Sequence of DPV Trichomonas vaginalis virus 1
Trichomonas vaginalis virus 1 isolate Changchun capsid protein gene, complete cds; and RNA-dependent RNA polymerase gene, partial cds.
ACC No: DQ528812
Dated: 2011-10-24 | Length: 4291 | CRC: 1416171226
ID DQ528812; SV 1; linear; genomic RNA; STD; VRL; 4291 BP.
XX
AC DQ528812;
XX
DT 20-MAY-2006 (Rel. 87, Created)
DT 24-OCT-2011 (Rel. 110, Last updated, Version 3)
XX
DE Trichomonas vaginalis virus 1 isolate Changchun capsid protein gene,
DE complete cds; and RNA-dependent RNA polymerase gene, partial cds.
XX
KW .
XX
OS Trichomonas vaginalis virus 1
OC Viruses; dsRNA viruses; Totiviridae; Trichomonasvirus.
XX
RN [1]
RC Publication Status: Available-Online prior to print
RP 1-4291
RX PUBMED; 21861063.
RA Li W., Ding H., Zhang X., Cao L., Li J., Gong P., Li H., Zhang G., Li S.,
RA Zhang X.;
RT "The viral RNA-based transfection of enhanced green fluorescent protein
RT (EGFP) in the parasitic protozoan Trichomonas vaginalis";
RL Parasitol. Res. 0:0-0(2011).
XX
RN [2]
RP 1-4291
RA Zhao Y., Zhang X., Li J., Liu Q., Yin J., Gong P.;
RT "Identification and Characterization of Trichomonas vaginalis dsRNA Virus
RT in China";
RL Unpublished.
XX
RN [3]
RP 1-4291
RA Zhao Y., Zhang X., Li J., Liu Q., Yin J., Gong P.;
RT ;
RL Submitted (03-MAY-2006) to the INSDC.
RL College of Animal Science and Veterinary Medicine, Jilin University, 5333#
RL Xian Road, Changchun, Jilin 130062, China
XX
FH Key Location/Qualifiers
FH
FT source 1. .4291
FT /organism="Trichomonas vaginalis virus 1"
FT /host="Homo sapiens"
FT /isolate="Changchun"
FT /mol_type="genomic RNA"
FT /country="China"
FT /db_xref="taxon:674953"
FT CDS 1. .2037
FT /codon_start=1
FT /product="capsid protein"
FT /db_xref="UniProtKB/TrEMBL:Q1G0T7"
FT /protein_id="ABF57712.1"
FT /translation="MEASANGLSHDDNAIKSHNVGPSTLPGSDKQGREKHINSFNSFSN
FT DFFFNFLRMSTNTHISDSPGVSFIGKDGTPYSSATIPSAVGRLTHEVIASAVQLNISTS
FT NTLEVDYGFGQDVSRTTGTIPIPIFDGEKYKETARALAAIFNKKGMSVDVTSQTVQETL
FT KESDLTIATVAAGYYTALAARHELTKQVSVATHTIPYVTALSDTFTAAQNAQRSSHIIS
FT SCLRCPNAHNVQRDIGIGTVMWTNVSVESLAAPNMVVPNPNDISFFIPNKSLPSSWWCA
FT IWLLNAFLQSFIAPTHIHIFITPGETYHLAPFTDTDVYEAVRLLLAMSKTSRPIPESVE
FT SMLYAYGTQMIIQPHSLYTEGGLIRKMIFTVPHLPAHGYFVTNSEFSRYMNIAVPDNPR
FT SAKDFVIGVGTGLLQIVLAYQAALSCAGPIALHWHGNDITSEGMDRIADTYLEGRYFTI
FT PMAANVATNVAQYTIRVRADPEYRHTLDRILPRIFGPSTDTVFDFIESAITSSWVSIDA
FT RKRNGRARKFRTAFINRFHDPEFAYMFGITGNGIERMEGKVTSNIAQEVDYLMNGGDLR
FT NCPVLRTLKAAEREETVTFMCTQKVGSLYAIDGTVRVFKRYQTIDLAQLGWTSHGKVMK
FT PYAFRAPLMQGMTICNTAYTSTDIDIVTTVFGPLRNRVGSLFE"
FT CDS <2021. .4291
FT /codon_start=1
FT /product="RNA-dependent RNA polymerase"
FT /note="RDRP"
FT /db_xref="GOA:Q1G0T6"
FT /db_xref="InterPro:IPR001795"
FT /db_xref="UniProtKB/TrEMBL:Q1G0T6"
FT /protein_id="ABF57713.1"
FT /translation="DPFLSKAVRCGPIVPSVKHHFNIVWYSILKRKGKEYTFIPGYGWV
FT LQDDYLLSAVKMAGEGVLPPNQLPNDDDISFTLTKILLYDYISHFPEFRYTNPKILTQE
FT TELQLFPLKIDSAARTKANFYARTLWNDLATDKSAFKPGTPNDTVAGLLMWQQCALMWS
FT LPKLIINKTISGVCDALTERTSLTLLKRISDWLKQLGLAYSPIFRLFIELPTLLGRGAI
FT PGDSTLDIKHRLRYNPSITVDVPKDQLHDLIYRLLSRNLNGMKADSFEHHLEERLLWSK
FT SGSHFYPDDNIDQLLPPRPTRKEFLDIVTTDYIKECKPQVFIRQSRKLEHGKERFIYNC
FT DTISYVYFDFVLKLFESGWQDSEAILSPGDYTSEQLHAKISRYKYKAMLDYTDFNSQHT
FT IQSMRLIFETMKELLPPEATFALDWCIASFDNMQTSDGHKWVATLPSGHRATTFINTVL
FT NWCYTQMVGLKFDTFMCAGDDVILLSQEPISLAPILTSQFKFNPSKQSTGTRGEFLRKH
FT YTEEGVFAYPCRAIVSLVSGNWLSDSLRENTPILVPIQNGIDRLRSRAGLLGVPWSLGL
FT SELIEREAIPKEVGMALLNSHAAGPGLITRDYSSFTVTPTPPKISSTLEYTATRHGLQD
FT LSKHVPWKQLTVEECNKLGQQIKKMSHRHCSQAKITYKCVYEAFKPRKLPTVLSEASQS
FT ALSLVWWQAMLKEAMQDYSTKKIDAHMFVCNACTSSVSGDAFLRATSKMAGVLITSLIS
FT SSS"
XX
SQ Sequence 4291 BP; 1287 A; 1092 C; 825 G; 1087 T; 0 other;
dq528812 Length: 4291 24-OCT-2011 Type: N Check: 6387 ..
1 atggaggctt ctgctaatgg gttatcacat gatgataatg cgattaaatc
51 gcacaatgtt ggaccttcta ctcttccggg gtcagataag caaggaagag
101 aaaaacatat aaattctttt aattcttttt ctaatgattt cttttttaat
151 tttttacgta tgtctacaaa cacgcacatc tcagacagtc caggcgtctc
201 tttcatcgga aaagacggca caccttacag ctcagctacg atcccatcag
251 ccgtaggccg tcttactcat gaagttatag catcagccgt ccagctcaac
301 atctcaacaa gcaatacttt agaagtagat tacggttttg gtcaagatgt
351 atcaagaact acaggaacca tcccaatccc tatctttgat ggtgaaaaat
401 acaaagaaac agctcgcgcc ttagccgcaa tcttcaacaa gaaaggtatg
451 tcagttgatg ttacttcaca gacagtccaa gaaaccttga aagaatcaga
501 tcttactatt gctacagtcg ctgccggata ctacacagca ctggctgcac
551 gccacgagct cacgaaacaa gtaagcgtcg ccacccacac aatcccatac
601 gttactgcct tatccgatac attcacagca gcacaaaacg cacaacgttc
651 aagccatatt atatcttcct gcttacgttg tcccaacgct cacaatgtcc
701 agcgcgatat cggaattggt acagttatgt ggaccaatgt ttctgtcgag
751 agccttgctg ctccaaacat ggtagttcca aatccaaatg acatatcatt
801 cttcattcca aacaagagtc tcccttcttc ttggtggtgc gcgatctggc
851 ttctcaatgc tttccttcaa agcttcatcg ctcccacaca catccacatc
901 ttcatcacac caggagaaac ataccacctc gctccattca cggacactga
951 tgtttacgaa gctgtccgcc tcttgctcgc tatgtcgaaa acgtcgcgcc
1001 caataccaga gagcgtcgaa agcatgctct atgcttacgg tacacaaatg
1051 attatccagc cacattcact ttacacagaa ggcggcttaa tcagaaagat
1101 gatcttcaca gtcccacacc tcccagcaca tggttatttc gtcaccaatt
1151 ccgaattctc gagatacatg aacatcgctg tcccagataa cccccgttcg
1201 gcaaaagatt tcgtcatcgg tgttggcacc ggtcttttgc aaatcgtact
1251 cgcctaccag gccgcactca gctgcgccgg acctattgca cttcactggc
1301 atggtaacga catcacctct gaaggcatgg acagaattgc agatacttat
1351 ctcgaaggaa gatacttcac cattccaatg gcagccaacg tcgccaccaa
1401 cgtcgcccaa tacacaataa gggttcgcgc cgatcccgaa tatcggcata
1451 ccctcgaccg aatcttacca cgcatattcg gtccctcaac ggacacagtc
1501 ttcgatttca tcgaatcagc gatcacatca tcctgggtat caatcgatgc
1551 ccgcaagcgc aatggccgtg caaggaagtt cagaacggca ttcatcaacc
1601 gtttccacga tccagaattc gcatacatgt tcggtatcac aggtaacggt
1651 atcgaaagaa tggaaggcaa agttacttcg aatatcgccc aagaagttga
1701 ttacctcatg aacggtggcg atcttcgcaa ctgtccagtc cttcgtacgc
1751 tcaaggcggc agaaagagaa gaaacagtca cattcatgtg cacacagaaa
1801 gtcggctcgc tctacgccat cgatggcaca gtccgcgtat tcaagcgata
1851 ccaaacaatc gacctcgccc aacttggttg gacatcacac ggcaaggtga
1901 tgaaacctta cgctttccgc gcgccactca tgcaaggaat gaccatctgc
1951 aacacagcct acacatccac agacatcgac attgtcacaa cagtttttgg
2001 cccattacgc aatcgcgttg gatccctttt tgagtaaagc tgtacgttgt
2051 ggccctatag taccatccgt caaacatcat ttcaatattg tttggtattc
2101 tattctcaaa cgcaaaggta aagaatacac gtttatccca ggatacggat
2151 gggtactaca ggatgattat ttgttgagtg ccgtcaaaat ggctggtgaa
2201 ggtgttttac caccaaacca gttacctaat gacgatgata tttcatttac
2251 attaacaaaa attttacttt acgattacat atctcatttt ccagaattca
2301 gatacacaaa tccaaaaata ctaacacaag aaacagaatt acaacttttt
2351 ccattaaaaa tagattcagc tgctagaaca aaagcaaact tttacgctag
2401 aacactatgg aatgacttag ccaccgacaa atctgctttc aaaccaggaa
2451 ctcctaatga tacagtcgcc ggtttactga tgtggcaaca atgcgcttta
2501 atgtggtctc tacccaagtt aattatcaac aaaacaatta gcggtgtttg
2551 tgatgcatta accgaaagga cttcactcac gctactcaag cgtatctcag
2601 attggttgaa acaactcggg ttagcctact cacctatatt tcgcctcttc
2651 atcgagctcc ctacattatt aggacgagga gcaatcccag gcgatagcac
2701 actagatata aagcacagac tcagatataa tccatcaata accgtcgatg
2751 tcccaaagga tcaattacat gatttgatct acagactctt atcacgcaat
2801 ctcaatggta tgaaagctga cagtttcgaa caccacctag aagaacgctt
2851 gctctggtcg aagtcaggaa gccactttta tcccgatgac aatatcgatc
2901 aattacttcc cccacggccc accagaaagg agttcttaga cattgtaact
2951 acagactata tcaaagaatg caaaccccaa gtttttatca gacaatcacg
3001 taaactggag cacggcaagg aacggttcat ctacaattgc gatacgatct
3051 catatgtcta ttttgatttt gtcctgaagc tcttcgagtc aggatggcaa
3101 gatagcgaag caatactgtc gccaggagat tacacaagtg aacaactcca
3151 cgccaagatc tcccgttata agtacaaagc tatgttagac tacacagatt
3201 tcaactcgca acatacaatc cagagtatgc gattgatttt tgaaaccatg
3251 aaagagctac tcccacctga agcaaccttc gctcttgatt ggtgcatcgc
3301 ctcatttgat aacatgcaaa cgtctgatgg ccacaaatgg gttgcaaccc
3351 tcccaagcgg acaccgtgct acaacattta tcaataccgt cttaaattgg
3401 tgttacaccc aaatggttgg tctcaagttt gacactttca tgtgcgctgg
3451 tgacgacgtc atccttttat ctcaggaacc aatatcacta gcccctatcc
3501 ttacatcaca gttcaagttc aatcctagca aacaaagtac aggtacaaga
3551 ggtgaattct tacgcaagca ctacactgaa gaaggtgtct tcgcgtatcc
3601 gtgccgagca atagtaagct tagtaagtgg aaattggtta agcgattcat
3651 tacgagagaa caccccaatt ttagtcccaa tacagaatgg aattgacaga
3701 ctacgcagca gagcgggttt actcggagtt ccttggagtt taggtctctc
3751 agagctcatt gagagagagg ctatcccaaa ggaagtcggc atggcactgc
3801 taaattcaca cgcggcagga ccgggactaa tcactcgtga ctacagttct
3851 tttacagtta caccgactcc acctaaaata agcagtacat tggaatacac
3901 tgcgacacgt catggtcttc aagacttatc caaacatgta ccgtggaagc
3951 agcttacagt cgaagaatgc aataaattag gacagcaaat taagaaaatg
4001 agccacaggc attgtagcca ggcgaagata acctacaaat gtgtctacga
4051 agcttttaag cctcgtaaac ttcctacggt gttatccgaa gccagccagt
4101 cagcgttgtc gctggtgtgg tggcaagcaa tgcttaagga agcaatgcag
4151 gactattcta caaagaagat agatgctcac atgtttgttt gtaacgcatg
4201 tacaagctcc gttagcgggg atgcgttttt acgagcaaca tccaagatgg
4251 ccggtgtctt aatcactagc ttgatttctt cttcttcata a