Sequence of DPV Cherry small circular viroid-like RNA

Cherry small circular viroid-like RNA 2 isolate cscRNA2.82, complete genome.

ACC No: DQ357622

Dated: 2006-07-21 | Length: 376 | CRC: 1486723564

                
ID   DQ357622; SV 1; circular; genomic RNA; STD; VRL; 376 BP.
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AC   DQ357622;
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DT   21-JUL-2006 (Rel. 88, Created)
DT   21-JUL-2006 (Rel. 88, Last updated, Version 1)
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DE   Cherry small circular viroid-like RNA 2 isolate cscRNA2.82, complete
DE   genome.
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KW   .
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OS   Cherry small circular viroid-like RNA 2
OC   Viroids; unclassified viroids.
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RN   [1]
RP   1-376
RX   PUBMED; 16514498.
RA   Di Serio F., Daros J.A., Ragozzino A., Flores R.;
RT   "Close structural relationship between two hammerhead viroid-like RNAs
RT   associated with cherry chlorotic rusty spot disease";
RL   Arch. Virol. 151(8):1539-1549(2006).
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RN   [2]
RP   1-376
RA   Flores R.;
RT   ;
RL   Submitted (10-JAN-2006) to the EMBL/GenBank/DDBJ databases.
RL   Instituto de Biologia Molecular y Celular de Plantas (UPV-CSIC),
RL   Universidad Politecnica de Valencia, Avenida de los Naranjos s/n, Valencia,
RL   Valencia 46022, Spain
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FH   Key             Location/Qualifiers
FH
FT   source          1. .376
FT                   /organism="Cherry small circular viroid-like RNA 2"
FT                   /specific_host="cherry tree cultivar Imperiale displaying
FT                   symptoms of cherry chlorotic rusty spot disease"
FT                   /isolate="cscRNA2.82"
FT                   /mol_type="genomic RNA"
FT                   /country="Italy"
FT                   /isolation_source="symptomatic leaves"
FT                   /db_xref="taxon:368621"
FT   gene            join(370. .376,1. .45)
FT                   /gene="RZ+"
FT                   /note="hammerhead ribozyme plus"
FT   misc_feature    join(376,1)
FT                   /gene="RZ+"
FT                   /product="RZ+ self-cleavage site"
FT   gene            complement(214. .264)
FT                   /gene="RZ-"
FT                   /note="hammerhead ribozyme minus"
FT   misc_feature    complement(258. .259)
FT                   /gene="RZ-"
FT                   /product="RZ-self-cleavage site"
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SQ   Sequence 376 BP; 111 A; 79 C; 94 G; 92 T; 0 other;

dq357622 Length: 376  21-JUL-2006  Type: N  Check: 5363  ..

       1  gtgggatgtg cgtctcacct gaagaggaca aaagtccgaa acagtattag
      51  tctctagtcc tagccgacgg tttgagccaa tcacggtaaa caaaaccttt
     101  gctttcctgt cttccttaag acagaagggt tatcattaag ataaccgcag
     151  gtgcaggtcc tgaaatcgtg atgaggcatg aacccaaggc gaggaaaggg
     201  ggagagatta acaactattt cgttcttttg aactcgtcag tagggacaca
     251  catccccata tagcggtttg ttcatacttc agggcctgcg cctgggttac
     301  tacacaaaag agtaactgac gtcgactacg gaagacgtaa agcaaaggtt
     351  ttgttggtat gagaaaccta actgta