Sequence of DPV Cabbage leaf curl Jamaica virus
Cabbage leaf curl Jamaica virus clone 1966 Cu3-B6 segment DNA-B, complete sequence.
ACC No: DQ178609
Dated: 2005-09-21 | Length: 2494 | CRC: 262484859
!!NA_SEQUENCE 1.0 ID DQ178609 standard; circular genomic DNA; VRL; 2494 BP. XX AC DQ178609; XX SV DQ178609.1 XX DT 21-SEP-2005 (Rel. 85, Created) DT 21-SEP-2005 (Rel. 85, Last updated, Version 1) XX DE Cabbage leaf curl Jamaica virus clone 1966 Cu3-B6 segment DNA-B, complete DE sequence. XX KW . XX OS Cabbage leaf curl Jamaica virus OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2494 RA Smith K.N., Roye M.E.; RT "Leaf curl disease of Brassicas in Jamaica: Specifically examining RT interspecific recombination between a crop and weed virus"; RL Unpublished. XX RN [2] RP 1-2494 RA Roye M.E., Smith K.N., Maxwell D.P.; RT ; RL Submitted (24-AUG-2005) to the EMBL/GenBank/DDBJ databases. RL Biotechnology Centre, University of the West Indies, Mona, 1 St John's RL Road, Kingston, Jamaica XX FH Key Location/Qualifiers FH FT source 1. .2494 FT /country="Jamaica" FT /db_xref="taxon:345184" FT /mol_type="genomic DNA" FT /organism="Cabbage leaf curl Jamaica virus" FT /isolate="CUc-3" FT /specific_host="cauliflower" FT /segment="DNA-B" FT /clone="1966 Cu3-B6" FT gene 375. .1145 FT /gene="nsp" FT CDS 375. .1145 FT /codon_start=1 FT /note="nuclear shuttle protein" FT /gene="nsp" FT /product="NSP" FT /protein_id="ABA26600.1" FT /translation="MYPTKFRRGTSYSHRRFVSRNPSFKRGTLVRRTDGKHRKGPSSKA FT HDEPKMKLQRIHENQYGPEFVMTHNSALSTFINFPVLGKIEPNRSRSYIKLNRLLFKGT FT VKIERVHADVNMDGVSSKIEGVFSLVIVMDRKPHLSSAGGLHTFDEMFGARIHSHGNLA FT IAPGLKDRYYVLHVFKRVLSVEKDTLMVDLEGSTMISNRRYNCWASFNDLEHDSCNGVY FT ANISKNAILVYYCWMSDAMSKASTFVSYDLDYLG" FT gene complement(1204. .2085) FT /gene="mp" FT CDS complement(1204. .2085) FT /codon_start=1 FT /note="movement protein" FT /gene="mp" FT /product="MP" FT /protein_id="ABA26601.1" FT /translation="MDSQLANAPNAFNYIESHRDEYQLCHDLTEIVLQFPSTAAQFTAR FT LNRSCMKIDHCVIEYRQQVPINATGTVIVEIHDKRMTDDESLQASWTFPLRCNIDLHYF FT SSSFFSLKDPIPWKLYYRVSDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKIHS FT KQFSHRDVDFSHVDYGKWERKTLRSRSLSRIGLTGPIELQPGDSWASRSTIGLTNPQTE FT SEVENALHPYRELNQLGTSALDPGDSASQAGLQRAQSTITMSVAQLSELVRTTVQECIN FT NNCNPTQPKSLQ" XX SQ Sequence 2494 BP; 690 A; 467 C; 539 G; 798 T; 0 other; DQ178609 Length: 2494 September 27, 2005 09:57 Type: N Check: 1811 .. 1 accggatggc cgcaaatttt ttggcgtcct ggtgctgggg accatctccc 51 ggcccccctt ggcgcactat ctctcatctt tcgacgtggc gcgtcgatga 101 gcgttggcta acgcttatct cggtgttaga cctttaattt gaatttcgaa 151 ataattggtc gtatatatct atcttgaccg gtctttgtga cgacaaaact 201 tctgacacat tgtacgatat attgagcgtg gcccaattat attttctctg 251 cggagttaga ctatcgctta ttgttattca tcttgtctat ataatggacg 301 ataggttaat aatttaaatc gtctttgaca ataacattta aataacaaat 351 cattttgtag aggagctgag aataatgtat cctacaaagt ttaggcgtgg 401 gacttcttac tctcatagac gatttgtttc acgtaatcct tcttttaagc 451 gtggaacttt ggttagacgc actgatggga aacatcgtaa aggcccatca 501 agcaaagccc atgatgagcc taaaatgaaa ttacaacgca tacatgaaaa 551 tcaatatggg cctgaatttg tcatgaccca caactcagct ctttcaacat 601 tcattaattt cccggtactt gggaagatcg aacctaaccg aagcaggtcg 651 tatattaagt tgaatcgttt attatttaag ggaaccgtta agattgagcg 701 tgtgcacgct gatgtgaaca tggacggagt aagttcgaag atagaaggtg 751 tgttctctct tgttattgtt atggatcgca agccacattt gagttccgct 801 ggaggtttgc atacatttga tgaaatgttt ggtgcaagaa tccacagcca 851 tggtaactta gctattgcac ccggtttgaa agatcgttat tacgtgctcc 901 atgttttcaa acgcgtattg tctgtggaga aagacacttt gatggtggat 951 cttgaaggat cgaccatgat atctaatagg cgttataact gttgggcctc 1001 gtttaacgat cttgaacatg actcatgtaa cggtgtttat gcgaatataa 1051 gcaaaaatgc cattttagtt tactattgtt ggatgtccga tgctatgtct 1101 aaggcatcga cctttgtatc ttacgatctt gattatttag gttaatcctg 1151 aataaaatgg cgttaagatt gaatatatac ataaaaaata aaaccaagca 1201 attttattgc aatgactttg gttgtgtagg attacaatta ttgttaatac 1251 attcctggac cgtcgtccta actagctcgc ttaattgggc cactgacatc 1301 gttatggttg attgggccct ctgtaatcca gcttgtgatg ctgaatcccc 1351 ggggtctaat gcgctagttc ctagctggtt gagttctcta tatggatgta 1401 gcgcattctc cacttctgat tcagtttgtg ggtttgtaag cccaatagtg 1451 ctccttgaag cccatgaatc acctggttgt aattcaattg ggcctgttag 1501 tccaattctt gacaatgatc tggacctcaa cgttttcctc tcccattttc 1551 cgtagtccac atgggagaaa tcaacatctc tatgtgaaaa ttgtttggag 1601 tgaattttca ctgttggtgc ccggaagggt atatccactg aatgtttagc 1651 tgttgacaat ttcaatttcc ctttaaactt ggcaaaatgt gttcgttgat 1701 gcacattcgt gtcgctaacc ctgtaataga gtttccacgg aatagggtct 1751 tttagcgaga agaatgaaga tgaaaaatag tggagatcta tgttgcatct 1801 taagggaaat gtccaagacg cctgtaagga ttcatcgtca gtcatcctct 1851 tatcatggat ctctacaatc accgtcccgg ttgcgttaat tggtacttgc 1901 tgtctatatt cgatgacgca atggtcgatt ttcatacagc tacgattaag 1951 ccttgctgta aattgcgctg cagttgaagg gaattgcagt actatttcag 2001 taagatcatg acatagctga tattcgtctc tatgagactc tatgtaatta 2051 aacgcatttg gagcatttgc tagctgagaa tccatctata gaaatctgcc 2101 cgcgcagcgg cagaggcttc aataatatct gggttcaaga ataattgtgt 2151 tgaagaacac aacaatgaaa cgacttgttt cacaaggagg aagagagaat 2201 atctgggctt gttaacaaga agaaaataat gatattttaa aggaatgatg 2251 aatatgttat gttattccga taacatgagt ataataatct aagtccacct 2301 tgtttatata gagagtgatt ttccagaagt tggaaacgcc ttgaatttcc 2351 ttttagtggc attattgtaa atatgggtgt tcccccgata gcgctctcgc 2401 tcaaaactcc tatgaattgg gggaactggg ggaacttata tagtagaagt 2451 tcctaaaggc aaatcaacac gtggcggcca tccgttataa tatt