Sequence of DPV Mungbean yellow mosaic India virus

Mungbean yellow mosaic India virus pre-coat protein (AV2) and coat protein (AV1) genes, complete cds.

ACC No: DQ389145

Dated: 2008-01-10 | Length: 1122 | CRC: -1977620947

                
ID   DQ389145; SV 1; linear; genomic DNA; STD; VRL; 1122 BP.
XX
AC   DQ389145;
XX
DT   03-MAY-2006 (Rel. 87, Created)
DT   10-JAN-2008 (Rel. 94, Last updated, Version 2)
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DE   Mungbean yellow mosaic India virus pre-coat protein (AV2) and coat protein
DE   (AV1) genes, complete cds.
XX
KW   .
XX
OS   Mungbean yellow mosaic India virus
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-1122
RX   PUBMED; 17870189.
RA   Rouhibakhsh A., Priya J., Periasamy M., Haq Q.M., Malathi V.G.;
RT   "An improved DNA isolation method and PCR protocol for efficient detection
RT   of multicomponents of begomovirus in legumes";
RL   J. Virol. Methods 147(1):37-42(2008).
XX
RN   [2]
RP   1-1122
RA   Rouhibakhsh A., Malathi V.G.;
RT   "Nucleotide sequence of right half (AV1 and AV2) of the genome of Mungbean
RT   yellow mosaic India virus";
RL   Unpublished.
XX
RN   [3]
RP   1-1122
RA   Rouhibakhsh A., Malathi V.G.;
RT   ;
RL   Submitted (05-FEB-2006) to the EMBL/GenBank/DDBJ databases.
RL   Plant Pathology, IARI, Pusa Road, New Delhi, Delhi 110012, India
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1122
FT                   /organism="Mungbean yellow mosaic India virus"
FT                   /segment="DNA A"
FT                   /specific_host="cowpea"
FT                   /mol_type="genomic DNA"
FT                   /country="India:Bareily, Utar Pradesh"
FT                   /db_xref="taxon:223287"
FT   gene            156. .497
FT                   /gene="AV2"
FT   CDS             156. .497
FT                   /codon_start=1
FT                   /gene="AV2"
FT                   /product="pre-coat protein"
FT                   /db_xref="GOA:Q1KWY5"
FT                   /db_xref="InterPro:IPR002511"
FT                   /db_xref="UniProtKB/TrEMBL:Q1KWY5"
FT                   /protein_id="ABD60091.1"
FT                   /translation="MWDPLLNDFPESLHGFRCMLAIKYLQQVQENYPSNSLGFLYLTGL
FT                   IQVLRIRNHAQADLRYGLLYPDIECTEKIKLRYPARAACVCGRCPYQHEETTLDQPPHV
FT                   EETSVLPTV"
FT   gene            316. .1089
FT                   /gene="AV1"
FT   CDS             316. .1089
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /note="role in encapsidation of virus particles"
FT                   /db_xref="GOA:Q1KX07"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:Q1KX07"
FT                   /protein_id="ABD60092.1"
FT                   /translation="MPKRTYDTAFSTPISNARRRLNFDTPLVLPASVGGVPTNMKRRRW
FT                   TNRPMWRKPRFYRLYRSPDVPRGCEGPCKVQSFEQRHDIAHTGKVICISDVTRGNGITH
FT                   RIGKRFCIKSVYITGKVWMDENIKSKNHTNTVMFKLCRDRRPFGTPMDFGQVFNMYDNE
FT                   PSTATVKNDLRDRYQVLRKFSATVTGGQYACKEQAMVNRFFKVSNYVVSNHQEAAKYEN
FT                   HTENALLLYMACTHASNPVYATLKIRIYFYDSILN"
XX
SQ   Sequence 1122 BP; 308 A; 235 C; 248 G; 331 T; 0 other;

dq389145 Length: 1122  10-JAN-2008  Type: N  Check: 5081  ..

       1  acctgagtgc cccgcgaccg gtgtattggg gttactttaa cttttctgct
      51  tttgtggtac ccttatcttt agtcgttcaa tcagaagcgc tcctcagcgc
     101  tatgttaatt caaatttgaa ttataaagca agtggacact ctgaacccac
     151  taacaatgtg ggatccattg ttgaacgact ttcccgaatc actgcatgga
     201  ttccggtgca tgttggcaat aaagtatttg cagcaagttc aagagaatta
     251  tccatctaat tctcttggtt ttttgtacct tacagggtta attcaggtat
     301  tgcgcatccg gaatcatgcc caagcggacc tacgatacgg ccttctctac
     351  cccgatatcg aatgcacgga gaagattaaa cttcgatacc ccgctcgtgc
     401  tgcctgcgtc tgtgggaggt gtccctacca acatgaagag acgacgttgg
     451  accaaccgcc ccatgtggag gaaacctcgg ttttaccgac tgtataggtc
     501  ccctgatgtc cctcgtggtt gtgagggacc atgtaaagtt caatcatttg
     551  agcaaaggca tgatattgcc cacacaggca aagtgatttg catatctgac
     601  gtgactagag gtaatggaat tacacatcgt attggcaaac gattttgcat
     651  caagtccgtg tacattactg gtaaggtttg gatggacgaa aatattaagt
     701  ccaaaaatca cacgaacact gtgatgttca agttatgtcg tgacagacga
     751  ccttttggta cacccatgga ttttggtcaa gtgttcaaca tgtatgacaa
     801  tgagcccagt acagctactg tgaagaacga tctgcgtgat cgttatcaag
     851  tcttgcgaaa gtttagtgcc actgttactg gtggccaata tgcttgtaag
     901  gaacaagcca tggtgaatcg tttcttcaaa gttagtaatt atgttgtttc
     951  caaccaccag gaggcagcga agtatgagaa ccatactgag aacgcattat
    1001  tattgtatat ggcatgtact catgcctcaa atcctgtgta tgcaacactt
    1051  aaaattcgga tctattttta tgattcgata ttgaattaat aaagtttgta
    1101  ttgaacatta tgcgtaaagc tt