Sequence of DPV Tomato leaf curl New Delhi virus
Tomato leaf curl New Delhi virus segment DNA A, complete sequence.
ACC No: DQ169056
Dated: 2005-09-14 | Length: 2739 | CRC: -693899638
!!NA_SEQUENCE 1.0
ID DQ169056 standard; genomic DNA; VRL; 2739 BP.
XX
AC DQ169056;
XX
SV DQ169056.1
XX
DT 14-SEP-2005 (Rel. 85, Created)
DT 14-SEP-2005 (Rel. 85, Last updated, Version 1)
XX
DE Tomato leaf curl New Delhi virus segment DNA A, complete sequence.
XX
KW .
XX
OS Tomato leaf curl New Delhi virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2739
RA Tsai W.S.;
RT ;
RL Submitted (17-AUG-2005) to the EMBL/GenBank/DDBJ databases.
RL Virology Unit, Asian Vegetable Research and Development Center-The World
RL Vegetable Center, PO Box 42, Shanhua, Tainan, Taiwan 741, ROC
XX
FH Key Location/Qualifiers
FH
FT source 1. .2739
FT /country="India:New Delhi"
FT /db_xref="taxon:223347"
FT /mol_type="genomic DNA"
FT /organism="Tomato leaf curl New Delhi virus"
FT /specific_host="tomato"
FT /segment="DNA A"
FT /clone="D1"
FT gene 41. .427
FT /gene="AV3"
FT CDS 41. .427
FT /codon_start=1
FT /gene="AV3"
FT /product="AV3 protein"
FT /protein_id="ABA00497.1"
FT /translation="MKCTLHVLFSAWGSINRLAHQVWIHKHVGSIIARISRKRSWSKVH
FT ASCKISPRDRKELFTRHSRLRSCPRSHSCSPSEELWRSDQQISSFQRPHRRYADVSTST
FT APMELVQLSPLPASQKQRPGPTGR"
FT gene 120. .458
FT /gene="AV2"
FT CDS 120. .458
FT /codon_start=1
FT /gene="AV2"
FT /product="pre-coat protein"
FT /protein_id="ABA00498.1"
FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLQEIEKNYSPDTVGYDLVRDL
FT ILVLRAKNYGEATSRYHHFNARIEGTPTSQLRQPLWSSCSCPHCPRHKSKGLDQQADEQ
FT KTQNVQNV"
FT gene 280. .1050
FT /gene="AV1"
FT CDS 280. .1050
FT /codon_start=1
FT /note="CP"
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="ABA00493.1"
FT /translation="MAKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWT
FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR
FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGTPQDFGEVFNMFDNEP
FT STATVKNMHRDRYQVLRKWHATVTGGTYASKEQALVRKFVRVNNYVVYNQQEAGKYENH
FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT gene complement(310. .795)
FT /gene="AC5"
FT CDS complement(310. .795)
FT /codon_start=1
FT /gene="AC5"
FT /product="AC5 protein"
FT /protein_id="ABA00494.1"
FT /translation="MHVLHRCCARFIVKHVKNFPEILGSSCRTTVTDQEKHDTVSMVFC
FT LDVFIHPYLSQHIDGFHTESLPYAMCESSSSGNITNTHDFANMRDIVPRFKGLHLTRAF
FT TAPWHVGTSIHSVHSGFSVHRPVGPGLCFCDAGNGDNCTSSIGAVEVETSAYLRCGR"
FT gene complement(1047. .1457)
FT /gene="AC3"
FT CDS complement(1047. .1457)
FT /codon_start=1
FT /gene="AC3"
FT /product="AC3 protein"
FT /protein_id="ABA00496.1"
FT /translation="MITDSRTGEYITADRAESGVYTWEIRNPLYFKILKHDSRPFLTQH
FT DIIKIQIQFNHNLRKALGLHKCFLTFNIWTGLRPQIGIFLRVFKTQVLKYLDMLGVIGI
FT YNVIRAVYHVLDNVLERTIDVWTSYDIKLDIY"
FT gene complement(1177. .1596)
FT /gene="AC2"
FT CDS complement(1177. .1596)
FT /codon_start=1
FT /gene="AC2"
FT /product="AC2 protein"
FT /protein_id="ABA00495.1"
FT /translation="MQSSSHSKNHSIPVARTSLPQKKKKSIRRRRVDLPCGCSYYISIN
FT CHDHGFTHRGIHHCGSSREWRIYLGNSKSPVFQNFETRQQALPNTARHNQDSNTVQPQP
FT AESPGTSQVFSNFQHLDGLTPSDWDFLESLQNPGP"
FT gene complement(1499. .2584)
FT /gene="AC1"
FT CDS complement(1499. .2584)
FT /codon_start=1
FT /note="Rep"
FT /gene="AC1"
FT /product="replication-associated protein"
FT /protein_id="ABA00492.1"
FT /translation="MASPRRFRVNAKNYFLTYPKCSLTKEEALSQLQTLETPTRKKFIK
FT ICRELHEDGSPHIHVLIQFEGKFQCKNNRFFDLVSPSRSAHFHPNIQGAKSASDVKKYI
FT DKDGDVLEWGVFQIDGRSARGGQQTANDAYAQAINTGNKDDALKVLKELAPKDFVLQFH
FT NLNTNLDRIFQPPSEVYVSPFSISSFDRVPADLVDWVSSNVVCAAARPFRPISIVIEGD
FT SRTGKTMWARCLGPHNYLCGHLDLSPKVYSNEAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNAALKQWAIKNAVFITLEEPL
FT YSGRENIAPPEEEEEHSQEAS"
FT gene complement(2251. .2427)
FT /gene="AC4"
FT CDS complement(2251. .2427)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /protein_id="ABA00499.1"
FT /translation="MGLRISMFSSNSKGNSSAKIIDSSTWFPQVGQHISIRTFRELNQR
FT RTSKNTSTKTETF"
XX
SQ Sequence 2739 BP; 747 A; 593 C; 613 G; 786 T; 0 other;
DQ169056 Length: 2739 September 20, 2005 08:47 Type: N Check: 4086 ..
1 accgaatggc cgcgcaaatt tttaggtggg ccctcgacca atgaaatgca
51 cgttacatgt cctatttagt gcgtggggat caataaatag acttgctcac
101 caagtttgga tccacaaaca tgtgggatcc attattgcac gaatttccag
151 aaagcgttca tggtctaagg tgcatgctag ctgtaaaata tctccaagag
201 atagaaaaga actattcacc agacacagtc ggctacgatc ttgtccgaga
251 tctcattctt gttctccgag cgaagaacta tggcgaagcg accagcagat
301 atcatcattt caacgcccgc atcgaaggta cgccgacgtc tcaacttcga
351 cagcccctat ggagctcgtg cagttgtccc cattgcccgc gtcacaaaag
401 caaaggcctg gaccaacagg ccgatgaaca gaaaacccag aatgtacaga
451 atgtatagaa gtcccgacgt gccaaggggc tgtgaaggcc cttgtaaggt
501 gcagtccttt gaatctaggc acgatgtctc tcatattggc aaagtcatgt
551 gtgttagtga tgttacccga ggaactggac tcacacatcg cgtagggaag
601 cgattctgtg tgaaatccgt ctatgtgctg ggaaagatat ggatggatga
651 aaacatcaag acaaaaaacc atactaacag tgtcatgttt ttcttggtcc
701 gtgaccgtcg tcctacagga actccccagg atttcgggga agtttttaac
751 atgtttgaca atgaaccgag cacagcaacg gtgaagaaca tgcatcgtga
801 tcgttatcaa gtcttacgca agtggcatgc gactgtgacg ggaggaacat
851 atgcatcgaa ggagcaagca ttagttagga agtttgttag ggttaataat
901 tatgtagttt acaatcaaca agaggccggc aagtatgaga atcatactga
951 aaacgcatta atgttgtata tggcctgtac tcacgcatca aatcctgtat
1001 atgctacttt gaaaatccgg atctactttt atgattcggt cacaaattaa
1051 taaatatcca gttttatatc atatgaagtc catacatcaa ttgttcgctc
1101 taatacatta tccaatacat gataaaccgc tcttattaca ttataaattc
1151 ctatgacacc taacatatcc aggtacttaa ggacctgggt tttgaagact
1201 ctcaagaaaa tcccaatctg agggcgtaag cccgtccaga tgttgaaagt
1251 tagaaaacac ttgtgaagtc ccagggcttt ccgcaggttg tggttgaact
1301 gtatttgaat cttgattatg tcgtgctgtg ttaggaaggg cctgctgtcg
1351 tgtttcaaaa ttttgaaata caggggattt cgaatttccc aggtatatac
1401 gccactctct gctcgatccg cagtgatgta ttcccctgtg cgtgaatccg
1451 tgatcatggc agttgatcga tatataatag gaacaaccac acggcagatc
1501 aactcgcctc ctgcgaatgc tcttcttctt cttctggggg agcgatgttc
1551 tcgcgaccgg aatagagtgg ttcttcgagt gtgatgaaga ctgcattctt
1601 gattgcccac tgcttcagtg ctgcattttt ctcttcgtcc agatattcct
1651 tatagctgct gtttggacct ttattgcaca ggaagatagt gggaattcca
1701 cctttaatca tgactggctt tccgtacttc gtgttgcttt gccagtcacg
1751 ctgggccccc atgaattctt taaaatgctt tagatagtgg ggatcaacgt
1801 catcaatgac gttgtaccag gcttcattgc tatacacttt tgggctcaga
1851 tcaagatgtc cacacaagta attgtggggt cctaagcaac gagcccacat
1901 tgttttgcca gttctactat ccccctctat gactatgctt atgggcctaa
1951 aaggccgcgc agcggcacac acaacattgg acgagaccca atcgacgagg
2001 tctgccggaa ctctgtcgaa ggatgaaatt gaaaatggag aaacataaac
2051 ctcggaagga ggttgaaaaa tgcgatctaa atttgtattt aaattgtgaa
2101 actgcagaac gaaatccttt ggggctaatt cctttaatac tttcaacgca
2151 tcgtctttat ttcccgtgtt aatcgcctgg gcatatgcat cgttcgccgt
2201 ttgttgacct ccacgggcag atcgtccatc gatctggaaa acaccccatt
2251 ctagaacgtc tccgtctttg tcgatgtatt ttttgacgtc cgacgctgat
2301 ttagctccct gaatgttcgg atggaaatgt gctgaccgac ttggggaaac
2351 caagtcgaag aatctattat ttttgcactg gaatttccct tcgaattgga
2401 tgagaacatg gatatgcgga gacccatctt cgtgaagctc tctacagatc
2451 ttgatgaatt tcttcctcgt cggggtttct agggtttgca attgggaaag
2501 tgcctcttct ttagttagag agcactttgg atatgtgagg aaatagtttt
2551 tggcatttac tctaaaacga cgtggcgaag ccataaaact tgtcgttttg
2601 attcggcgtc cctcaactta tctatgtaat tggtgtctgg agtcctatat
2651 ataggtaaga caccatatgg cattattgta attttgaaaa gaaaattact
2701 ttaattcaaa ttccctaaag cggccattcg tataatatt