Sequence of DPV Cherry small circular viroid-like RNA

Cherry small circular viroid-like RNA 1 isolate cscRNA1.7O, complete genome.

ACC No: DQ357620

Dated: 2006-07-21 | Length: 402 | CRC: -93525545

                
ID   DQ357620; SV 1; circular; genomic RNA; STD; VRL; 402 BP.
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AC   DQ357620;
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DT   21-JUL-2006 (Rel. 88, Created)
DT   21-JUL-2006 (Rel. 88, Last updated, Version 1)
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DE   Cherry small circular viroid-like RNA 1 isolate cscRNA1.7O, complete
DE   genome.
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KW   .
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OS   Cherry small circular viroid-like RNA 1
OC   Viroids; unclassified viroids.
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RN   [1]
RP   1-402
RX   PUBMED; 16514498.
RA   Di Serio F., Daros J.A., Ragozzino A., Flores R.;
RT   "Close structural relationship between two hammerhead viroid-like RNAs
RT   associated with cherry chlorotic rusty spot disease";
RL   Arch. Virol. 151(8):1539-1549(2006).
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RN   [2]
RP   1-402
RA   Flores R.;
RT   ;
RL   Submitted (10-JAN-2006) to the EMBL/GenBank/DDBJ databases.
RL   Instituto de Biologia Molecular y Celular de Plantas (UPV-CSIC),
RL   Universidad Politecnica de Valencia, Avenida de los Naranjos s/n, Valencia,
RL   Valencia 46022, Spain
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FH   Key             Location/Qualifiers
FH
FT   source          1. .402
FT                   /organism="Cherry small circular viroid-like RNA 1"
FT                   /specific_host="cherry tree cultivar Imperiale displaying
FT                   symptoms of cherry chlorotic rusty spot disease"
FT                   /isolate="cscRNA1.7O"
FT                   /mol_type="genomic RNA"
FT                   /country="Italy"
FT                   /isolation_source="symptomatic leaves"
FT                   /db_xref="taxon:368620"
FT   gene            join(397. .402,1. .45)
FT                   /gene="RZ+"
FT                   /note="hammerhead ribozyme plus"
FT   misc_feature    join(402,1)
FT                   /gene="RZ+"
FT                   /product="RZ+ self-cleavage site"
FT   gene            complement(246. .296)
FT                   /gene="RZ-"
FT                   /note="hammerhead ribozyme minus"
FT   misc_feature    complement(290. .291)
FT                   /gene="RZ-"
FT                   /product="RZ-self-cleavage site"
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SQ   Sequence 402 BP; 110 A; 83 C; 100 G; 109 T; 0 other;

dq357620 Length: 402  21-JUL-2006  Type: N  Check: 6868  ..

       1  gtgggatgtg cgtctcacct gaagaggaca aaagtccgaa acggtatgtt
      51  agtctttatt tctcgctgaa agttttaagt cggaagaagt ttcttcctga
     101  ctgagccaaa cacggtaaac aaaacctttg cttttcccgt attccataat
     151  ggacgggtgt tatccttttg taagataact gcaggtgcag gtcctgaaat
     201  cgtgtggtgg catgaacttt aggcgaagaa agaggagagt aacagactat
     251  ttcgttcttt tgaactcgtc agtagggaca cacatcccca tatagctggc
     301  tcgacatact tcaggaccgc gcctggtagt tcccaataca ggaaactctt
     351  cgtctaaagg aagacggaaa gcaggttttg cggtatgacc gagcttactg
     401  ta