Sequence of DPV Hibiscus chlorotic ringspot virus
Hibiscus chlorotic ringspot virus isolate TW, complete genome.
ACC No: DQ392986
Dated: 2006-03-02 | Length: 3910 | CRC: 546101893
ID DQ392986 standard; genomic RNA; VRL; 3910 BP.
XX
AC DQ392986;
XX
SV DQ392986.1
XX
DT 02-MAR-2006 (Rel. 87, Created)
DT 02-MAR-2006 (Rel. 87, Last updated, Version 1)
XX
DE Hibiscus chlorotic ringspot virus isolate TW, complete genome.
XX
KW .
XX
OS Hibiscus chlorotic ringspot virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Carmovirus.
XX
RN [1]
RP 1-3910
RA Li S.-C., Chang Y.-C.;
RT "Study and cloning of a Taiwan isolate of Hibiscus chlorotic ringspot
RT virus";
RL Unpublished.
XX
RN [2]
RP 1-3910
RA Li S.-C., Chang Y.-C.;
RT ;
RL Submitted (07-FEB-2006) to the EMBL/GenBank/DDBJ databases.
RL Department of Plant Pathology and Microbiology, National Taiwan University,
RL 1, Section 4, Roosevelt Road, Taipei, Taiwan 10617, R.O.C.
XX
FH Key Location/Qualifiers
FH
FT source 1. .3910
FT /organism="Hibiscus chlorotic ringspot virus"
FT /specific_host="Hibiscus rosa-sinensis"
FT /isolate="TW"
FT /mol_type="genomic RNA"
FT /country="Taiwan"
FT /virion
FT /db_xref="taxon:53181"
FT CDS 31. .2238
FT /codon_start=1
FT /transl_except=(pos:673. .675,aa:OTHER)
FT /product="p81 protein"
FT /note="putative RdRp"
FT /protein_id="ABD48708.1"
FT /translation="MFSHVFSLAYETVSLSAALCVATLAAAYEIVTHPRIAPRDPCIAE
FT ELCMRDELEVNEPSDEDAEACLEALPSSAGDKKVLKVKRKHRGKFALHAAIAAKLHFGG
FT TPTPTRSNELAVRRWLASYCKERRLVDTHAVQAIALATPLVLTPGAAEITERAILNSPV
FT FGMRRAALAEASKPSSLKYQMVFEAHRARTWLRAWRKLVGLPDFQGYTTMKXGCLREIA
FT GVDTQIVRGEHQAMAVFPREGFSKPRRIFHVCGMGNGTTFGVHNNSLANLRRGLVERVF
FT YVEDASKNLVPTPRPLPGKFQELKYLARRVARIAGHHTPIPRESYPGLYKGRRFQIYAG
FT AVESLASNPIHRRDSFLKTFVKAEKINFSAKPDPAPRVIQPRDPRYNVEVGRYLKPYEH
FT HLYRALDVVWKGPTVLKGYTVSEIGNIMHLHWSQFQKPCAVGFDMKRFDQHVSVDALRF
FT EHSVYGRSFCSKELDRLLEWQLLNSGVGHANDGYIRYKVDGCRMSGDVNTAMGNCLLAC
FT LITKHLLKGIRCRLINNGDDCVLFFDAPDLAAVTERLAHWLDFGFQCVVEAPVYELEQV
FT EFCQMKPVFDGQEWICVRNVHVSVAKDTYSINPWNNVADAGRWIRAIGECGESLTGGIP
FT VLNAYYGVFKRAYGAAGKVKESLAFDSGMYRLSQRCSRVFHEPTEEARVSFYKAFGVDP
FT LAQVAIESFYDEMEIELEFTPEGKPDDISLQWLLRNRTPNS"
FT CDS 31. .675
FT /codon_start=1
FT /product="p28 protein"
FT /note="putative RdRp subunit"
FT /protein_id="ABD48707.1"
FT /translation="MFSHVFSLAYETVSLSAALCVATLAAAYEIVTHPRIAPRDPCIAE
FT ELCMRDELEVNEPSDEDAEACLEALPSSAGDKKVLKVKRKHRGKFALHAAIAAKLHFGG
FT TPTPTRSNELAVRRWLASYCKERRLVDTHAVQAIALATPLVLTPGAAEITERAILNSPV
FT FGMRRAALAEASKPSSLKYQMVFEAHRARTWLRAWRKLVGLPDFQGYTTMK"
FT CDS 41. .670
FT /codon_start=1
FT /product="p23 protein"
FT /note="putative protein"
FT /protein_id="ABD48709.1"
FT /translation="MSFHSLMKLFLSVRHCVSQPLQLLMKLLRTPVSLPATPALLKSCA
FT CVMSSRLMSPLMRTLRLVWKLFPLLQAIRKCSKLRGSTGVSLRSMLPSQLSSTLGVLQP
FT QRALTSLQCGGGLRAIARKGGWLTHTLYKRSLWPLLWYLRQGPLKSLSERSLIVLCLEC
FT GGRLWPKLRSRAASNIKWCLRLIGRERGSGPGGSWWVSLIFRGTPP"
FT CDS 2205. .2417
FT /codon_start=1
FT /product="p8 protein"
FT /note="putative movement protein"
FT /protein_id="ABD48710.1"
FT /translation="MASTQPNTEFIEINPHDTSLQKGAGKGNRQAKKEVALQAVHKANK
FT QDEAISGGSFVFVADKVEVTININF"
FT CDS 2344. .2580
FT /codon_start=1
FT /product="p9 protein"
FT /note="putative movement protein"
FT /protein_id="ABD48711.1"
FT /translation="MRLFLGVLSFLLLIKLRLLSTSTFEVDWRTLRENLLIISTLSLFG
FT FFVTVLIKAESEHIHFHSHDSSKTQNIVVNTGK"
FT CDS 2590. .3627
FT /codon_start=1
FT /product="capsid protein"
FT /note="p38 protein"
FT /protein_id="ABD48712.1"
FT /translation="MLQKNDPAVQRAYNAHLPWAIKLKNDGWAALSKGQKRAANRYAGG
FT TRPVTSQVKLSTLKVTAPVAASLRTRNPGANIRTAGKSVTVVHCEFVGNVARQTGSGLL
FT VVERTINPSNVLSFPWLSVLAAGYEKYRVSSLSLRYSPTCATTTEGKVILAFDKDAADA
FT SPTSKSDMYNHDGAVGVSPWDSAMLQVPCDTVDRFINDSSSSDPKLVDFGKVVVANYGQ
FT SEGDVDVIGELFLQYSITLKIPQGTATLTQSGVGITSTGPSLFRVQLSESTYVFTCNGT
FT GRFLFFFNSTVDATSTISGMEVKQKSSTDDKGETTILELLATESGGKIAILADKGTITW
FT WACRN"
FT CDS 2603. .3277
FT /codon_start=1
FT /product="p25 protein"
FT /note="putative protein"
FT /protein_id="ABD48713.1"
FT /translation="MTQPFSARIMPIYLGQSNSRTMGGLLFLRVRKEQPIDTRVEPVLL
FT LLKLSCQHLKLRLQWPPRCGHATLERTLGRLENRSPSSIASLWAMSPGRLVVGYWWLRG
FT QSIPATYSASPGFLYSLPDTRSTACHHCLLDILQLVPQPRRARSSWRLIKTLQMLPPPP
FT RATCITMMEQLESRPGTVQCCKYLVILWIGLLMIPVVPTLSLLTLVRWLLPIMANLKGM
FT WM"
XX
SQ Sequence 3910 BP; 952 A; 912 C; 1030 G; 1016 T; 0 other;
dq392986 Length: 3910 02-MAR-2006 Type: N Check: 1275 ..
1 gggaaaccgt ggcaagtttc cgaatcatct atgttctccc atgtcttttc
51 actcgcttat gaaactgttt ctctcagtgc ggcactgtgt gtcgcaaccc
101 ttgcagctgc ttatgaaatt gttacgcacc cccgtatcgc tccccgcgac
151 ccctgcattg ctgaagagtt gtgcatgcgt gatgagctcg aggttaatga
201 gccctctgat gaggacgctg aggcttgtct ggaagctctt ccctcttctg
251 caggcgataa gaaagtgctc aaagttaaga ggaagcacag gggtaagttt
301 gcgctccatg ctgccatcgc agctaagctc cactttgggg gtactccaac
351 cccaacgcgc tctaacgagc ttgcagtgcg gaggtggctt gcgagctatt
401 gcaaggaaag gaggctggtt gacacacacg ctgtacaagc gatcgctctg
451 gccactcctc tggtacttac gccaggggcc gctgaaatca ctgagcgagc
501 gatccttaat agtcctgtgt ttggaatgcg gagggcggct ctggccgaag
551 cttcgaagcc gagcagcctc aaatatcaaa tggtgtttga ggctcatcgg
601 gcgagaacgt ggctcagggc ctggcggaag ttggtgggtc tccctgattt
651 tcaggggtac accaccatga aataggggtg ccttagggaa atagctggtg
701 tggacactca aattgtccgt ggagagcacc aggctatggc cgtattccct
751 agggaaggat tctccaaacc ccggcgcatc ttccatgtct gtggaatggg
801 taatgggacc accttcggag ttcacaacaa ttctcttgct aatttacggc
851 gggggcttgt tgagagggtg ttctacgtcg aagatgccag caaaaatcta
901 gtcccaaccc ctcggcccct acctggtaaa ttccaggagt tgaagtatct
951 ggcacgacgc gtcgcgcgca ttgctggaca tcatacccct atccccaggg
1001 aaagttatcc tgggttgtat aagggcagga ggttccaaat ttatgcgggc
1051 gcggtcgaga gtttagcttc caatcctatt cataggaggg attcctttct
1101 caagactttc gtgaaagccg aaaagatcaa cttttcggcg aaaccagacc
1151 ctgctcctag agttatccag cctagggatc cgagatataa tgtagaggta
1201 ggtagatatc ttaagcccta cgagcaccat ctatatagag ctctagatgt
1251 tgtttggaaa gggcccactg tgcttaaggg atatactgtt agcgaaatag
1301 ggaatattat gcatttacac tggtcacaat tccagaaacc atgtgctgtt
1351 ggatttgaca tgaagagatt tgatcagcac gtttctgtgg atgcgctgcg
1401 atttgaacat tctgtgtacg gaaggagttt ttgctcaaaa gagcttgaca
1451 gattgttgga atggcagctc ctcaactctg gggttggaca tgcaaatgac
1501 gggtacatta ggtacaaggt tgatggatgt aggatgagtg gagacgtgaa
1551 cactgcaatg ggcaattgtc tcctcgcctg cttgattacc aaacacctcc
1601 tgaagggcat cagatgtaga ctcatcaata atggtgatga ctgtgtcctc
1651 ttcttcgacg ctccagatct agctgcggtc actgaacggt tggctcactg
1701 gcttgatttt ggattccagt gcgtggttga ggctccagtt tatgagctag
1751 aacaggttga gttttgtcag atgaaaccag tgtttgatgg gcaggagtgg
1801 atatgtgtta ggaatgttca cgtctcggta gcgaaggata cttactctat
1851 caatccttgg aacaatgtgg ctgatgctgg taggtggatc agagccattg
1901 gggaatgcgg tgagtctctc accgggggca tcccagtgct aaatgcatat
1951 tatggtgtgt ttaagagagc ttatggtgcc gcggggaaag taaaggagag
2001 tttggcattt gattctggaa tgtatagact ctcccaaagg tgttctaggg
2051 tgtttcatga acccactgaa gaagctagag tgagtttcta caaggctttt
2101 ggggtggatc ccctggctca agttgcaatt gaatcattct atgatgagat
2151 ggaaattgag ttggaattca ccccggaggg aaagcctgat gatatctcac
2201 tccaatggct tctacgcaac cgaacaccga attcatagag atcaatcccc
2251 acgacaccag cttacagaag ggcgcaggca agggaaatag acaggctaag
2301 aaagaagtag cactccaagc agtgcacaag gccaacaagc aggatgaggc
2351 tatttctggg ggttctttcg tttttgttgc tgataaagtt gaggttacta
2401 tcaacatcaa cttttgaggt tgactggaga accctccggg aaaacttact
2451 catcatttca acgcttagtc tgtttgggtt ttttgtcact gtcctgatca
2501 aggctgagtc agaacacatc catttccatt cgcacgacag tagtaagaca
2551 cagaacatag tagtaaatac tggcaagtga cctatcgaca tgctgcagaa
2601 gaatgaccca gccgttcagc gcgcgtataa tgcccattta ccttgggcaa
2651 tcaaactcaa gaacgatggg tgggctgctc tttctaaggg tcagaaaaga
2701 gcagccaatc gatacgcggg tggaacccgt cctgttactt ctcaagttaa
2751 gctgtcaaca cttaaagtta cggctccagt ggccgcctcg ttgcggacac
2801 gcaaccctgg agcgaacatt aggacggctg gaaaatcggt caccgtcgtc
2851 cattgcgagt ttgtgggcaa tgtcgcccgg cagactggta gtgggctact
2901 ggtggttgag aggacaatca atcccagcaa cgtactcagc ttcccctggc
2951 tttctgtact cgctgccgga tacgagaagt accgcgtgtc atcactgtct
3001 cttagatatt ctccaacttg tgccacaacc acggagggca aggtcatctt
3051 ggcgtttgat aaagacgctg cagatgcttc ccccacctcc aagagcgaca
3101 tgtataacca tgatggagca gttggagtct cgccctggga cagtgcaatg
3151 ctgcaagtac cttgtgatac tgtggatagg tttattaatg attccagtag
3201 ttccgaccct aagcttgttg actttggtaa ggtggttgtt gccaattatg
3251 gccaatctga aggggatgtg gatgtgattg gggagctatt cctgcaatac
3301 tcgatcaccc tcaagatccc ccagggtaca gcgacactca cacagtccgg
3351 cgtgggaatc acatcaactg ggccctccct cttccgggtt cagctgagtg
3401 aaagcaccta tgtgttcacc tgcaacggta ctggtcgctt cctgttcttc
3451 ttcaactcta ctgttgatgc aacctccacc atttctggta tggaggtgaa
3501 gcaaaagagt tcaaccgatg acaaaggaga gacaacgata ttggaactac
3551 tcgctactga atcaggtggt aagatagcaa tattggcgga taagggcacc
3601 atcacttggt gggcctgcag gaactaggtt tatctattat tgggccttcg
3651 tgttgttagg ggcagtggaa gcgtcggtct agccagccgt cccctgggta
3701 gtgtgctctg tctatgtaca ccactactcg gctttcacaa acaaccggac
3751 tcccatacta tgtaaattat gttgattgct tcttcttccc ccttttaata
3801 tctcctctca tctcctctac acttggaact cataaaatcc ttcgggtggg
3851 cttgagtttc gggtactatt tgaaatcccc tccacaaccg ccatagttgt
3901 gaggcagccc