Sequence of DPV Arabis mosaic virus large satellite RNA

Arabis mosaic virus isolate P119 satellite-encoded protein mRNA, complete cds.

ACC No: DQ187319

Dated: 2006-02-18 | Length: 1104 | CRC: 2085032292

                
ID   DQ187319   standard; mRNA; VRL; 1104 BP.
XX
AC   DQ187319;
XX
SV   DQ187319.1
XX
DT   18-FEB-2006 (Rel. 86, Created)
DT   18-FEB-2006 (Rel. 86, Last updated, Version 1)
XX
DE   Arabis mosaic virus isolate P119 satellite-encoded protein mRNA, complete
DE   cds.
XX
KW   .
XX
OS   Arabis mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Comoviridae;
OC   Nepovirus; Subgroup A.
XX
RN   [1]
RP   1-1104
RA   Wetzel T., Bassler A., Amren M.A.W., Krczal G.;
RT   "A RT/PCR-partial restriction enzymatic mapping (PREM) method for the
RT   molecular characterisation of the large satellite RNAs of Arabis mosaic
RT   virus isolates";
RL   J. Virol. Methods 132(1-2):97-103(2006).
XX
RN   [2]
RP   1-1104
RA   Wetzel T., Bassler A., Wahab A.M.A.B., Krczal G.;
RT   ;
RL   Submitted (30-AUG-2005) to the EMBL/GenBank/DDBJ databases.
RL   AlPlanta - Institute for Plant Research, RLP Agroscience GmbH, Breitenweg
RL   71, Neustadt an der Weinstrasse 67435, Germany
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1104
FT                   /db_xref="taxon:12271"
FT                   /mol_type="mRNA"
FT                   /organism="Arabis mosaic virus"
FT                   /isolate="P119"
FT                   /specific_host="grapevine 'Zirock'"
FT   CDS             14. .1030
FT                   /codon_start=1
FT                   /product="satellite-encoded protein"
FT                   /protein_id="ABB03716.1"
FT                   /translation="MDFRANADSSLHSPRVSVEILVPTKYAKLFTLKQLTRMLALSCKH
FT                   RARQAVNPVSKRTSRDRNGSKTMGQGPPAVGPQVSKGHKQQFDGGASLAPVKSKRAARR
FT                   EKRRAAAKKAKAKAETTLVKKGGLSVHTPMRPERATYLSSLLSKSIGVKPKMGTLSKSP
FT                   QTKNAPRVNEGGFTLTSISPAECREESNRRFHPITGTFMGTQGFCLRSRERCGSCAACE
FT                   SRSAQLGFDRSFDMIGTSRVLRVGSMKKETSDDMASPSATEPAGFWAPAEKQAPREGRP
FT                   IKRCDVVTLARVVPVLRMLRKVDPTFVDNRLLWEAAHQTVFPQRKCAYPVGCFGDHW"
XX
SQ   Sequence 1104 BP; 248 A; 281 C; 311 G; 264 T; 0 other;

dq187319 Length: 1104  18-FEB-2006  Type: N  Check: 8755  ..

       1  atgaaaaatt tctatggatt ttcgtgctaa cgcagattca tctttacact
      51  ctcccagggt ctccgttgag attctggtcc ctaccaagta tgcgaagttg
     101  tttaccctta agcaactcac tcgcatgctt gcattgtcgt gtaagcaccg
     151  tgcacggcaa gccgttaatc cggtaagcaa acggacctcc cgagaccgaa
     201  atgggagtaa aacaatgggt cagggacctc ctgctgtggg cccgcaagtg
     251  tcgaagggac acaaacagca gtttgatgga ggggctagcc tagccccggt
     301  gaagtcaaag cgtgcagcgc gccgtgaaaa gcgacgcgct gccgctaaaa
     351  aggcgaaagc caaggccgag accacactcg ttaaaaaggg tgggcttagt
     401  gtccacaccc cgatgaggcc ggagcgggcg acttatttgt ctagcttgct
     451  ttcgaaatca atcggggtaa aacccaaaat ggggactctg agcaagtccc
     501  cccaaacaaa aaatgctccc agagtcaacg agggtggttt caccctcact
     551  tctatctcac cggctgagtg tcgggaggag tccaatcgga gatttcaccc
     601  cataactggt actttcatgg gtacccaggg gttctgcttg cgctcccgag
     651  agcgttgtgg ctcttgcgcg gcttgtgagt ccaggtcagc gcaactcggt
     701  tttgatcgga gtttcgacat gattggcact tctcgtgtcc ttcgtgtcgg
     751  ttcaatgaag aaagaaacct ctgatgatat ggccagtcct agtgctacag
     801  agcctgctgg gttctgggct cctgctgaaa agcaggcccc tcgggaggga
     851  cgccccataa aaaggtgcga tgtggtgaca ctcgcacgcg tggttccggt
     901  tctccggatg ctgcgtaagg ttgatcccac ttttgtggac aaccggctat
     951  tatgggaggc cgcacatcag acagtttttc ctcagcgcaa gtgcgcgtat
    1001  ccggttggtt gctttggcga tcactggtag ggaaggctgc tgtgggacat
    1051  cgtttgttta tagtctcacg caagtgggga ttttggttgc tctttagcca
    1101  actc