Sequence of DPV Cherry small circular viroid-like RNA

Cherry small circular viroid-like RNA 1 isolate cscRNA1.83, complete genome.

ACC No: DQ357616

Dated: 2006-07-21 | Length: 412 | CRC: -910013398

                
ID   DQ357616; SV 1; circular; genomic RNA; STD; VRL; 412 BP.
XX
AC   DQ357616;
XX
DT   21-JUL-2006 (Rel. 88, Created)
DT   21-JUL-2006 (Rel. 88, Last updated, Version 1)
XX
DE   Cherry small circular viroid-like RNA 1 isolate cscRNA1.83, complete
DE   genome.
XX
KW   .
XX
OS   Cherry small circular viroid-like RNA 1
OC   Viroids; unclassified viroids.
XX
RN   [1]
RP   1-412
RX   PUBMED; 16514498.
RA   Di Serio F., Daros J.A., Ragozzino A., Flores R.;
RT   "Close structural relationship between two hammerhead viroid-like RNAs
RT   associated with cherry chlorotic rusty spot disease";
RL   Arch. Virol. 151(8):1539-1549(2006).
XX
RN   [2]
RP   1-412
RA   Flores R.;
RT   ;
RL   Submitted (10-JAN-2006) to the EMBL/GenBank/DDBJ databases.
RL   Instituto de Biologia Molecular y Celular de Plantas (UPV-CSIC),
RL   Universidad Politecnica de Valencia, Avenida de los Naranjos s/n, Valencia,
RL   Valencia 46022, Spain
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .412
FT                   /organism="Cherry small circular viroid-like RNA 1"
FT                   /specific_host="cherry tree cultivar Imperiale displaying
FT                   symptoms of cherry chlorotic rusty spot disease"
FT                   /isolate="cscRNA1.83"
FT                   /mol_type="genomic RNA"
FT                   /country="Italy"
FT                   /isolation_source="symptomatic leaves"
FT                   /db_xref="taxon:368620"
FT   gene            join(405. .412,1. .45)
FT                   /gene="RZ+"
FT                   /note="hammerhead ribozyme plus"
FT   misc_feature    join(412,1)
FT                   /gene="RZ+"
FT                   /product="RZ+ self-cleavage site"
FT   gene            complement(248. .298)
FT                   /gene="RZ-"
FT                   /note="hammerhead ribozyme minus"
FT   misc_feature    complement(292. .293)
FT                   /gene="RZ-"
FT                   /product="RZ-self-cleavage site"
XX
SQ   Sequence 412 BP; 119 A; 84 C; 97 G; 112 T; 0 other;

dq357616 Length: 412  21-JUL-2006  Type: N  Check: 2693  ..

       1  gtgagatgtg tgtctcgcct gaagaggaca aaagtccgaa acggtatgtt
      51  aatctttcat tttctagctg acagttgtaa gtcggaagaa gtttcttcct
     101  gactgagcca accacggtaa acaaaacctt gcttttgcct gttttccatt
     151  gtgtacaggc ggttaccttt tgaaaggtaa ccacacaggc gcaggtcctg
     201  aaatcgtgac gtggcaataa ctataagcga agaaaaggag aataacaact
     251  atttcgttct tttgaactcg tcagtaggga cacacatccc catatagcgg
     301  tatcttcata cttcagggcc tgcgcctggg gttacttaca caagaagtaa
     351  cattccgtct taaggaagac gggaagcaaa ggttttgttg gtatgagaaa
     401  cctaatgctg ta