Sequence of DPV Giardia lamblia virus
Giardia canis virus from China, complete genome.
ACC No: DQ238861
Dated: 2009-09-13 | Length: 6276 | CRC: -190152518
ID DQ238861; SV 1; linear; genomic RNA; STD; VRL; 6276 BP.
XX
AC DQ238861;
XX
DT 03-NOV-2005 (Rel. 85, Created)
DT 13-SEP-2009 (Rel. 102, Last updated, Version 3)
XX
DE Giardia canis virus from China, complete genome.
XX
KW .
XX
OS Giardia canis virus
OC Viruses; dsRNA viruses; Totiviridae; Giardiavirus.
XX
RN [1]
RP 1-6276
RX DOI; 10.1016/j.vetpar.2006.07.029.
RX PUBMED; 16982153.
RA Chen L., Li J., Zhang X., Liu Q., Yin J., Yao L., Zhao Y., Cao L.;
RT "Inhibition of krr1 gene expression in Giardia canis by a virus-mediated
RT hammerhead ribozyme";
RL Vet. Parasitol. 143(1):14-20(2007).
XX
RN [2]
RP 1-6276
RX PUBMED; 19619539.
RA Cao L., Gong P., Li J., Zhang X., Zou X., Tuo W., Liu Q., Wang Q.,
RA Zhang G., Chen L., Li L., Su L.;
RT "Giardia canis: ultrastructural analysis of G. canis trophozoites
RT transfected with full length G. canis virus cDNA transcripts";
RL Exp. Parasitol. 123(3):212-217(2009).
XX
RN [3]
RP 1-6276
RA Chen L., Li J., Zhang X.;
RT ;
RL Submitted (12-OCT-2005) to the EMBL/GenBank/DDBJ databases.
RL Department of Veterinary Preventive Medicine,College of Animal Science and
RL Veterinary Medicine, Jilin University, 5333 Xian Road, Changchun, Jilin
RL 130062, China
XX
FH Key Location/Qualifiers
FH
FT source 1. .6276
FT /organism="Giardia canis virus"
FT /strain="Changchun"
FT /mol_type="genomic RNA"
FT /country="China"
FT /db_xref="taxon:353633"
FT CDS join(367. .2808,2808. .5981)
FT /codon_start=1
FT /ribosomal_slippage
FT /product="gag-pol fusion protein"
FT /db_xref="GOA:Q307I8"
FT /db_xref="InterPro:IPR001795"
FT /db_xref="UniProtKB/TrEMBL:Q307I8"
FT /protein_id="ABB36743.1"
FT /translation="MVWGTGYGNTSPLNPYGFASLHRGGLNPLIFLAPENITFDTLNTQ
FT NDHEETYGESPEVPKASIAPAGRQNVPVLQQKQENEDNHALGGSEDAKDEREIQFSAIK
FT TLYNYYSEGPSIPIMPHLVNRLRGLVALAKVDATLSKVDMNAAYIFPLRPTFPYSYGYK
FT QRFTNRRLSTSALCYARTGLSSFLTVDKTYTSNSPLKGGSRGWPIFNIGVSPHVAEPHM
FT RTLSPIGLEVFNLATSQFSKTLLTASSKVFTQSLYTADILSIFGEVFLPHVMQPVSNYP
FT PILVRALLALIHILGPGSGNCSLSSSIFESSIPQFLTISHSTNMSNRTRYCLHTWSAYK
FT DMFRIGIPPHSTFPPTLAPEGSSARILIPAALVTSPMFPWLLVLVSSGPQFFLYSKDAS
FT INTVDIGSRGRITSPISDVAHLDLHRLWNLFRFDGYRYIDVVIVGVGRDYVWPYQNGVY
FT VHGGKGPKGTDNYENADVHDGIGTIFSSFNNNVNVQTSDLLLGLSTLWNHIATTYATEE
FT EVTMAIKIAAAFALVYPVQPIVYSGCSSAFHNHTSYFQPSSENCYTTDTAEVKSTWDTV
FT ELSVQLNDAMVLGMTLPFGQPTVSSARWFNNIDKAEISMFKVGNLPLQKLVYLSLDMME
FT FYAPTTGQLYDIRSDNLISSAHRTVNLGIGYTAVADFFAYLASVPAQSFYHDRMVTSPI
FT SKQAYSVYERFIERFIDDFVGWGRCDLFNLDTLLHAKHIVGVPSSLIPWHCSLQRCALP
FT IIMHYTGQHFGQEHITVRDVAGVQGLQQIVLRNDQGSIVLDALGTAARSRLAVKLDWSK
FT LGCLVLRYNLRHPFIGSCDGDRQLRSNMGSYAGKTRTGFVYTYFSPNFLSSFNVSEPIF
FT HKAINLTPRYDDTSQTVIQNMSMPQMLSFDPYYESTFYVVSADNEWIPTSGPAWKVPYL
FT ENVVKRSGRRLLAELRIASNNGSGDRTFLTTCKTRKGRHYAYFSAALGGKILEFVCAPL
FT SSISLQGGQTIYAPIQLQDAIPVRREDPVPGSIYAVFKFFSEPKAWEIRALKSYKVRFQ
FT DLPSHIVISELKERAARSYIGSRGYVDTGFKGLDIYIDILSQMELPKYIHELLVLLRGK
FT VCEVSRLYKKEQVFIILLTVFSELTAIVRHRGNKSTGSMGRMCTLLSDFETLLGKVSYK
FT NRSIIEEQVVPWLTSDPIPRTPDFYSTYFKMAVQFMHSTFVPVTLRSAPPLTFYEYCAR
FT SELWGTTGSGYIGYGKRSFNKWSIYGAYPTEEIYRXALYGDNPPLKPLEKPELTKVRAV
FT ISASFQSYILMSYLEYIMADTLVDKAFTTTLMNDRQYENLERHMMTMTGGVRVPVDQSN
FT FDRQPDLVQIGIWQQLLFHLASASAPYRARDSVSLVISRLASTTTFPNLKVRMSDGDKR
FT VLDGLPSGWKWTALLGALINVTQLLTMAELSNTLASLRSTVVQGDDIALSMTDREQATQ
FT LVDTYARQGLEVNPKKFWISPDRDEFLRRVATPGIVAGYPARMMIKLLYQLTEPEEPSH
FT YISMLPKLAKVPNMVREYVSPRSDVPWSETVEELDWREALAILRHRPARTSELVTQWLQ
FT LIGRFTAAHPDKRALTLLYHWFVRDLTHATKIKKRNLLVLLQQPGFWGGYSQSLVGLLR
FT TTHLADMIVSELDIGLPGPRATSNRFGTSPTSLAPHYLTLIVPSSVHVQSQKELDLWGL
FT CRSSIYAKHYSNIFRYYKLTLPTLVLWAQRLGDKHVTDFIRSVTLGSEIPKYDPHTRLF
FT TSNGVSVGTLIRIRVRHFTHRVLRRETPKCIPVIVGLYREQTLSVPESVRLSEPDKILS
FT SLQRASGYSLSLVKKILQITRKPVDHPVDARFSQAFPNNWSDLARTAGTFLLTVPA"
FT CDS 367. .3030
FT /codon_start=1
FT /product="capsid protein"
FT /db_xref="UniProtKB/TrEMBL:Q307I7"
FT /protein_id="ABB36742.1"
FT /translation="MVWGTGYGNTSPLNPYGFASLHRGGLNPLIFLAPENITFDTLNTQ
FT NDHEETYGESPEVPKASIAPAGRQNVPVLQQKQENEDNHALGGSEDAKDEREIQFSAIK
FT TLYNYYSEGPSIPIMPHLVNRLRGLVALAKVDATLSKVDMNAAYIFPLRPTFPYSYGYK
FT QRFTNRRLSTSALCYARTGLSSFLTVDKTYTSNSPLKGGSRGWPIFNIGVSPHVAEPHM
FT RTLSPIGLEVFNLATSQFSKTLLTASSKVFTQSLYTADILSIFGEVFLPHVMQPVSNYP
FT PILVRALLALIHILGPGSGNCSLSSSIFESSIPQFLTISHSTNMSNRTRYCLHTWSAYK
FT DMFRIGIPPHSTFPPTLAPEGSSARILIPAALVTSPMFPWLLVLVSSGPQFFLYSKDAS
FT INTVDIGSRGRITSPISDVAHLDLHRLWNLFRFDGYRYIDVVIVGVGRDYVWPYQNGVY
FT VHGGKGPKGTDNYENADVHDGIGTIFSSFNNNVNVQTSDLLLGLSTLWNHIATTYATEE
FT EVTMAIKIAAAFALVYPVQPIVYSGCSSAFHNHTSYFQPSSENCYTTDTAEVKSTWDTV
FT ELSVQLNDAMVLGMTLPFGQPTVSSARWFNNIDKAEISMFKVGNLPLQKLVYLSLDMME
FT FYAPTTGQLYDIRSDNLISSAHRTVNLGIGYTAVADFFAYLASVPAQSFYHDRMVTSPI
FT SKQAYSVYERFIERFIDDFVGWGRCDLFNLDTLLHAKHIVGVPSSLIPWHCSLQRCALP
FT IIMHYTGQHFGQEHITVRDVAGVQGLQQIVLRNDQGSIVLDALGTAARSRLAVKLDWSK
FT LGAWYSDTTCAIPLSDRVMEIVNYAAIWDPTQERRAQVSCTHTLAPTFFRALTCLSLYS
FT TRPSTLHHVTMTRAKL"
XX
SQ Sequence 6276 BP; 1610 A; 1562 C; 1554 G; 1549 T; 1 other;
dq238861 Length: 6276 13-SEP-2009 Type: N Check: 9871 ..
1 ggaaggagtg ccaggccatt accctccgcc cctgcctaac aaaactggct
51 taccagaggc gggggggcgt ggtagacggt atgtctaggt ccagagaaag
101 cggtcgctgt taagccgctg gacttcgcca cgcttacacc atcgagaaca
151 cataagtggt gtaatattat gtgtttggct gcgtgtgtca cgagcacgac
201 ccatggagga atctaaccca ggtggtgttg tgtatgataa ggtacaagcc
251 cgtcaacacc acaggtggag agggacagga gtcccatttc ccctctagaa
301 aacagcagtg gtccgcccct catgccctat gaaacgttag ggggccgaca
351 ctagtgggca agcccgatgg tgtgggggac tggatatggg aacaccagtc
401 cgttaaaccc gtacggcttc gccagcctac accggggggg gcttaatccc
451 cttatttttt tggcacctga aaatattact tttgacactt tgaacacaca
501 gaatgaccac gaggagacct acggagagtc tccagaggtt cctaaggcct
551 cgatcgcgcc tgccgggagg cagaatgtcc cggttctcca acaaaaacaa
601 gaaaacgaag ataatcacgc gctgggcggc agcgaggacg ccaaagacga
651 gcgcgaaata cagttttcag ctattaaaac tctctacaat tattactcag
701 aaggtccttc gatcccaatt atgccacatt tagtcaacag gttacgagga
751 ttagttgctc tagccaaggt agacgcgacg ctgagcaagg tggatatgaa
801 cgcggcctac atattccccc tgagaccgac ttttccgtat tcgtatgggt
851 ataaacaacg tttcactaac aggagattga gcactagtgc gctttgctac
901 gcaaggacag gcctatcctc atttctgaca gtcgacaaaa cgtacacgtc
951 caactctcca ttaaaagggg gctctagagg gtggcccatt tttaacatag
1001 gtgtttcgcc acacgtggcg gagcctcaca tgaggacatt gtcacctatc
1051 ggtcttgaag tattcaatct ggctacttct cagttttcga aaactctatt
1101 aactgcatca tcgaaagtct tcacgcagtc actctacact gctgacatac
1151 tatcgatctt tggtgaggtg ttcctgccac acgtgatgca accggtctca
1201 aactaccctc caatacttgt gagggcgcta ttggccttga tccacatact
1251 ggggccagga tctggtaatt gctcactttc atcgtctatc tttgagagtt
1301 caattccaca attcttaacg ataagccata gtacaaacat gtcgaacaga
1351 acgaggtact gcttacatac atggtctgct tacaaggata tgttcagaat
1401 cggtatccca cctcactcga cgtttccacc gacgctcgcg ccagaggggt
1451 cctctgctcg gattctaatc ccagcggccc tagtgaccag ccctatgttt
1501 ccatggttac ttgtattagt ctcgagcggc ccacagttct tcttgtattc
1551 aaaggacgct agtattaata ccgtagacat cggttcgagg gggaggatta
1601 catcaccaat ctctgacgtc gcccaccttg atctccacag actctggaat
1651 ctcttccgtt ttgatggtta ccgctatatc gacgtggtca tagtgggcgt
1701 aggtagagat tatgtgtggc cctatcaaaa tggcgtgtat gtacacggcg
1751 gtaagggacc caaaggtact gacaactacg agaatgctga cgttcacgac
1801 ggaataggga cgatattttc gtcctttaat aacaatgtta acgtgcaaac
1851 gtccgacctc ctgctaggct tatcgaccct gtggaatcac atagcgacta
1901 cgtacgctac tgaggaggag gttaccatgg cgattaagat tgcagcggct
1951 tttgccctcg tctacccagt acagcctatt gtctactctg gctgttcgag
2001 cgcttttcat aatcacacgt catatttcca gccctcatcg gagaactgct
2051 acacaaccga tacggctgaa gtgaagagca cgtgggatac ggtcgagctt
2101 agtgtacagc ttaacgacgc tatggtacta ggtatgacac taccgtttgg
2151 ccaacctaca gttagcagtg cacgatggtt taataacatc gataaggccg
2201 agatctctat gtttaaggtc ggtaatctac cgttacagaa gctcgtttat
2251 ctatctctcg acatgatgga attctacgct cctacgacgg gacaattgta
2301 cgacatacgt agtgataacc tgatctcgag cgcccatagg acggtgaacc
2351 tcggaatagg ctacacagcc gtggcagatt tcttcgccta tctagcttca
2401 gttcctgccc agagttttta ccacgacagg atggtcacct caccgatttc
2451 aaagcaggcg tactccgtct atgaacgttt tattgaacgt tttattgatg
2501 acttcgtggg ctggggcaga tgtgacctgt tcaaccttga tacattgtta
2551 catgcaaaac acatagtcgg ggtaccctca tctctaatcc cgtggcactg
2601 ctcgctacag agatgtgcac tacccataat catgcattac acaggccaac
2651 atttcggcca ggagcatata acagtcaggg acgtcgccgg ggttcaaggc
2701 ttacagcaga ttgtgttgag gaacgaccag ggtagtatcg tactagacgc
2751 cttgggcact gctgcacgat ctagacttgc agtcaaatta gactggtcta
2801 agcttggtgc ctggtactca gatacaacct gcgccatccc tttatcggat
2851 cgtgtgatgg agatcgtcaa ttacgcagca atatgggatc ctacgcagga
2901 aagacgcgca caggtttcgt gtacacatac tttagcccca actttctttc
2951 gagctttaac gtgtctgagc ctatattcca caaggccatc aaccttacac
3001 cacgttacga tgacacgagc caaactgtaa ttcaaaatat gtccatgcca
3051 cagatgctca gcttcgatcc ctactacgag tctacgttct atgtggtctc
3101 cgcggataac gagtggatac cgacttcagg gcctgcttgg aaggtaccat
3151 acctggaaaa cgtagttaag cggtctggca ggcgcttgct ggcggagctc
3201 aggatagcat ccaataacgg gtctggagac cgtaccttct tgacgacgtg
3251 taagacaaga aaaggaaggc attatgccta tttctctgct gctttggggg
3301 gcaagatcct ggaattcgta tgcgctccac tgtcgagtat cagtctccag
3351 ggcgggcaaa cgatctacgc tccgattcag ctccaagacg ccataccagt
3401 acgtagagaa gatccagtgc cagggagcat atacgcagtc tttaagtttt
3451 tctcagaacc aaaggcttgg gagatacgtg cacttaagtc ctacaaagtt
3501 aggttccaag atctcccaag ccacatagtg attagtgagc taaaagagag
3551 agcggcgaga agttatatcg ggtcgagggg ttatgtcgat acaggtttta
3601 agggtttgga catttatata gatattcttt cccaaatgga gctgccaaag
3651 tacatacacg agttattagt tttactcaga ggcaaggtgt gtgaagtttc
3701 gaggttgtac aagaaggaac aggtattcat aatactacta accgtattct
3751 ctgagctcac agccatagtt cgccatagag gtaacaagtc cacggggtcg
3801 atggggagga tgtgtacttt gttatcagac ttcgagaccc tgcttgggaa
3851 ggtgagctat aagaaccgga gtatcattga ggagcaggtt gttccctggc
3901 taacctcaga tcctatacca cgtacccctg atttctactc tacgtatttc
3951 aagatggcgg ttcagtttat gcacagcaca ttcgttcctg tcactctcag
4001 aagtgcccct ccgttaacat tttacgagta ctgtgcgagg tcggagctct
4051 ggggaaccac gggatccggc tacatcggct atggcaagcg cagtttcaac
4101 aaatggtcga tctacggagc ttatcctacc gaggagattt atcggcyagc
4151 actctatgga gataatccac ccctcaagcc gctggaaaaa cccgaactta
4201 cgaaggtacg tgctgtaatc tccgcctctt tccaatcgta catattgatg
4251 tcctacctcg agtacatcat ggcagacacc ttagttgaca aagcattcac
4301 tacaactctg atgaacgaca ggcagtatga gaaccttgag cgccacatga
4351 tgaccatgac cggaggagtc agggttccag tggaccagtc gaattttgat
4401 cgtcagcctg acttggtcca aataggcatc tggcaacagt tactatttca
4451 cctagcatct gcgtcagccc cgtacagggc ccgcgacagt gtctcactag
4501 tcatatcacg tttagcctca actacgacct tcccgaacct aaaggtacgg
4551 atgtcggacg gtgataaacg tgtgctagac ggcctcccct cggggtggaa
4601 gtggactgct ctgctggggg ctctcatcaa tgtgacacaa cttctaacca
4651 tggcggaatt gtccaacact ctggcctcgt tgaggtcaac ggtggtacag
4701 ggcgacgata tcgctctaag tatgactgac cgggagcagg ccacacagtt
4751 agttgacact tatgcacgtc aaggcttgga ggtcaacccg aagaagttct
4801 ggatatcacc cgaccgggac gaattcctcc ggagggtagc aacccctggt
4851 atagtcgcgg ggtacccagc tagaatgatg attaaattgt tatatcagtt
4901 gacggaacct gaagagccct cacactacat ctccatgttg ccaaagctag
4951 cgaaggtgcc taacatggtc cgggagtatg taagcccccg gtctgatgtg
5001 ccatggtcgg agaccgtcga agaacttgat tggcgcgaag ctctcgctat
5051 actgaggcat aggcctgccc gtacatcaga actggtgact caatggctgc
5101 aactgattgg taggtttaca gctgctcatc ctgataagcg agccttaact
5151 cttctttacc attggttcgt gagagacttg acgcatgcta caaaaataaa
5201 aaaaagaaat cttctggtcc tgttacagca gccgggcttc tggggaggtt
5251 attcccagag cctggttggc ttgttaagga ccactcacct cgcagatatg
5301 atagttagcg aactagacat aggactgcca ggtcctcggg ccacgtctaa
5351 tcgctttggg acatccccta cttcactggc cccgcactac ctcactctga
5401 tagttccgag tagcgtgcat gtgcagtcgc aaaaggaact ggatttgtgg
5451 gggctgtgca gatccagtat atatgctaag cactattcaa acatatttcg
5501 atactacaaa ctgactcttc ctacgttggt gctttgggcc caacggctag
5551 gtgataaaca cgtcaccgat ttcattagat ctgtcaccct gggttcagaa
5601 ataccaaaat atgacccgca tacgcgtcta ttcacaagta acggggtgtc
5651 agtaggaacg ttaataagga taagagtacg acattttacc cacagagtgc
5701 ttcgaagaga gacacctaag tgtatccccg taatcgtcgg gctataccgg
5751 gagcagacac tatccgttcc ggagagtgtt cgtctatcgg aacctgacaa
5801 gatactatca agcctacaac gggcgtcggg ttactcactg agtctagtta
5851 agaagatatt acagatcact aggaaaccag tggaccatcc ggtggacgcg
5901 aggttctcac aggcattccc taacaactgg agcgacttgg ctagaacggc
5951 tggcaccttt ttgttaactg taccggctta agaggtttca ggagacaatg
6001 ctagccttgt cgctgagcgt ttgggcttca accatagcag ccggcttgac
6051 gcaattttta ggtcaaggaa atttctcctt tgcctagtag cgtagctgct
6101 caaagaaaag aaaatactag taattactgc acacgatcgg tgggtcggcc
6151 agcatacggt ggtgtgcggt ccgagaacgg gactggcctt agtacggtca
6201 taagacctgg acacgtgtag aaactgtgcc ccctgtagac tccgttgcct
6251 gtaggaggca gcgtacgagg gggtcg