Sequence of DPV Cherry small circular viroid-like RNA

Cherry small circular viroid-like RNA 1 isolate cscRNA1.78, complete genome.

ACC No: DQ357618

Dated: 2006-07-21 | Length: 404 | CRC: -1333461598

                
ID   DQ357618; SV 1; circular; genomic RNA; STD; VRL; 404 BP.
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AC   DQ357618;
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DT   21-JUL-2006 (Rel. 88, Created)
DT   21-JUL-2006 (Rel. 88, Last updated, Version 1)
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DE   Cherry small circular viroid-like RNA 1 isolate cscRNA1.78, complete
DE   genome.
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KW   .
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OS   Cherry small circular viroid-like RNA 1
OC   Viroids; unclassified viroids.
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RN   [1]
RP   1-404
RX   PUBMED; 16514498.
RA   Di Serio F., Daros J.A., Ragozzino A., Flores R.;
RT   "Close structural relationship between two hammerhead viroid-like RNAs
RT   associated with cherry chlorotic rusty spot disease";
RL   Arch. Virol. 151(8):1539-1549(2006).
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RN   [2]
RP   1-404
RA   Flores R.;
RT   ;
RL   Submitted (10-JAN-2006) to the EMBL/GenBank/DDBJ databases.
RL   Instituto de Biologia Molecular y Celular de Plantas (UPV-CSIC),
RL   Universidad Politecnica de Valencia, Avenida de los Naranjos s/n, Valencia,
RL   Valencia 46022, Spain
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FH   Key             Location/Qualifiers
FH
FT   source          1. .404
FT                   /organism="Cherry small circular viroid-like RNA 1"
FT                   /specific_host="cherry tree cultivar Imperiale displaying
FT                   symptoms of cherry chlorotic rusty spot disease"
FT                   /isolate="cscRNA1.78"
FT                   /mol_type="genomic RNA"
FT                   /country="Italy"
FT                   /isolation_source="symptomatic leaves"
FT                   /db_xref="taxon:368620"
FT   gene            join(399. .404,1. .45)
FT                   /gene="RZ+"
FT                   /note="hammerhead ribozyme plus"
FT   misc_feature    join(404,1)
FT                   /gene="RZ+"
FT                   /product="RZ+ self-cleavage site"
FT   gene            complement(246. .296)
FT                   /gene="RZ-"
FT                   /note="hammerhead ribozyme minus"
FT   misc_feature    complement(290. .291)
FT                   /gene="RZ-"
FT                   /product="RZ-self-cleavage site"
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SQ   Sequence 404 BP; 113 A; 90 C; 100 G; 101 T; 0 other;

dq357618 Length: 404  21-JUL-2006  Type: N  Check: 227  ..

       1  gtgagatgtg tgtctcgcct gaagaggaca aaagtccgaa acagtagtgt
      51  tagtctccgg ttcctagctg acggttttaa gtcagaagaa gtttcttctt
     101  gactgagcca atcacggtaa acaaaacctt tgcttacctg tcttccttgt
     151  gtgacagaag ggttatcatt aagataaccg caggcgcagg acctgaaatc
     201  gtgatgaggc atgaacccta agcgaggaac agggagaata acaagactat
     251  ttcgttcttt tgaactcgtc agtagggaca cacatcccca tatagcttta
     301  gctcggcata cttcaggacc gcacctggta gtcacccgta caggtaactc
     351  ttcgtctaaa ggaagacgga aagcaggttt tgcgatatgc ccgagcgtac
     401  tgta