Sequence of DPV Turnip crinkle virus
Turnip crinkle virus isolate RS2_37_3 coat protein (CP) gene, partial cds.
ACC No: DQ286896
Dated: 2005-12-08 | Length: 1050 | CRC: -1570733483
ID DQ286896 standard; genomic RNA; VRL; 1050 BP. XX AC DQ286896; XX SV DQ286896.1 XX DT 05-DEC-2005 (Rel. 86, Created) DT 08-DEC-2005 (Rel. 86, Last updated, Version 4) XX DE Turnip crinkle virus isolate RS2_37_3 coat protein (CP) gene, partial cds. XX KW . XX OS Turnip crinkle virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae; OC Carmovirus. XX RN [1] RP 1-1050 RA Li Y.H., Pallett D.W., Naylor M., Wang H.; RT "Low titer chronic infections maintain polymorphisms in the coat protein of RT Turnip crinkle virus"; RL Unpublished. XX RN [2] RP 1-1050 RA Li Y.H., Pallett D.W., Naylor M., Wang H.; RT ; RL Submitted (10-NOV-2005) to the EMBL/GenBank/DDBJ databases. RL Plant Virology, NERC/Centre for Ecology and Hydrology (CEH), Mansfield RL Road, Oxford OX1 3SR, United Kingdom XX FH Key Location/Qualifiers FH FT source 1. .1050 FT /country="United Kingdom" FT /db_xref="taxon:11988" FT /mol_type="genomic RNA" FT /organism="Turnip crinkle virus" FT /isolate="RS2_37_3" FT gene 1. .>1050 FT /gene="CP" FT CDS 1. .>1050 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /protein_id="ABB89523.1" FT /translation="MENDPRVRKFASEGAQWAIKWQKKGWSSLTSRQKQTARAAMGIKL FT SPVAQPVQKVTRLSAPVALAYREVSTQPRVSTARDGITRSGSELITTLKKNTDTEPKYT FT TAVLNPSEPGTFNQLIKEAAQYEKYRFTSLRFRYSPMSPSTTGGKVALAFDRDAAKPPP FT NDLASLYNIEGCVSSVPWTGFILTVPTDSTDRFVADGISDPKLVDFGKLIMATYGQGAN FT DSAQLGEVRVEYTVQLKNRTGSTSDAQIGDFAGVKDGPRLVSWSKTKGTAGWEHDCHFL FT GTGNFSLTLLYEKAPVSGLENADASDLSVLGEAAAGSVQWAGVKVAERGQSVKMVTTEE FT QPRGKWQALR" XX SQ Sequence 1050 BP; 275 A; 289 C; 291 G; 195 T; 0 other; dq286896 Length: 1050 08-DEC-2005 Type: N Check: 3016 .. 1 atggaaaatg atcctagagt ccgaaagttc gcatccgagg gcgcccaatg 51 ggcgataaag tggcagaaga agggctggtc atccctaacc agcagacaga 101 aacagaccgc ccgcgcagcg atggggatca agctctcccc tgtggcgcaa 151 cctgtgcaga aagtgactcg actgagtgct ccggtggctc tcgcctaccg 201 cgaggtttcc acccagcctc gggtttctac tgccagggac ggcataacca 251 gaagcggttc tgaactgatc acaaccctga agaagaacac tgacactgaa 301 cctaagtaca ccacagctgt gcttaaccca agcgaacccg gaacattcaa 351 ccaactcatc aaggaggcgg cccagtatga aaaataccga ttcacgtcac 401 tcagatttag gtactctccc atgagccctt caaccaccgg gggcaaggtg 451 gctctggcat tcgaccgaga cgccgccaaa cctccgccca acgacctcgc 501 ttccctctac aacatagagg gttgtgtatc tagcgtgccc tggacagggt 551 ttattttgac cgtcccaaca gattctactg accgctttgt ggcggatggt 601 atcagcgatc caaagcttgt cgatttcggc aaactcatca tggccaccta 651 tggccaagga gccaatgatt ccgcccaact cggtgaagtg cgagtcgagt 701 acaccgtgca gctcaagaac agaactggct caaccagcga cgcccagatt 751 ggggacttcg cgggtgttaa ggacggaccc aggttggtct cgtggtccaa 801 gaccaaggga acagctgggt gggagcacga ttgtcatttt ctcggaaccg 851 gaaacttctc gttgacactg ttatacgaga aggcgcccgt ttcggggcta 901 gaaaacgcag acgcctctga cttatcggtc ctgggagaag ccgcagcagg 951 tagtgtccaa tgggctggag tgaaggtagc agaaagggga caaagcgtga 1001 aaatggtcac aactgaggag cagccaaggg gaaaatggca agcactcagg