Sequence of DPV Cherry small circular viroid-like RNA

Cherry small circular viroid-like RNA 1 isolate cscRNA1.72, complete genome.

ACC No: DQ357619

Dated: 2006-07-21 | Length: 402 | CRC: -1215575888

                
ID   DQ357619; SV 1; circular; genomic RNA; STD; VRL; 402 BP.
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AC   DQ357619;
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DT   21-JUL-2006 (Rel. 88, Created)
DT   21-JUL-2006 (Rel. 88, Last updated, Version 1)
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DE   Cherry small circular viroid-like RNA 1 isolate cscRNA1.72, complete
DE   genome.
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KW   .
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OS   Cherry small circular viroid-like RNA 1
OC   Viroids; unclassified viroids.
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RN   [1]
RP   1-402
RX   PUBMED; 16514498.
RA   Di Serio F., Daros J.A., Ragozzino A., Flores R.;
RT   "Close structural relationship between two hammerhead viroid-like RNAs
RT   associated with cherry chlorotic rusty spot disease";
RL   Arch. Virol. 151(8):1539-1549(2006).
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RN   [2]
RP   1-402
RA   Flores R.;
RT   ;
RL   Submitted (10-JAN-2006) to the EMBL/GenBank/DDBJ databases.
RL   Instituto de Biologia Molecular y Celular de Plantas (UPV-CSIC),
RL   Universidad Politecnica de Valencia, Avenida de los Naranjos s/n, Valencia,
RL   Valencia 46022, Spain
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FH   Key             Location/Qualifiers
FH
FT   source          1. .402
FT                   /organism="Cherry small circular viroid-like RNA 1"
FT                   /specific_host="cherry tree cultivar Imperiale displaying
FT                   symptoms of cherry chlorotic rusty spot disease"
FT                   /isolate="cscRNA1.72"
FT                   /mol_type="genomic RNA"
FT                   /country="Italy"
FT                   /isolation_source="symptomatic leaves"
FT                   /db_xref="taxon:368620"
FT   gene            join(397. .402,1. .46)
FT                   /gene="RZ+"
FT                   /note="hammerhead ribozyme plus"
FT   misc_feature    join(402,1)
FT                   /gene="RZ+"
FT                   /product="RZ+ self-cleavage site"
FT   gene            complement(246. .296)
FT                   /gene="RZ-"
FT                   /note="hammerhead ribozyme minus"
FT   misc_feature    complement(290. .291)
FT                   /gene="RZ-"
FT                   /product="RZ-self-cleavage site"
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SQ   Sequence 402 BP; 115 A; 81 C; 97 G; 109 T; 0 other;

dq357619 Length: 402  21-JUL-2006  Type: N  Check: 5541  ..

       1  gtgggatgta aaatctcacc tgaagaggac aaaagtccga aacggtatgt
      51  tagtctttat ttctcgctga aagttttaag tcggaagaag tttcttcctg
     101  actgagccag acacggtaga caaaaccttt gctttttccg tattccatag
     151  gaacggacgt tatcttttgt aagataacag caggtgcagg tcctgaaatc
     201  gtgtggtggc gtgaacttta ggcgaagaaa aggagagtaa acataactat
     251  ttcgttcttt tgaactcgtc agtagggaca cacatcccca tatagcggct
     301  tggaatacct caggaccgca cctggtagtc accagtacag gtaactcttc
     351  gtctaaagga agacggaaag caggttttgc tggtattccc aagcttactg
     401  ta