Sequence of DPV Cherry small circular viroid-like RNA

Cherry small circular viroid-like RNA 2 isolate cscRNA2.139, complete genome.

ACC No: DQ357623

Dated: 2006-07-21 | Length: 372 | CRC: 1011484810

                
ID   DQ357623; SV 1; circular; genomic RNA; STD; VRL; 372 BP.
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AC   DQ357623;
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DT   21-JUL-2006 (Rel. 88, Created)
DT   21-JUL-2006 (Rel. 88, Last updated, Version 1)
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DE   Cherry small circular viroid-like RNA 2 isolate cscRNA2.139, complete
DE   genome.
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KW   .
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OS   Cherry small circular viroid-like RNA 2
OC   Viroids; unclassified viroids.
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RN   [1]
RP   1-372
RX   PUBMED; 16514498.
RA   Di Serio F., Daros J.A., Ragozzino A., Flores R.;
RT   "Close structural relationship between two hammerhead viroid-like RNAs
RT   associated with cherry chlorotic rusty spot disease";
RL   Arch. Virol. 151(8):1539-1549(2006).
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RN   [2]
RP   1-372
RA   Flores R.;
RT   ;
RL   Submitted (10-JAN-2006) to the EMBL/GenBank/DDBJ databases.
RL   Instituto de Biologia Molecular y Celular de Plantas (UPV-CSIC),
RL   Universidad Politecnica de Valencia, Avenida de los Naranjos s/n, Valencia,
RL   Valencia 46022, Spain
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FH   Key             Location/Qualifiers
FH
FT   source          1. .372
FT                   /organism="Cherry small circular viroid-like RNA 2"
FT                   /specific_host="cherry tree cultivar Imperiale displaying
FT                   symptoms of cherry chlorotic rusty spot disease"
FT                   /isolate="cscRNA2.139"
FT                   /mol_type="genomic RNA"
FT                   /country="Italy"
FT                   /isolation_source="symptomatic leaves"
FT                   /db_xref="taxon:368621"
FT   gene            join(367. .372,1. .45)
FT                   /gene="RZ+"
FT                   /note="hammerhead ribozyme plus"
FT   misc_feature    join(372,1)
FT                   /gene="RZ+"
FT                   /product="RZ+ self-cleavage site"
FT   gene            complement(214. .264)
FT                   /gene="RZ-"
FT                   /note="hammerhead ribozyme minus"
FT   misc_feature    complement(258. .259)
FT                   /gene="RZ-"
FT                   /product="RZ-self-cleavage site"
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SQ   Sequence 372 BP; 107 A; 86 C; 92 G; 87 T; 0 other;

dq357623 Length: 372  21-JUL-2006  Type: N  Check: 2174  ..

       1  gtgggatgtg cgtctcacct gaagaggaca aaagtccgaa acagtattag
      51  tctcagttcc tagctgacgg tttgagccaa tcacggtaaa caaaaccttg
     101  ctttcctgtc ttccttaaga cagaagggtt atcattaaga taaccacagg
     151  cgcaggtcct gaaatcgtga tgaggcataa aaccataagc gaggaaaggg
     201  ggggagatta acaactattt cgttcttttg aactcttcag tagggacgcg
     251  catccccata tagctggctc ggcatacctc aggaccgcac ctggtagtca
     301  cccatacagg tagactcttc gtctaaagga agacggaaag caggttttgc
     351  tggtataccc gagcacactg ta