Sequence of DPV Cherry small circular viroid-like RNA

Cherry small circular viroid-like RNA 1 isolate cscRNA1.100, complete genome.

ACC No: DQ357627

Dated: 2006-07-21 | Length: 402 | CRC: 586790597

                
ID   DQ357627; SV 1; circular; genomic RNA; STD; VRL; 402 BP.
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AC   DQ357627;
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DT   21-JUL-2006 (Rel. 88, Created)
DT   21-JUL-2006 (Rel. 88, Last updated, Version 1)
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DE   Cherry small circular viroid-like RNA 1 isolate cscRNA1.100, complete
DE   genome.
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KW   .
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OS   Cherry small circular viroid-like RNA 1
OC   Viroids; unclassified viroids.
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RN   [1]
RP   1-402
RX   PUBMED; 16514498.
RA   Di Serio F., Daros J.A., Ragozzino A., Flores R.;
RT   "Close structural relationship between two hammerhead viroid-like RNAs
RT   associated with cherry chlorotic rusty spot disease";
RL   Arch. Virol. 151(8):1539-1549(2006).
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RN   [2]
RP   1-402
RA   Flores R.;
RT   ;
RL   Submitted (10-JAN-2006) to the EMBL/GenBank/DDBJ databases.
RL   Instituto de Biologia Molecular y Celular de Plantas (UPV-CSIC),
RL   Universidad Politecnica de Valencia, Avenida de los Naranjos s/n, Valencia,
RL   Valencia 46022, Spain
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FH   Key             Location/Qualifiers
FH
FT   source          1. .402
FT                   /organism="Cherry small circular viroid-like RNA 1"
FT                   /specific_host="cherry tree cultivar Imperiale displaying
FT                   symptoms of cherry chlorotic rusty spot disease"
FT                   /isolate="cscRNA1.100"
FT                   /mol_type="genomic RNA"
FT                   /country="Italy"
FT                   /isolation_source="symptomatic leaves"
FT                   /db_xref="taxon:368620"
FT   gene            join(397. .402,1. .45)
FT                   /gene="RZ+"
FT                   /note="hammerhead ribozyme plus"
FT   misc_feature    join(402,1)
FT                   /gene="RZ+"
FT                   /product="RZ+ self-cleavage site"
FT   gene            complement(242. .292)
FT                   /gene="RZ-"
FT                   /note="hammerhead ribozyme minus"
FT   misc_feature    complement(286. .287)
FT                   /gene="RZ-"
FT                   /product="RZ-self-cleavage site"
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SQ   Sequence 402 BP; 110 A; 86 C; 99 G; 107 T; 0 other;

dq357627 Length: 402  21-JUL-2006  Type: N  Check: 2507  ..

       1  gtgggatgtg cgtctcacct gaagaggaca aaagtccgaa acagtatgtt
      51  cagtctttat ctctcgctga aagttttaag tcggaagaag tttcttcctg
     101  actgagccaa acacggtaaa caaaaccttt gcttttcccg cattccatta
     151  aggacggggg ttatcctttg aggtaacgac aggtgcaggt cctgaaatcg
     201  tgtggaggca tgaactttag gcgatgaaaa ggagaataac agctatttcg
     251  ttcttttgaa ctcatcagta gagacgcgca tctccatata gctggctcgg
     301  gatatatttt caggaccgca cctggtagtc acccatacag gtaactcttc
     351  gtctaaagga agacggaaag caggttttgt cggtataccc gagctcactg
     401  ta