Sequence of DPV Chickpea chlorotic dwarf virus
Chickpea chlorotic dwarf virus, complete genome.
ACC No: DQ458791
Dated: 2013-03-17 | Length: 2566 | CRC: 2032550097
ID DQ458791; SV 1; circular; genomic DNA; STD; VRL; 2566 BP.
XX
AC DQ458791;
XX
DT 02-APR-2007 (Rel. 91, Created)
DT 17-MAR-2013 (Rel. 116, Last updated, Version 3)
XX
DE Chickpea chlorotic dwarf virus, complete genome.
XX
KW .
XX
OS Chickpea chlorotic dwarf virus
OC Viruses; ssDNA viruses; Geminiviridae; Mastrevirus.
XX
RN [1]
RP 1-2566
RX DOI; 10.1007/s00705-006-0933-6.
RX PUBMED; 17347772.
RA Halley-Stott R.P., Tanzer F., Martin D.P., Rybicki E.P.;
RT "The complete nucleotide sequence of a mild strain of Bean yellow dwarf
RT virus";
RL Arch. Virol. 152(6):1237-1240(2007).
XX
RN [2]
RP 1-2566
RA Halley-Stott R.P., Fiona T., Martin D.P., Rybicki E.P.;
RT ;
RL Submitted (22-MAR-2006) to the INSDC.
RL Molecular and Cell Biology, University of Cape Town, University Avenue,
RL Cape Town, WP 7701, South Africa
XX
FH Key Location/Qualifiers
FH
FT source 1. .2566
FT /organism="Chickpea chlorotic dwarf virus"
FT /isolate="mild"
FT /mol_type="genomic DNA"
FT /country="South Africa"
FT /note="originally submitted as Bean yellow dwarf virus"
FT /db_xref="taxon:463360"
FT misc_feature join(2400. .2566,1. .128)
FT /note="long intergenic repeat; LIR; spans stem loop"
FT gene 129. .407
FT /gene="V1"
FT CDS 129. .407
FT /codon_start=1
FT /gene="V1"
FT /product="V1"
FT /note="putative movement protein"
FT /db_xref="GOA:O39519"
FT /db_xref="InterPro:IPR002621"
FT /db_xref="UniProtKB/Swiss-Prot:O39519"
FT /protein_id="ABE67100.1"
FT /translation="MERILYQVFPLDTNYSYDPPAVTAPSQGSSQTDFGKVVVALVVIL
FT VSVGVFYLAYSLFLKDCILLFKAKKQRTTTEIGFGQTPARNQDHPGP"
FT gene 420. .1157
FT /gene="V2"
FT CDS 420. .1157
FT /codon_start=1
FT /gene="V2"
FT /product="coat protein"
FT /db_xref="GOA:O39520"
FT /db_xref="InterPro:IPR000143"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="UniProtKB/Swiss-Prot:O39520"
FT /protein_id="ABE67101.1"
FT /translation="MSTVTWGKKRKRSGGDSKAKSRGSSSYIPRSVSSRRESLQVATFS
FT WTSSGSGIKFSPGGAAYLVSNFPQGANDNCRHTNKTVLYKFMAKNTIYLDSSHYMKVFR
FT APFHFWLVYDKSPGANVPSTGDIFEGPSLFPHNPWTWTVSRAACHRFVVKKTWSCVVES
FT NGIDPTKGQGATYYGPGPCNQVKSCNKFFKRLGVSTEWKNSATGDVGDIKEGALYIVGA
FT PSQKSDVYVNGYFRVYFKSVGNQ"
FT misc_feature 1154. .1312
FT /note="small intergenic region; SIR"
FT gene complement(1310. .2400)
FT /gene="C1:C2"
FT CDS complement(join(1310. .1723,1810. .2400))
FT /codon_start=1
FT /gene="C1:C2"
FT /product="RepA"
FT /note="replication-associated protein"
FT /db_xref="GOA:O39522"
FT /db_xref="HSSP:P27260"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/Swiss-Prot:O39522"
FT /protein_id="ABE67102.1"
FT /translation="MPSASKNFRLQSKYVFLTYPKCSSQRDDLFQFLWEKLTPFLIFFL
FT GVASELHQDGTTHYHALLQLDKKPCIRDPSFFDFEGNHPNIQPARNSKQVLDYISKDGD
FT IKTRGDFRDHKVSPRKSDARWRTIIQTATSKEEYLDMIKEEFPHEWATKLQWLEYSANK
FT LFPPQPEPYVSPFTESDLRCHEDLHSWRETHLYHDNGRNGIRHPSLYICGPTRTGKTTW
FT ARSLGRHNYWNGTIDFTNYDEHATYNIIDDIPFKFVPLWKQLIGCQSDFTVNPKYGKKK
FT KIKGGIPSIILCNPDEDWMLSMTSQQKDYFKDNCVTHYMCDGETFFARESSSH"
FT gene complement(1522. .2400)
FT /gene="C1"
FT CDS complement(1522. .2400)
FT /codon_start=1
FT /gene="C1"
FT /product="Rep"
FT /db_xref="GOA:O39521"
FT /db_xref="HSSP:P27260"
FT /db_xref="InterPro:IPR001146"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/Swiss-Prot:O39521"
FT /protein_id="ABE67103.1"
FT /translation="MPSASKNFRLQSKYVFLTYPKCSSQRDDLFQFLWEKLTPFLIFFL
FT GVASELHQDGTTHYHALLQLDKKPCIRDPSFFDFEGNHPNIQPARNSKQVLDYISKDGD
FT IKTRGDFRDHKVSPRKSDARWRTIIQTATSKEEYLDMIKEEFPHEWATKLQWLEYSANK
FT LFPPQPEPYVSPFTESDLRCHEDLHSWRETHLYHVSIDAYTYIHPVSYQQAQSDLEWMA
FT DLTRTMEGMESDTPASTSADQLVPERPPGLEVSDDTTIGTVPSISPTTMNTPPIISSTT
FT SPSSSSHCGSN"
XX
SQ Sequence 2566 BP; 689 A; 479 C; 644 G; 754 T; 0 other;
dq458791 Length: 2566 17-MAR-2013 Type: N Check: 2607 ..
1 accggcgtgg ccccccctta tcgcgagtgc tttagcacga gcggtccaga
51 tttaaagtag aaaatttccc gcccactagg gttaaaggtg ttcacactat
101 aaaagcatat acgatgtgat ggtatttgat ggagcgtata ttgtatcagg
151 tatttccgtt ggatacgaat tattcgtacg accctcctgc agttactgct
201 ccttcacagg gttcatctca aacggatttc ggtaaggttg ttgttgcttt
251 ggtggttatc ttggtcagcg taggtgtttt ctatctggcc tatagtttgt
301 tcttgaagga ctgcatcctt ctgttcaagg cgaagaagca gagaaccaca
351 accgaaatcg ggtttggaca aaccccggct agaaatcagg atcatccagg
401 accgtaggcg gggtgcatca tgtctactgt gacatggggt aagaagcgga
451 agcgaagcgg aggggattct aaggcgaaga gtaggggctc cagttcgtat
501 attccgagat ctgtctcatc caggagggaa tcgttgcagg ttgctacctt
551 ttcctggacg agttccggtt cgggtataaa gttttctccc ggtggtgctg
601 cgtatcttgt gagcaatttt ccacagggtg ccaacgataa ttgtcgtcac
651 accaacaaga ccgtgttata caaattcatg gccaagaata ctatatactt
701 ggactctagt cactatatga aagtgtttag agctccattt catttttggc
751 tggtgtacga caagtctcct ggtgctaatg ttcccagtac tggggatata
801 tttgagggac cttcgttgtt tcctcataat ccttggacgt ggactgtgtc
851 tagggctgcc tgccatcgtt ttgtggtgaa gaaaacgtgg tcatgcgtgg
901 tggagagcaa tggtatcgac ccaaccaaag gtcaaggagc tacttattat
951 gggcctgggc cttgtaatca ggttaagtcc tgtaataagt tctttaagag
1001 gttgggtgtg tccacagagt ggaaaaatag tgcaacgggt gatgttggtg
1051 atataaagga aggagccctt tacattgttg gtgctccttc ccaaaagtcc
1101 gatgtatatg taaatggtta tttccgagtg tacttcaagt cagtgggaaa
1151 tcaataaaat gattatttta tgaatatatt tcattgtgca agtagataga
1201 aattacatat gttacataac acacgaaata aacaaaaaaa gacaatccaa
1251 aaacaaacac cccaaaaaaa ataatcactt tagataaact cgtatgagga
1301 gaggcacgtt cagtgactcg acgattcccg agcaaaaaaa gtctccccgt
1351 cacacatgta gtgggtgacg caattatctt taaagtaatc cttctgttga
1401 cttgtcattg ataacatcca gtcttcgtca ggattgcaaa gaattataga
1451 agggatccca ccttttattt tcttcttttt tccatattta gggttgacag
1501 tgaaatcaga ctggcaacct attaattgct tccacaatgg gacgaacttg
1551 aaggggatgt cgtcgatgat attataggtg gcgtgttcat cgtagttggt
1601 gaaatcgatg gtaccgttcc aatagttgtg tcgtccgaga cttctagccc
1651 aggtggtctt tccggtacga gttggtccgc agatgtagag gctggggtgt
1701 cggattccat tccttccatt gtcctggtta aatcggccat ccattcaagg
1751 tcagattgag cttgttggta tgagacagga tgtatgtaag tataagcgtc
1801 tatgcttaca tggtatagat gggtttccct ccaggagtgt agatcttcgt
1851 ggcagcgaag atctgattct gtgaagggcg acacatacgg ttcaggttgt
1901 ggagggaata atttgttggc tgaatattcc agccattgaa gctttgttgc
1951 ccattcatga gggaattctt ccttgatcat gtcaagatat tcctccttag
2001 acgttgcagt ctggataata gttctccatc gtgcgtcaga tttgcgagga
2051 gagaccttat gatctcggaa atctcctctg gttttaatat ctccgtcctt
2101 tgatatgtaa tcaaggactt gtttagagtt tctagctggc tggatattag
2151 ggtgatttcc ttcaaaatcg aaaaaagaag gatccctaat acaaggtttt
2201 ttatcaagct ggagaagagc atgatagtgg gtagtgccat cttgatgaag
2251 ctcagaagca acaccaagga agaaaataag aaaaggtgtg agtttctccc
2301 agagaaactg gaataaatca tctctttgag atgagcactt gggataggta
2351 aggaaaacat atttagattg gagtctgaag ttcttactag cagaaggcat
2401 gttgttgtga ctccgagggg ttgcctcaaa ctctatctta taaccggcgt
2451 ggaggcatgg aggcaggggt attttggtca ttttaataga tagtggaaaa
2501 tgacgtggaa tttacttaaa gacgaagtct ttgcgacaag ggggggccca
2551 cgccgaattt aatatt