Sequence of DPV Cherry small circular viroid-like RNA

Cherry small circular viroid-like RNA 1 isolate cscRNA1.71, complete genome.

ACC No: DQ357617

Dated: 2006-07-21 | Length: 402 | CRC: -999276250

                
ID   DQ357617; SV 1; circular; genomic RNA; STD; VRL; 402 BP.
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AC   DQ357617;
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DT   21-JUL-2006 (Rel. 88, Created)
DT   21-JUL-2006 (Rel. 88, Last updated, Version 1)
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DE   Cherry small circular viroid-like RNA 1 isolate cscRNA1.71, complete
DE   genome.
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KW   .
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OS   Cherry small circular viroid-like RNA 1
OC   Viroids; unclassified viroids.
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RN   [1]
RP   1-402
RX   PUBMED; 16514498.
RA   Di Serio F., Daros J.A., Ragozzino A., Flores R.;
RT   "Close structural relationship between two hammerhead viroid-like RNAs
RT   associated with cherry chlorotic rusty spot disease";
RL   Arch. Virol. 151(8):1539-1549(2006).
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RN   [2]
RP   1-402
RA   Flores R.;
RT   ;
RL   Submitted (10-JAN-2006) to the EMBL/GenBank/DDBJ databases.
RL   Instituto de Biologia Molecular y Celular de Plantas (UPV-CSIC),
RL   Universidad Politecnica de Valencia, Avenida de los Naranjos s/n, Valencia,
RL   Valencia 46022, Spain
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FH   Key             Location/Qualifiers
FH
FT   source          1. .402
FT                   /organism="Cherry small circular viroid-like RNA 1"
FT                   /specific_host="cherry tree cultivar Imperiale displaying
FT                   symptoms of cherry chlorotic rusty spot disease"
FT                   /isolate="cscRNA1.71"
FT                   /mol_type="genomic RNA"
FT                   /country="Italy"
FT                   /isolation_source="symptomatic leaves"
FT                   /db_xref="taxon:368620"
FT   gene            join(397. .402,1. .45)
FT                   /gene="RZ+"
FT                   /note="hammerhead ribozyme plus"
FT   misc_feature    join(402,1)
FT                   /gene="RZ+"
FT                   /product="RZ+ self-cleavage site"
FT   gene            complement(245. .295)
FT                   /gene="RZ-"
FT                   /note="hammerhead ribozyme minus"
FT   misc_feature    289. .290
FT                   /product="RZ-self-cleavage site"
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SQ   Sequence 402 BP; 115 A; 88 C; 98 G; 101 T; 0 other;

dq357617 Length: 402  21-JUL-2006  Type: N  Check: 9376  ..

       1  gtgagatgtg tgtctcgcct gaagaggacg aaagtccgaa acagtaatgt
      51  tagtctccgg ttcctagctg acggttttaa gtcagaagaa gtttcttctt
     101  gactgagcca atcacggtaa acaaaacctt tgctttcctg tcttccttgt
     151  atgacagaag ggttatcatt aagataaccg caggcgcagg acctgaaatc
     201  gtgatgaggc atgaaccata agcgaggaaa gggagaataa caagactatt
     251  tcgttctttt gaactcgtca gtagggacac acatccccat atagcttagc
     301  tcggcatact tcaggaccac acctggtagt cacccgtaca ggtaactctt
     351  cgtctaaagg aagacggaaa gcaggttttg cgatatgccc gagcgtactg
     401  ta