtggaa agaattgaga atatgcgcgg
1651 atatgatata actgaagatg tcattcacga tctcgcttat cacatgagtt
1701 acttctctac ggatgttgaa gttgaaaaac ctttattgaa cagtcccgta
1751 ataaccgtgt tgaacaaaag aacgatccct aaaagcaaga atttagctga
1801 actctttagt caagaggcct cattgagaac tgtagatact gcccaatatg
1851 tcctacggtt gaaagttcct aagtctactg tttctgaggt gactgcaaag
1901 caatatgcta ttctgaatct catgacttct actgtggatc atgtattgaa
1951 gtgcgcgtta ccggctgaga gttcaatgac aggtgaacaa ttgcgtgaag
2001 tctacgtgct gcgtgtttta aaaacactat ttatgtcaat tggttcaaat
2051 gagtttatgg gtaagtatga gaggtacaag ggacctgaat ataattgtgt
2101 aaaagaagcg ttagatttgc atgtcattag gacgagagca tctatttctg
2151 aaagaaaaga ttctaatgtg ttaaagattg aacactctcg ttccgatgat
2201 ggaactgcaa agacatccga aattataggt atcgcggctg gagctgcttt
2251 gactacagcc gtcacggctc agggtgtcag taaactaatg gctcttatgc
2301 gtgcgcgatc agaaggtaga gatattgaaa gattgcagcg ctttgcttcc
2351 tgatatacca agtgataatc ctcctgggga tggcgacggt ggacctggtg
2401 ggttaccgtc ggtgcgtagg aatgtcagtt cttccgctcc atctgatatt
2451 gaaagattcg aaaatcgttt ggccgaactt tatgcacaaa agcctctgat
2501 aattggtgaa aaaacctatt gtttctgaac aagaagacaa agatttactt
2551 ttgacaataa accttatctg ctggaggaag gttcgttggc tggtgagatt
2601 ttggatgagg atgtgctgtt tgatgagaag attagaagag taattgatcc
2651 tttagtcata aggaaattac tcttagaaga tttgcccact tctacatctc
2701 gtgagataga tagagtgaaa gctaaaggaa aagctgtttc tcgtagtcct
2751 agtactgtta gtaggagtgt tacgcgtcgt gttttgcttc cttgatgagt
2801 catttatttt gtattaatta agtttgtgat t