Sequence of DPV Thielaviopsis mitovirus 1
Thielaviopsis basicola mitovirus RNA-dependent RNA polymerase gene, complete cds.
ACC No: DQ173015
Dated: 2009-04-22 | Length: 2896 | CRC: -1630786630
ID DQ173015; SV 2; linear; genomic RNA; STD; VRL; 2896 BP.
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AC DQ173015;
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DT 14-SEP-2005 (Rel. 85, Created)
DT 22-APR-2009 (Rel. 100, Last updated, Version 3)
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DE Thielaviopsis basicola mitovirus RNA-dependent RNA polymerase gene,
DE complete cds.
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KW .
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OS Thielaviopsis basicola mitovirus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Narnaviridae;
OC Mitovirus; unclassified Mitovirus.
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RN [1]
RP 1-2896
RX PUBMED; 18944306.
RA Park Y., Chen X., Punja Z.K.;
RT "Molecular and Biological Characterization of a Mitovirus in Chalara
RT elegans (Thielaviopsis basicola)";
RL Phytopathology 96(5):468-479(2006).
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RN [2]
RP 1-2896
RA Park Y., Punja Z.K.;
RT ;
RL Submitted (17-AUG-2005) to the EMBL/GenBank/DDBJ databases.
RL Biology, Simon Fraser University, 8888 University Drive, Burnaby, BC V5A
RL 1S6, Canada
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RN [3]
RC Sequence update by submitter
RP 1-2896
RA Park Y., Punja Z.K.;
RT ;
RL Submitted (07-NOV-2005) to the EMBL/GenBank/DDBJ databases.
RL Biology, Simon Fraser University, 8888 University Drive, Burnaby, BC V5A
RL 1S6, Canada
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CC On Nov 7, 2005 this sequence version replaced gi:74137018.
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FH Key Location/Qualifiers
FH
FT source 1. .2896
FT /organism="Thielaviopsis basicola mitovirus"
FT /host="Thielaviopsis basicola strain HA2"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:274584"
FT CDS 428. .2545
FT /codon_start=1
FT /transl_table=4
FT /product="RNA-dependent RNA polymerase"
FT /db_xref="GOA:Q3S3F3"
FT /db_xref="InterPro:IPR008686"
FT /db_xref="UniProtKB/TrEMBL:Q3S3F3"
FT /protein_id="AAZ99833.1"
FT /translation="MIKYMKSVRLHITRYICRKPLFINNSGVSVDKSGFPTKFIELKKF
FT LNNHESSICYHTRLRIILTLLLLPRGLKPTKAEDAKIKPNFSSITLPFSGTRMNPIPTW
FT FIKEFVKEYNLKLEKPTYDLSKHYLSPKGGPMGKSTWSSIWSMYALKHELHLSLSYFLG
FT EAYKTLFYLPYLKNMALSYGHDVPPKQWPSGKLGIVKDPEGKRRIIAMVDYHSQLVLRS
FT IHDGLLNKLRNLPQDRTYNQDPNNAWEENKECFHSLDLSSATDRFPVKLQSRLLTEMYS
FT DPSFGENWMNLLLNRDYLLPEEGLSGERLRYAVGQPMGAYSSWAAFTLSHHLVVAWCTY
FT KSKKVIRSSQYIILGDDIVIKDNDIARKYIGQMSKLGVAISMQKTHVSKDTYEFAKRWV
FT HKGVEISGLPLKGIFYNISHMRRMYTIIFDYLQRIPSKSNLTSLQLFASCLSGIKFGKR
FT VYSKALILKLLRNFNISLRYSYGLLTPYELREYILTGFNMGEEVLPSDNRILEWFKGII
FT CDGVAGKVSTLSREYTKEVDSLEEHKSSQHILNSINIEITYENLQWSPLIIGMFNHINK
FT VSEKCGEWLYGDVPLMDIIQQFTLPSADSLSRKDRDINKKVDELDSLIFKSIKRHFSDQ
FT PYPDHFYGTRSNGDKYLYPGLGALDVNVAPEIGFEIKSPINFILKTEIQRLHGNLEMQM
FT EKPLREAGINC"
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SQ Sequence 2896 BP; 1012 A; 454 C; 489 G; 941 T; 0 other;
dq173015 Length: 2896 22-APR-2009 Type: N Check: 969 ..
1 ccgtttctcc ccttttgggg agaggcggct atttcttata tagttataac
51 tatataacaa gtagaaacaa gactcgaaag agcagattgg accttattaa
101 ggtatcccag tctagtcact ggttatgact caaataacaa actacatagt
151 tttgtaccag ggcctgataa gctttgtgta acatctatgc tgtgaataac
201 agaaacaaaa tatttcaatt attacaacaa actttaacaa caatttatta
251 aagcttaaag ctaacatttt aaacaaaagt ttaaaattcc aaggaggggt
301 ctccccctta cttgttaaat taactataaa ccttataata aatatatttg
351 gaaaagttga ttatagaatt attaagaatt ttctatctga gataaccaaa
401 ttatgaagaa ataatggttt cttatatatg attaagtata tgaaatctgt
451 tagattacat ataactcgat acatatgtag aaaaccgtta tttattaata
501 attcaggtgt ttcagtagat aaaagtggat ttccaactaa gtttatagaa
551 cttaagaaat ttttaaataa ccatgaaagt agtatttgtt atcatactag
601 attacgtata attttaacat tattgcttct acctcgtgga ttaaaaccca
651 caaaggcaga agatgctaaa attaaaccta attttagttc gataacttta
701 ccattttcag ggactagaat gaatcccatt cccacttggt ttattaaaga
751 atttgttaag gagtataacc ttaaattgga gaaaccaacc tatgacctaa
801 gtaaacatta cttgagtcca aagggaggtc cgatgggaaa atctacatga
851 tcatcaatat gatcaatgta tgctcttaaa cacgaacttc atttatcact
901 atcatatttc ttaggtgagg catataaaac attgttttat cttccttatc
951 tgaaaaatat ggcattgtct tatgggcacg atgtgccccc aaaacaatgg
1001 cctagtggta aattaggtat tgttaaagat ccggaaggta aaagaagaat
1051 aattgcaatg gtagattacc attcacaatt agttcttcgt tcaatccatg
1101 atgggcttct taataaatta agaaacctac cacaggatag aacatacaat
1151 caagatccta acaatgcgtg agaagagaat aaggaatgtt tccattcctt
1201 agatttatca tcagccactg atagattccc agtaaaactg caatctagac
1251 tgcttacaga gatgtattca gatcctagtt ttggagagaa ctgaatgaat
1301 ctgctcttaa atagagatta tctattacca gaagaaggcc tatcgggtga
1351 aagattgcgt tatgcagtcg gtcaaccgat gggtgcttat tctagttgag
1401 cagcattcac actttctcac cacttagtag ttgcctgatg tacttataaa
1451 tcaaagaagg tcataagatc ttctcaatat attatacttg gtgatgatat
1501 tgtcattaaa gacaatgaca tcgcaagaaa gtatattgga caaatgagta
1551 aattaggtgt tgctatttca atgcaaaaga cacatgtatc gaaagataca
1601 tatgaatttg caaagagatg agtgcataaa ggagtggaga tttcaggatt
1651 acccttgaaa ggtatctttt ataacatatc tcatatgcgt cgtatgtata
1701 cgatcatatt tgattattta caaaggatcc cttccaagtc taatttgact
1751 tctctgcaac ttttcgcatc ttgtttaagt ggtattaaat tcggtaaaag
1801 ggtatattct aaagcgttaa tacttaagtt actacgtaac tttaatattt
1851 cgctccgtta ctcatatggg ttgttaactc catatgaatt acgtgaatat
1901 attcttacag gatttaatat gggagaagaa gttcttccat cagataatag
1951 aatccttgaa tgattcaagg gtattatatg tgatggagtt gctggaaaag
2001 tctcaaccct ttctcgtgag tacactaagg aggtggacag tttagaagaa
2051 cataaatcat ctcaacatat attgaattca ataaatattg aaataactta
2101 tgaaaatcta caatgatcac cacttatcat aggtatgttt aatcatatta
2151 ataaagtatc tgagaagtgt ggagaatgat tgtatggtga tgttccatta
2201 atggacatta tccaacaatt tactctacct tcagcagatt ctttatcaag
2251 aaaagaccga gatataaata aaaaggttga tgaattagat tcattaatct
2301 ttaaatctat caaacggcat tttagtgatc aaccataccc agatcacttc
2351 tatggtacaa ggtccaatgg agataaatat ttatatcctg gacttggtgc
2401 cttagacgtg aatgtagctc ccgaaattgg ctttgaaatt aaaagcccga
2451 ttaattttat ccttaaaact gaaattcaaa gattacatgg taatcttgaa
2501 atgcagatgg aaaaacctct tcgggaagct ggaattaatt gttagaacat
2551 ggagtagtta ccatgtctac cgctttaatc cagattattt taatggaaga
2601 gtatggaata gttaccatac ctcccgctta aaatacaaat agttcaaagt
2651 gagactatat ataataatat tgctataaac aactgttaat taaagtgctg
2701 ggtttatcca tacttttagc tttatttaac agatgaagtt gaagtgctgg
2751 gtttacccat acctttagct taacttaaca tccaaattta tttgttatcg
2801 ttataactta gttaccaagt tgtgattaac atgttcacaa cttgtcttaa
2851 ggttatagcg ccgtaattct ctgaacttaa aagttcagag gaacgg