Sequence of DPV Cherry small circular viroid-like RNA

Cherry small circular viroid-like RNA 1 isolate cscRNA1.114, complete genome.

ACC No: DQ357625

Dated: 2006-07-21 | Length: 396 | CRC: 141846362

                
ID   DQ357625; SV 1; circular; genomic RNA; STD; VRL; 396 BP.
XX
AC   DQ357625;
XX
DT   21-JUL-2006 (Rel. 88, Created)
DT   21-JUL-2006 (Rel. 88, Last updated, Version 1)
XX
DE   Cherry small circular viroid-like RNA 1 isolate cscRNA1.114, complete
DE   genome.
XX
KW   .
XX
OS   Cherry small circular viroid-like RNA 1
OC   Viroids; unclassified viroids.
XX
RN   [1]
RP   1-396
RX   PUBMED; 16514498.
RA   Di Serio F., Daros J.A., Ragozzino A., Flores R.;
RT   "Close structural relationship between two hammerhead viroid-like RNAs
RT   associated with cherry chlorotic rusty spot disease";
RL   Arch. Virol. 151(8):1539-1549(2006).
XX
RN   [2]
RP   1-396
RA   Flores R.;
RT   ;
RL   Submitted (10-JAN-2006) to the EMBL/GenBank/DDBJ databases.
RL   Instituto de Biologia Molecular y Celular de Plantas (UPV-CSIC),
RL   Universidad Politecnica de Valencia, Avenida de los Naranjos s/n, Valencia,
RL   Valencia 46022, Spain
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .396
FT                   /organism="Cherry small circular viroid-like RNA 1"
FT                   /specific_host="cherry tree cultivar Imperiale displaying
FT                   symptoms of cherry chlorotic rusty spot disease"
FT                   /isolate="cscRNA1.114"
FT                   /mol_type="genomic RNA"
FT                   /country="Italy"
FT                   /isolation_source="symptomatic leaves"
FT                   /db_xref="taxon:368620"
FT   gene            join(391. .396,1. .45)
FT                   /gene="RZ+"
FT                   /note="hammerhead ribozyme plus"
FT   misc_feature    join(396,1)
FT                   /gene="RZ+"
FT                   /product="RZ+ self-cleavage site"
FT   gene            complement(240. .290)
FT                   /gene="RZ-"
FT                   /note="hammerhead ribozyme minus"
FT   misc_feature    complement(284. .285)
FT                   /gene="RZ-"
FT                   /product="RZ-self-cleavage site"
XX
SQ   Sequence 396 BP; 116 A; 87 C; 97 G; 96 T; 0 other;

dq357625 Length: 396  21-JUL-2006  Type: N  Check: 4917  ..

       1  gtgggatgtg cgtctcacct gaagaggaca aaagtccgaa acagtattat
      51  tagtctttat ttctagccga aagtgtgaag tcggaagaag cttcttcctg
     101  actgaaccaa acacgatcaa caaaaccttg cttatcccgc attccataag
     151  gacgggggtt atccttaaat gaggtaacgg caggcgcagg tcctgaaatc
     201  gtgaggtggc atgaacatta agcgaagaaa aggagaataa ctatttcgtt
     251  cttttgaact catcagtagg gacgcacatc cccatatagc ttagctcggc
     301  atacttcagg accgcacctg gtagtcaccc gtacaggtaa ctcttcgtct
     351  aaaggaagac ggaaagcagg ttttgtcggt atgccgagct actgta