Sequence of DPV Pelargonium flower break virus
Pelargonium flower break virus isolate KN5 clone 2 putative movement protein (p7), putative movement protein (p12), and coat protein (CP) genes, complete cds.
ACC No: DQ443039
Dated: 2006-08-01 | Length: 1828 | CRC: -758306050
ID DQ443039; SV 1; linear; genomic RNA; STD; VRL; 1828 BP. XX AC DQ443039; XX DT 06-APR-2006 (Rel. 87, Created) DT 01-AUG-2006 (Rel. 88, Last updated, Version 2) XX DE Pelargonium flower break virus isolate KN5 clone 2 putative movement DE protein (p7), putative movement protein (p12), and coat protein (CP) genes, DE complete cds. XX KW . XX OS Pelargonium flower break virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae; OC Carmovirus. XX RN [1] RP 1-1828 RX PUBMED; 16873268. RA Rico P., Ivars P., Elena S.F., Hernandez C.; RT "Insights into the selective pressures restricting pelargonium flower break RT virus genome variability: evidence for host adaptation"; RL J. Virol. 80(16):8124-8132(2006). XX RN [2] RP 1-1828 RA Rico P., Ivars P., Elena S.F., Hernandez C.; RT ; RL Submitted (06-MAR-2006) to the EMBL/GenBank/DDBJ databases. RL Biologia del estres, Instituto de Biologia Molecular y Celular de Plantas, RL Avda. de los Naranjos s/n, Valencia, Valencia 46022, Spain XX FH Key Location/Qualifiers FH FT source 1. .1828 FT /organism="Pelargonium flower break virus" FT /specific_host="Pelargonium" FT /isolate="KN5" FT /mol_type="genomic RNA" FT /country="Kenya" FT /clone="2" FT /db_xref="taxon:35291" FT gene 193. .399 FT /gene="p7" FT CDS 193. .399 FT /codon_start=1 FT /gene="p7" FT /product="putative movement protein" FT /db_xref="UniProtKB/TrEMBL:Q1PGE0" FT /protein_id="ABD93319.1" FT /translation="MASKVTVPDLGSDNEIDVSVGGRGNRGKQKGKISVAKDAVSKRTS FT DGGNGGSWVIVAETVSVNIHFNF" FT gene 233. .553 FT /gene="p12" FT CDS 233. .553 FT /codon_start=1 FT /gene="p12" FT /product="putative movement protein" FT /db_xref="UniProtKB/TrEMBL:Q1PGD9" FT /protein_id="ABD93320.1" FT /translation="MRLTCQWEDVGIGENRRVRYPSQRTLSPNGHLMVVMGVLGLLWLR FT PFRSIYTLTFSMPPLINLQHILNLTLLSLILSSFILAERVTHNQYSNDNSKAQYIRIST FT GQ" FT gene 555. .1592 FT /gene="CP" FT CDS 555. .1592 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:Q1PGD8" FT /db_xref="UniProtKB/TrEMBL:Q1PGD8" FT /protein_id="ABD93321.1" FT /translation="MDAYKNDPIVRQAVAKGVAWAVKLNTRGWSSLTTQQKKAARSALS FT VIQSPAVVVPRRTRVRNPVPAGLKSGNGKAGKSSTLTRSEFICNVSSTTGVTPTFQSWI FT INPREVKSFPQSSVCSVGYNKYRITDFRIRFSTSCSDTMNGKVAIGFTPDSSDPVPVDK FT SQLYGMQVYADTPAKESVTLKTAADNTIRFLRDSSSDDAKLVNYGRVFLATYGFESTAP FT SVIGELFFEYTVVYLDPTYVVALTQHGTLTTSSGPPYATLTTTATSTSMELNTHGKWLV FT VWVSADEVINSPVISGSGASGSVTVVSDAQTTVVAVVTANLPGAIISNTSTAAPSSLEW FT YVSRL" XX SQ Sequence 1828 BP; 461 A; 445 C; 484 G; 438 T; 0 other; dq443039 Length: 1828 01-AUG-2006 Type: N Check: 2916 .. 1 atcaggaacg tacaggttag cccagaattc ttctcgggcc tatggttcag 51 ttagcgagat ggcgcgtttt agtttcttcc tggcatttgg agttatccca 101 gatgctcaga ttgccttgga gaaacacata agagacatgc ccgtcgcagc 151 tgaatttggg cccgatgaaa gtctggcaga ccacacaatt gaatggcttc 201 taaagtgacc gttcctgatt tgggtagtga taatgagatt gacgtgtcag 251 tgggaggacg tgggaatagg ggaaaacaga agggtaagat atccgtcgca 301 aaggacgctg tctccaaacg gacatctgat ggtggtaatg ggggttcttg 351 ggttattgtg gctgagaccg tttcggtcaa tatacacttt aacttttagc 401 atgccccctc tgataaacct ccaacacata ctgaacctta ccttgttgtc 451 cttgattctc agttctttca tcttggcaga gagagtaacg cacaatcagt 501 actcaaacga caacagcaaa gcgcaataca tacggatctc aactgggcaa 551 taatatggac gcctacaaga atgacccaat agttaggcag gcagtggcaa 601 agggagtagc ttgggcggtt aagctgaaca ctagagggtg gtcttcattg 651 accacccaac agaagaaggc tgcgcgctca gctctgtctg tgatacaatc 701 cccagcggtg gttgtacctc gcagaaccag agtacgaaac ccagtacccg 751 cgggcctgaa atcagggaat ggcaaggcag ggaagagctc aactctaacc 801 cgatcagagt ttatctgcaa cgtatcgagc acaaccgggg tgaccccgac 851 tttccaatca tggatcatta atcctaggga ggtcaaaagt ttcccacagt 901 cttccgtctg ctcggttggc tacaacaagt acaggattac ggatttcagg 951 attaggttct ccacatcctg ttccgacact atgaatggga aggtggccat 1001 tggcttcact cctgattcta gcgatccggt ccctgttgat aagtcacagc 1051 tgtacgggat gcaggtgtat gccgacactc cagcaaagga gtcggtcacc 1101 ttgaagacgg ctgcagataa cacgattagg ttcctgcggg attcatccag 1151 cgatgatgcc aagctggtga attatggccg cgtattttta gccacatacg 1201 gtttcgaaag tacagctccg tccgttatag gcgagctgtt ctttgagtac 1251 accgtagttt atctcgaccc tacctatgtc gtggctttaa cacaacatgg 1301 cacgttgacc acctcatctg gccccccata tgctaccttg accaccactg 1351 ccacttcaac atccatggaa ttaaacaccc atggaaagtg gctagtggtt 1401 tgggtctcgg cagacgaggt gatcaactct ccggttatat ccggatccgg 1451 ggcaagcgga tccgtaactg tcgttagcga cgcacagact actgttgttg 1501 cagtggttac cgcaaacttg ccaggcgcca tcatttccaa cacttcaacc 1551 gctgcccctt cgtcactgga gtggtacgta tctaggctat gagagggcag 1601 tcaccctacc ttctgccaga ggttcccgga ggagtagtga tcctttgggg 1651 gtgattcata gcttggaaag gttggagagt tggagggagg ccaactgggg 1701 gaggtgctag gagcaccaga ggcagaagag caaaaatccg ggtttcatcg 1751 cctggtgcgg gcgctcaatg ctgccaacaa gttcctgaag gaagaaaggt 1801 tttggtcgat ggagacctta acccgccc