Sequence of DPV Arabis mosaic virus large satellite RNA

Arabis mosaic virus isolate J86 satellite-encoded protein mRNA, complete cds.

ACC No: DQ187316

Dated: 2006-02-18 | Length: 1139 | CRC: 221726430

                
ID   DQ187316   standard; mRNA; VRL; 1139 BP.
XX
AC   DQ187316;
XX
SV   DQ187316.1
XX
DT   18-FEB-2006 (Rel. 86, Created)
DT   18-FEB-2006 (Rel. 86, Last updated, Version 1)
XX
DE   Arabis mosaic virus isolate J86 satellite-encoded protein mRNA, complete
DE   cds.
XX
KW   .
XX
OS   Arabis mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Comoviridae;
OC   Nepovirus; Subgroup A.
XX
RN   [1]
RP   1-1139
RA   Wetzel T., Bassler A., Amren M.A.W., Krczal G.;
RT   "A RT/PCR-partial restriction enzymatic mapping (PREM) method for the
RT   molecular characterisation of the large satellite RNAs of Arabis mosaic
RT   virus isolates";
RL   J. Virol. Methods 132(1-2):97-103(2006).
XX
RN   [2]
RP   1-1139
RA   Wetzel T., Bassler A., Wahab A.M.A.B., Krczal G.;
RT   ;
RL   Submitted (30-AUG-2005) to the EMBL/GenBank/DDBJ databases.
RL   AlPlanta - Institute for Plant Research, RLP Agroscience GmbH, Breitenweg
RL   71, Neustadt an der Weinstrasse 67435, Germany
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1139
FT                   /db_xref="taxon:12271"
FT                   /mol_type="mRNA"
FT                   /organism="Arabis mosaic virus"
FT                   /isolate="J86"
FT                   /specific_host="grapevine 'Riesling'"
FT   CDS             15. .1064
FT                   /codon_start=1
FT                   /product="satellite-encoded protein"
FT                   /protein_id="ABB03713.1"
FT                   /translation="MALTQRRKQPSLTHSPRVPTELLVPTEYARLFSKKQLERMLALAC
FT                   KHRARQAAQAVSKRTSRDRNGSKIMGQGPSAVAPRVSLGHKQQFDGGASLTPMKSKRAV
FT                   RRARRRAAAKKAKAKTGTLPVQKVGPLRVQAVGFTGRASYLSSLVLGTSHSKTKMEVVS
FT                   SPPQTKRAPIVDKGAFTLTSITPAECRERAGRNFHPITGSFRSANVALNAFCVRSREGC
FT                   GECKACVDRYCSLRFVRSFDQIGTSRVIQVEAVNGDPAGEMDSPSATEPPGFWAPAEMQ
FT                   APSGEGRSLKRCDVVTLARVTPVLRMLRRADPTLVDSKLLWESAFRTVFPQRKCAYPYG
FT                   CFASGSNCG"
XX
SQ   Sequence 1139 BP; 248 A; 286 C; 335 G; 270 T; 0 other;

dq187316 Length: 1139  18-FEB-2006  Type: N  Check: 6524  ..

       1  atgaaaaatt ttctatggct cttacgcaac ggcggaagca gccatctttg
      51  actcactcac caagagttcc tacggaactc ttggtaccta ccgagtatgc
     101  tagactgttt tccaagaaac agctcgagcg catgctcgca ttggcgtgta
     151  agcaccgtgc acgtcaagct gctcaggcag taagtaaacg gacctcccga
     201  gaccgaaatg ggagtaaaat aatgggtcag ggtccttctg ctgtggcccc
     251  gcgagtgtcg cttggacaca aacagcagtt cgacggaggg gcgagtctaa
     301  ccccaatgaa gtcaaagcgt gcggtgcggc gtgcaaggcg ccgtgctgcc
     351  gctaaaaagg cgaaagccaa gaccgggacc ttacccgtac aaaaggttgg
     401  gccattgcgt gtccaagctg tggggttcac gggccgggcg agttatttgt
     451  ctagcctggt tttggggact tcccacagca aaaccaaaat ggaggtggtg
     501  agctcacctc cccaaacaaa aagagctccc atcgtcgata agggtgcttt
     551  tacccttact tctatcacac cggctgagtg ccgggagagg gctgggcgca
     601  atttccaccc cattacgggt tccttccgat ctgcgaatgt ggcccttaat
     651  gcgttttgcg tccgctctcg tgagggatgc ggcgagtgca aggcctgtgt
     701  ggacaggtat tgctccctgc ggttcgtcag gagctttgat cagattggca
     751  cttcgcgtgt catccaggtc gaagctgtga atggcgatcc agccggagag
     801  atggatagcc ctagtgctac ggaacctcct gggttctggg ctcctgcaga
     851  aatgcaggct ccttcgggag aggggcgatc ccttaaaagg tgcgatgtgg
     901  tgacactcgc acgcgtgaca cccgttttac ggatgttacg tagagctgac
     951  cccactcttg tggacagcaa acttttatgg gaatccgctt tccggacggt
    1001  ttttcctcag cgcaagtgcg cgtatcctta tggttgcttc gcgagtggga
    1051  gtaactgtgg gtagggaaaa ctgaaggtgg gacttcgttt gtttatagtc
    1101  tggcgtaagc tgggattttg gttgctcatt agtcaactc