Sequence of DPV Cucumber leaf spot virus
Cucumber leaf spot virus, complete genome.
ACC No: DQ227315
Dated: 2007-01-31 | Length: 4433 | CRC: 1855562465
ID DQ227315; SV 1; linear; genomic RNA; STD; VRL; 4433 BP.
XX
AC DQ227315;
XX
DT 02-MAR-2006 (Rel. 87, Created)
DT 31-JAN-2007 (Rel. 90, Last updated, Version 2)
XX
DE Cucumber leaf spot virus, complete genome.
XX
KW .
XX
OS Cucumber leaf spot virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Aureusvirus.
XX
RN [1]
RP 1-4433
RA Rosner A., Lachman O., Pearlsman M., Feigelson L., Maslenin L.,
RA Antignus Y.;
RT "Characterisation of cucumber leaf spot virus isolated from recycled
RT irrigation water of soil-less cucumber cultures";
RL Ann. Appl. Biol. 149(3):313-316(2006).
XX
RN [2]
RP 1-4433
RA Rosner A., Lachman O., Pearlsman M., Maslenin L., Antignus Y.;
RT ;
RL Submitted (29-SEP-2005) to the EMBL/GenBank/DDBJ databases.
RL Virology, ARO, The Volcani Center, Bet Dagan 50250, Israel
XX
FH Key Location/Qualifiers
FH
FT source 1. .4433
FT /organism="Cucumber leaf spot virus"
FT /mol_type="genomic RNA"
FT /country="Israel"
FT /virion
FT /db_xref="taxon:165432"
FT 5'UTR 1. .141
FT gene 142. .2349
FT /gene="P84"
FT misc_feature 142. .2349
FT /gene="P84"
FT /note="nonfunctional P84 protein due to mutation;
FT replication"
FT gene 142. .801
FT /gene="P25"
FT CDS 142. .801
FT /codon_start=1
FT /gene="P25"
FT /product="P25 protein"
FT /note="replicase"
FT /db_xref="InterPro:IPR013707"
FT /db_xref="UniProtKB/TrEMBL:Q283N2"
FT /protein_id="ABD51792.1"
FT /translation="MVLSCLVTLILFPFTTMSALYSLVCRIVNMMLGEIAYLYGDVKAG
FT LSFLLRKLTTSWIIVVGMILVLSFTVVGVMPSITLYSIILLCIGSKYGGRLPRYIVAHY
FT ERIKEAWEKGVDDDDCTATPPVDCMERVPHKLRPRLACKIAVRAVAKVGLLKRSEANAL
FT VYQRVCLDIMESMKMRWHDRLMVLPQAVLALLERPEEVEEVMKAIEASCKGRFDEF"
FT gene 2375. .3535
FT /gene="CP"
FT CDS 2375. .3535
FT /codon_start=1
FT /gene="CP"
FT /product="coat protein"
FT /note="capsid protein; transmission and systemic movement"
FT /db_xref="GOA:Q283N1"
FT /db_xref="InterPro:IPR000937"
FT /db_xref="UniProtKB/TrEMBL:Q283N1"
FT /protein_id="ABD51793.1"
FT /translation="MEIARTNKNSIVKYVPAAVGAAYQMGKSIVPYAPTIVDALGNVVS
FT RATGRKKKNKGKGVQNQIVGGIGAIAAPVSITKRVRGMRPSFKQTKGKVHIVHRELVTS
FT VINLVGNFRVNNNVSAQIGQFRINPSNSSLFTWLPTIASNFDSYRFTSIRFVYVPLCAT
FT TETGRVSLFWDKDSQDPLPVDRAALSSYGHSNEGPPWAETILNVPIDGKQRFVTDSNTT
FT DRKLVDLGQFAFATYAGGSNNQIGDIYVEYGVEFSEAQPAGGLTQYITKSVGATAFTTG
FT PSYVVDANINVNATTANVEFFSPGTFLITAVVFGSTIASPSMAGGNGTLIGDRPVVGGS
FT NASIWTCVFSTTGVSTSVPTFTQAGTGLTRVQYPITRVNSQTAYQV"
FT gene 3616. .4347
FT /gene="P27"
FT CDS 3616. .4347
FT /codon_start=1
FT /gene="P27"
FT /product="P27 protein"
FT /note="cell to cell movement"
FT /db_xref="GOA:Q283N0"
FT /db_xref="InterPro:IPR005332"
FT /db_xref="UniProtKB/TrEMBL:Q283N0"
FT /protein_id="ABD51794.1"
FT /translation="MEIQHIDGTFEDSLIVQNEVKKFLISHKTTKAILPLAPYSQLTKW
FT KIPKAGFYAPIDVKFVLTPHVSERAQVRGVVKLVDSRDLSPSRELYRSKEFNIGHGLLI
FT EGSQLPFCLPVGDYPLQFEVTVLQSQFKETANLYSTSVEWRMMSSTTPLSRVKSVMGAA
FT HQPAMKLEPNFKMKLESSKGVSHNQKQRKITKPNGLDRRGRGNSTVGGSSDASQSQGAQ
FT AWGGYHNDLGDSLSEYSVSDL"
FT gene 3747. .4205
FT /gene="P17"
FT CDS 3747. .4205
FT /codon_start=1
FT /gene="P17"
FT /product="P17 protein"
FT /note="symptom modulation"
FT /db_xref="UniProtKB/TrEMBL:Q283M9"
FT /protein_id="ABD51795.1"
FT /translation="MENTQGGVLCPNRCKVCSHTTCIRESSGQGGRQASRFTRLVTEPR
FT IVSEQGIQYRTWIADRGFPIALLSSSGGLSTSIRGHGVAVTVQGDSKSLLNFCRVAYDV
FT FNHPVIQSEVCYGRGPSTSDEVRAEFQDEAGIIQGRLPQSETEENNKT"
FT 3'UTR 4348. .4433
XX
SQ Sequence 4433 BP; 1179 A; 927 C; 1144 G; 1183 T; 0 other;
dq227315 Length: 4433 31-JAN-2007 Type: N Check: 2786 ..
1 gaatacccta ctagaccgtc tacccagcgt gtctgagagt tgcgtagcca
51 tacgtatagg tattctctcc taattcaggg gtttgaagac tgggtctagc
101 ttaacagcgg ataaattgta acttccagta aaatggcaaa catggtccta
151 agttgcttgg ttactctgat actttttccg ttcacaacta tgtcagcatt
201 gtattctctt gtttgcagga ttgtgaacat gatgttgggt gagattgcgt
251 acctttatgg ggatgttaag gctgggttga gcttcctctt gaggaagctc
301 accacctctt ggataatcgt tgtgggcatg atactggtat tgtcattcac
351 tgtcgtgggg gttatgccat ccatcacctt gtacagcatt attttgctgt
401 gcatagggag taaatatggt ggaaggctgc cacgatacat agttgcccat
451 tatgagcgga ttaaggaagc gtgggagaaa ggggttgatg atgatgactg
501 tacagccaca ccacctgtgg actgcatgga aagggtacca cacaaattac
551 gcccacggct cgcatgcaag attgctgttc gtgctgtggc gaaagtggga
601 ctattgaaac ggtctgaagc taacgccctt gtttatcaac gggtctgtct
651 agacattatg gagagcatga agatgaggtg gcacgaccgt ctgatggtcc
701 tacctcaagc cgtgctagcc ttgctagaaa ggccggagga agtcgaggaa
751 gttatgaaag ccattgaggc gtcctgtaaa ggacgcttcg atgagtttta
801 ggggtgccta ctagaacatc gtggttacaa cacggccgtc cacagtgtca
851 tacctgatgg agtgttgttg aatcacgaag ggatggtggt tcgaagagga
901 ctgcccctat catgtgagcg gaaatggtac tctttctcta gttatgctag
951 cacttatgag tacattgtgc acaattcttc actcgttaat gtttgtagag
1001 gtctggttga acgagtgttt tgcgtcgtgc gagacggtaa attgcagcgt
1051 cctctaagac ctagaaagaa tatctttgag aggaagcttg gtgatgttgg
1101 tcgtaaaatc agctctattg ttgggttctg ccccgctatg acacgcagtg
1151 aattctgtga atcttatagc ggctcgcgaa gagccacgta tgagaaagcg
1201 cgattgtcct tggatgttct cccttgcact agatctgatg cctatcttaa
1251 gacatttgtg aaagcggaga agatcaacat taccttgaaa ccagacccag
1301 cacccagggt catacagcca cgtgacccta ggtacaatgt ggaagtggga
1351 cgttacttga agccgctgga gccccggttg atgaaagcaa ttgataaatt
1401 gtggggggaa aagacggcaa ttaaggggta tactgttgag aaggtaggag
1451 agatcctgta cgagaagagt ttgaggttca aagaacctgt ctttgtggga
1501 cttgatgcta gccggtttga ccagcattgc tcacggcagg ctttggagtg
1551 ggaacactcc gtgtataact ctattattcg tgatccctac cttaaggagt
1601 tgctgacatg gcaaattgat aatgtgggaa ctgcgtattt aaaggatggc
1651 tttgtacgat atcgtgtcga tggttgcagg atgtctggtg atatgaacac
1701 cagcatgggg aactatctaa ttatgtcatg ccttgtatat caattttgta
1751 aggatgttgg gctagatgcc agcctcgcaa attgcgggga tgactgtgtc
1801 ttatatctgg agaaaaagca gttaccattg ctcaagcacc tcccaaattg
1851 gttcgaatcc atgggctatt ctatgaaagt ggaaaaaccc gtgtacaatg
1901 tggaggaaat tgagttttgt caacaacacc ccgttcagct cagcagaggg
1951 tgggtaatgg ttaggaggcc tgatgtctgt ttaacaaaag atgtgtgtat
2001 tgtccgagga gggatgacaa ctgatcgtct tcagaggtgg ttgtatgctc
2051 aacgtgatgg gggtctcagc ttagcagggg actgtcccgt tctagggcag
2101 ttttacaact cttttccccg aggcgagtcc tcaggggagt tgtcagaata
2151 cgccgaagca cacaaattta aggccggtaa gcaatatggc gaaattactc
2201 cattgtcgag gtattctttt tggttggcat ttgggttaac acctgatgat
2251 cagctagcca ttgaggagga tctcaaacat tggacacctg aggtgaagtt
2301 gggaagcgag gcccctcgca caactttgct ggactattgc tcaagataac
2351 tgaccattat caagtgagag aagtatggaa atagcgcgaa ctaataagaa
2401 cagtattgtg aaatatgtgc ctgcagcagt aggagctgcc tatcaaatgg
2451 gcaagtccat agtaccctat gcaccaacga ttgttgatgc attaggcaac
2501 gtggtatctc gagcgacagg gcgtaaaaag aaaaataagg gaaagggagt
2551 acagaatcaa attgtaggtg gtataggggc aattgcagcc cctgttagca
2601 ttactaaacg tgtgcgagga atgaggcctt catttaaaca aaccaaaggg
2651 aaagtccaca ttgtgcatcg tgagctcgtt accagtgtca ttaacctggt
2701 tggtaacttt cgggttaaca ataacgtgag tgcacagata gggcaattcc
2751 gtattaatcc ctctaattcc tccttgttca cttggttacc aaccatagca
2801 tcaaatttcg actcatatag gttcacatca atcaggtttg tttatgtgcc
2851 actatgtgct actactgaaa ctggtagggt gtcattgttc tgggataaag
2901 attcacagga cccacttcca gttgacagag ccgctctaag ttcctacgga
2951 cattcaaacg aaggtcctcc atgggcagaa actatactca atgtgccaat
3001 cgatggtaag caacgttttg tcaccgactc aaatacgact gatcgtaagt
3051 tggttgacct gggccagttt gcttttgcca cttatgcagg aggtagtaat
3101 aaccaaattg gagacatata tgttgaatat ggggtagagt tctctgaggc
3151 gcaaccagcc ggtggtttaa cgcaatatat tacaaaatct gttggagcta
3201 ctgctttcac cactggacct agttatgtcg tagatgctaa catcaatgtt
3251 aacgccacaa cagcgaatgt cgaattcttt tctcctggga ctttccttat
3301 aaccgccgtc gtcttcggat ccacaatagc ttcgccttcc atggcaggag
3351 ggaatggcac cttaatcggt gaccgcccag ttgtaggagg atcgaatgct
3401 tctatttgga cctgcgtgtt tagcaccacg ggcgtctcca ctagtgtccc
3451 aacgtttaca caggcgggca caggcttaac tcgggtgcag tacccgatca
3501 cccgtgtaaa ttcacaaact gcgtatcaag tttaagggcg aaagtaggtt
3551 ggtgtcgcag acttggcaat gcccgagttt agaccttgtg tggctcaaga
3601 agtcttacca gcttcatgga aattcaacat attgacggaa cttttgagga
3651 ctcattgatt gttcaaaacg aggttaaaaa gtttctaata tctcataaga
3701 caaccaaagc catactacca ttagctccct actctcaact cactaaatgg
3751 aaaataccca aggcggggtt ctatgcccca atagatgtaa agtttgttct
3801 cacaccacat gtatcagaga gagctcaggt caggggggtc gtcaagctag
3851 tcgattcacg agacttgtca ccgagccgag aattgtatcg gagcaaggaa
3901 ttcaatatcg gacatggatt gctgatagag ggttcccaat tgcccttctg
3951 tcttccagtg ggggattatc cacttcaatt cgaggtcacg gtgttgcagt
4001 cacagttcaa ggagacagca aatctctact caacttctgt cgagtggcgt
4051 atgatgtctt caaccacccc gttatccaga gtgaagtctg ttatgggcgc
4101 ggcccatcaa ccagcgatga agttagagcc gaatttcaag atgaagctgg
4151 aatcatccaa gggcgtctcc cacaatcaga aacagaggaa aataacaaaa
4201 cctaatggcc tagatcggag gggtcgtggt aacagcaccg ttggtggttc
4251 ttcggatgct tctcagtccc aaggcgcaca agcatggggg ggttaccata
4301 acgatctagg agacagttta tccgagtact ctgtgtctga cctgtagaga
4351 gaccaccaat gcacaccaga aatgggggct atgagtgtat tggttaattt
4401 catttcatcc cttgcgtgga aacacgctag ccc