Sequence of DPV Citrus tristeza virus
Citrus tristeza virus isolate AT9.12 clone CL110 coat protein (p25) gene, complete cds.
ACC No: DQ355046
Dated: 2010-10-31 | Length: 672 | CRC: -32238654
ID DQ355046; SV 1; linear; genomic RNA; STD; VRL; 672 BP. XX AC DQ355046; XX DT 14-MAR-2006 (Rel. 87, Created) DT 31-OCT-2010 (Rel. 106, Last updated, Version 3) XX DE Citrus tristeza virus isolate AT9.12 clone CL110 coat protein (p25) gene, DE complete cds. XX KW . XX OS Citrus tristeza virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae; OC Closterovirus. XX RN [1] RP 1-672 RX DOI; 10.1094/PHYTO-99-11-1297. RX PUBMED; 19821734. RA Roy A., Brlansky R.H.; RT "Population dynamics of a Florida Citrus tristeza virus isolate and RT aphid-transmitted subisolates: identification of three genotypic groups and RT recombinants after aphid transmission"; RL Phytopathology 99(11):1297-1306(2009). XX RN [2] RP 1-672 RA Roy A., Brlansky R.H.; RT ; RL Submitted (04-JAN-2006) to the EMBL/GenBank/DDBJ databases. RL Plant Pathology, University of Florida, 700, Experimet Station Road, Crec, RL Lake Alfred, FL 33850, USA XX FH Key Location/Qualifiers FH FT source 1. .672 FT /organism="Citrus tristeza virus" FT /isolate="AT9.12" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="01-Dec-1999" FT /clone="CL110" FT /note="genotype: T36; PCR_primers=fwd_name: T36CP (+), FT rev_name: T36CP (-)" FT /db_xref="taxon:12162" FT gene 1. .672 FT /gene="p25" FT CDS 1. .672 FT /codon_start=1 FT /gene="p25" FT /product="coat protein" FT /note="ORF7" FT /db_xref="GOA:Q20CM4" FT /db_xref="InterPro:IPR002679" FT /db_xref="UniProtKB/TrEMBL:Q20CM4" FT /protein_id="ABD67148.1" FT /translation="MDDETKKLKNKNKETKEGDDVVAAESSFSSVNLHIDPTLITMNDV FT RQLSIQQNAALNRDLFLTLKGKHPNLPDKDKDFHIAMMLYRLAVKSSSLQSDDDATGIT FT YTREGVEVDLSDKLWTDVVFNSKGIGNRTNALRVWGRTNDALYLAFCRQNRNLSYGGRP FT LDAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGADDIVVTNVRQLGKFNT FT R" XX SQ Sequence 672 BP; 197 A; 125 C; 167 G; 183 T; 0 other; dq355046 Length: 672 31-OCT-2010 Type: N Check: 2291 .. 1 atggacgacg aaacaaagaa attgaagaac aaaaacaagg aaacaaaaga 51 aggcgacgat gttgttgctg ccgagtcttc tttcagttcc gtaaacttac 101 acatcgatcc gactttgata acgatgaacg atgtgcgtca gttgagtatc 151 caacagaacg ctgctttgaa cagagactta ttccttactt tgaaagggaa 201 gcatcctaac ttacctgata aagataagga ctttcacata gctatgatgt 251 tgtatcgttt agcagttaag agttcatcat tacaaagcga tgacgacgcc 301 acgggtataa cgtacactcg ggagggtgtt gaagtggatt tgtctgacaa 351 actttggact gacgtcgtgt ttaactctaa gggtattggt aatcgtacca 401 acgcccttcg agtttggggt agaaccaacg atgcccttta cttagctttt 451 tgcagacaga atcgcaattt gagttatggc gggcgtccgc tagacgcagg 501 gattccggcc gggtatcatt acttgtgtgc ggatttcttg actggagctg 551 gtttgactga tttagaatgt gctgtgtaca tacaagctaa agaacaatta 601 ttgaagaagc gaggggctga tgatatcgta gttactaatg tcaggcagct 651 tgggaaattc aacacacgtt ga