Sequence of DPV Trichomonas vaginalis virus 1
Trichomonas vaginalis virus 1 isolate Changchun capsid protein gene, complete cds; and RNA-dependent RNA polymerase gene, partial cds.
ACC No: DQ528812
Dated: 2011-10-24 | Length: 4291 | CRC: 1416171226
ID DQ528812; SV 1; linear; genomic RNA; STD; VRL; 4291 BP. XX AC DQ528812; XX DT 20-MAY-2006 (Rel. 87, Created) DT 24-OCT-2011 (Rel. 110, Last updated, Version 3) XX DE Trichomonas vaginalis virus 1 isolate Changchun capsid protein gene, DE complete cds; and RNA-dependent RNA polymerase gene, partial cds. XX KW . XX OS Trichomonas vaginalis virus 1 OC Viruses; dsRNA viruses; Totiviridae; Trichomonasvirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-4291 RX PUBMED; 21861063. RA Li W., Ding H., Zhang X., Cao L., Li J., Gong P., Li H., Zhang G., Li S., RA Zhang X.; RT "The viral RNA-based transfection of enhanced green fluorescent protein RT (EGFP) in the parasitic protozoan Trichomonas vaginalis"; RL Parasitol. Res. 0:0-0(2011). XX RN [2] RP 1-4291 RA Zhao Y., Zhang X., Li J., Liu Q., Yin J., Gong P.; RT "Identification and Characterization of Trichomonas vaginalis dsRNA Virus RT in China"; RL Unpublished. XX RN [3] RP 1-4291 RA Zhao Y., Zhang X., Li J., Liu Q., Yin J., Gong P.; RT ; RL Submitted (03-MAY-2006) to the INSDC. RL College of Animal Science and Veterinary Medicine, Jilin University, 5333# RL Xian Road, Changchun, Jilin 130062, China XX FH Key Location/Qualifiers FH FT source 1. .4291 FT /organism="Trichomonas vaginalis virus 1" FT /host="Homo sapiens" FT /isolate="Changchun" FT /mol_type="genomic RNA" FT /country="China" FT /db_xref="taxon:674953" FT CDS 1. .2037 FT /codon_start=1 FT /product="capsid protein" FT /db_xref="UniProtKB/TrEMBL:Q1G0T7" FT /protein_id="ABF57712.1" FT /translation="MEASANGLSHDDNAIKSHNVGPSTLPGSDKQGREKHINSFNSFSN FT DFFFNFLRMSTNTHISDSPGVSFIGKDGTPYSSATIPSAVGRLTHEVIASAVQLNISTS FT NTLEVDYGFGQDVSRTTGTIPIPIFDGEKYKETARALAAIFNKKGMSVDVTSQTVQETL FT KESDLTIATVAAGYYTALAARHELTKQVSVATHTIPYVTALSDTFTAAQNAQRSSHIIS FT SCLRCPNAHNVQRDIGIGTVMWTNVSVESLAAPNMVVPNPNDISFFIPNKSLPSSWWCA FT IWLLNAFLQSFIAPTHIHIFITPGETYHLAPFTDTDVYEAVRLLLAMSKTSRPIPESVE FT SMLYAYGTQMIIQPHSLYTEGGLIRKMIFTVPHLPAHGYFVTNSEFSRYMNIAVPDNPR FT SAKDFVIGVGTGLLQIVLAYQAALSCAGPIALHWHGNDITSEGMDRIADTYLEGRYFTI FT PMAANVATNVAQYTIRVRADPEYRHTLDRILPRIFGPSTDTVFDFIESAITSSWVSIDA FT RKRNGRARKFRTAFINRFHDPEFAYMFGITGNGIERMEGKVTSNIAQEVDYLMNGGDLR FT NCPVLRTLKAAEREETVTFMCTQKVGSLYAIDGTVRVFKRYQTIDLAQLGWTSHGKVMK FT PYAFRAPLMQGMTICNTAYTSTDIDIVTTVFGPLRNRVGSLFE" FT CDS <2021. .4291 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="RDRP" FT /db_xref="GOA:Q1G0T6" FT /db_xref="InterPro:IPR001795" FT /db_xref="UniProtKB/TrEMBL:Q1G0T6" FT /protein_id="ABF57713.1" FT /translation="DPFLSKAVRCGPIVPSVKHHFNIVWYSILKRKGKEYTFIPGYGWV FT LQDDYLLSAVKMAGEGVLPPNQLPNDDDISFTLTKILLYDYISHFPEFRYTNPKILTQE FT TELQLFPLKIDSAARTKANFYARTLWNDLATDKSAFKPGTPNDTVAGLLMWQQCALMWS FT LPKLIINKTISGVCDALTERTSLTLLKRISDWLKQLGLAYSPIFRLFIELPTLLGRGAI FT PGDSTLDIKHRLRYNPSITVDVPKDQLHDLIYRLLSRNLNGMKADSFEHHLEERLLWSK FT SGSHFYPDDNIDQLLPPRPTRKEFLDIVTTDYIKECKPQVFIRQSRKLEHGKERFIYNC FT DTISYVYFDFVLKLFESGWQDSEAILSPGDYTSEQLHAKISRYKYKAMLDYTDFNSQHT FT IQSMRLIFETMKELLPPEATFALDWCIASFDNMQTSDGHKWVATLPSGHRATTFINTVL FT NWCYTQMVGLKFDTFMCAGDDVILLSQEPISLAPILTSQFKFNPSKQSTGTRGEFLRKH FT YTEEGVFAYPCRAIVSLVSGNWLSDSLRENTPILVPIQNGIDRLRSRAGLLGVPWSLGL FT SELIEREAIPKEVGMALLNSHAAGPGLITRDYSSFTVTPTPPKISSTLEYTATRHGLQD FT LSKHVPWKQLTVEECNKLGQQIKKMSHRHCSQAKITYKCVYEAFKPRKLPTVLSEASQS FT ALSLVWWQAMLKEAMQDYSTKKIDAHMFVCNACTSSVSGDAFLRATSKMAGVLITSLIS FT SSS" XX SQ Sequence 4291 BP; 1287 A; 1092 C; 825 G; 1087 T; 0 other; dq528812 Length: 4291 24-OCT-2011 Type: N Check: 6387 .. 1 atggaggctt ctgctaatgg gttatcacat gatgataatg cgattaaatc 51 gcacaatgtt ggaccttcta ctcttccggg gtcagataag caaggaagag 101 aaaaacatat aaattctttt aattcttttt ctaatgattt cttttttaat 151 tttttacgta tgtctacaaa cacgcacatc tcagacagtc caggcgtctc 201 tttcatcgga aaagacggca caccttacag ctcagctacg atcccatcag 251 ccgtaggccg tcttactcat gaagttatag catcagccgt ccagctcaac 301 atctcaacaa gcaatacttt agaagtagat tacggttttg gtcaagatgt 351 atcaagaact acaggaacca tcccaatccc tatctttgat ggtgaaaaat 401 acaaagaaac agctcgcgcc ttagccgcaa tcttcaacaa gaaaggtatg 451 tcagttgatg ttacttcaca gacagtccaa gaaaccttga aagaatcaga 501 tcttactatt gctacagtcg ctgccggata ctacacagca ctggctgcac 551 gccacgagct cacgaaacaa gtaagcgtcg ccacccacac aatcccatac 601 gttactgcct tatccgatac attcacagca gcacaaaacg cacaacgttc 651 aagccatatt atatcttcct gcttacgttg tcccaacgct cacaatgtcc 701 agcgcgatat cggaattggt acagttatgt ggaccaatgt ttctgtcgag 751 agccttgctg ctccaaacat ggtagttcca aatccaaatg acatatcatt 801 cttcattcca aacaagagtc tcccttcttc ttggtggtgc gcgatctggc 851 ttctcaatgc tttccttcaa agcttcatcg ctcccacaca catccacatc 901 ttcatcacac caggagaaac ataccacctc gctccattca cggacactga 951 tgtttacgaa gctgtccgcc tcttgctcgc tatgtcgaaa acgtcgcgcc 1001 caataccaga gagcgtcgaa agcatgctct atgcttacgg tacacaaatg 1051 attatccagc cacattcact ttacacagaa ggcggcttaa tcagaaagat 1101 gatcttcaca gtcccacacc tcccagcaca tggttatttc gtcaccaatt 1151 ccgaattctc gagatacatg aacatcgctg tcccagataa cccccgttcg 1201 gcaaaagatt tcgtcatcgg tgttggcacc ggtcttttgc aaatcgtact 1251 cgcctaccag gccgcactca gctgcgccgg acctattgca cttcactggc 1301 atggtaacga catcacctct gaaggcatgg acagaattgc agatacttat 1351 ctcgaaggaa gatacttcac cattccaatg gcagccaacg tcgccaccaa 1401 cgtcgcccaa tacacaataa gggttcgcgc cgatcccgaa tatcggcata 1451 ccctcgaccg aatcttacca cgcatattcg gtccctcaac ggacacagtc 1501 ttcgatttca tcgaatcagc gatcacatca tcctgggtat caatcgatgc 1551 ccgcaagcgc aatggccgtg caaggaagtt cagaacggca ttcatcaacc 1601 gtttccacga tccagaattc gcatacatgt tcggtatcac aggtaacggt 1651 atcgaaagaa tggaaggcaa agttacttcg aatatcgccc aagaagttga 1701 ttacctcatg aacggtggcg atcttcgcaa ctgtccagtc cttcgtacgc 1751 tcaaggcggc agaaagagaa gaaacagtca cattcatgtg cacacagaaa 1801 gtcggctcgc tctacgccat cgatggcaca gtccgcgtat tcaagcgata 1851 ccaaacaatc gacctcgccc aacttggttg gacatcacac ggcaaggtga 1901 tgaaacctta cgctttccgc gcgccactca tgcaaggaat gaccatctgc 1951 aacacagcct acacatccac agacatcgac attgtcacaa cagtttttgg 2001 cccattacgc aatcgcgttg gatccctttt tgagtaaagc tgtacgttgt 2051 ggccctatag taccatccgt caaacatcat ttcaatattg tttggtattc 2101 tattctcaaa cgcaaaggta aagaatacac gtttatccca ggatacggat 2151 gggtactaca ggatgattat ttgttgagtg ccgtcaaaat ggctggtgaa 2201 ggtgttttac caccaaacca gttacctaat gacgatgata tttcatttac 2251 attaacaaaa attttacttt acgattacat atctcatttt ccagaattca 2301 gatacacaaa tccaaaaata ctaacacaag aaacagaatt acaacttttt 2351 ccattaaaaa tagattcagc tgctagaaca aaagcaaact tttacgctag 2401 aacactatgg aatgacttag ccaccgacaa atctgctttc aaaccaggaa 2451 ctcctaatga tacagtcgcc ggtttactga tgtggcaaca atgcgcttta 2501 atgtggtctc tacccaagtt aattatcaac aaaacaatta gcggtgtttg 2551 tgatgcatta accgaaagga cttcactcac gctactcaag cgtatctcag 2601 attggttgaa acaactcggg ttagcctact cacctatatt tcgcctcttc 2651 atcgagctcc ctacattatt aggacgagga gcaatcccag gcgatagcac 2701 actagatata aagcacagac tcagatataa tccatcaata accgtcgatg 2751 tcccaaagga tcaattacat gatttgatct acagactctt atcacgcaat 2801 ctcaatggta tgaaagctga cagtttcgaa caccacctag aagaacgctt 2851 gctctggtcg aagtcaggaa gccactttta tcccgatgac aatatcgatc 2901 aattacttcc cccacggccc accagaaagg agttcttaga cattgtaact 2951 acagactata tcaaagaatg caaaccccaa gtttttatca gacaatcacg 3001 taaactggag cacggcaagg aacggttcat ctacaattgc gatacgatct 3051 catatgtcta ttttgatttt gtcctgaagc tcttcgagtc aggatggcaa 3101 gatagcgaag caatactgtc gccaggagat tacacaagtg aacaactcca 3151 cgccaagatc tcccgttata agtacaaagc tatgttagac tacacagatt 3201 tcaactcgca acatacaatc cagagtatgc gattgatttt tgaaaccatg 3251 aaagagctac tcccacctga agcaaccttc gctcttgatt ggtgcatcgc 3301 ctcatttgat aacatgcaaa cgtctgatgg ccacaaatgg gttgcaaccc 3351 tcccaagcgg acaccgtgct acaacattta tcaataccgt cttaaattgg 3401 tgttacaccc aaatggttgg tctcaagttt gacactttca tgtgcgctgg 3451 tgacgacgtc atccttttat ctcaggaacc aatatcacta gcccctatcc 3501 ttacatcaca gttcaagttc aatcctagca aacaaagtac aggtacaaga 3551 ggtgaattct tacgcaagca ctacactgaa gaaggtgtct tcgcgtatcc 3601 gtgccgagca atagtaagct tagtaagtgg aaattggtta agcgattcat 3651 tacgagagaa caccccaatt ttagtcccaa tacagaatgg aattgacaga 3701 ctacgcagca gagcgggttt actcggagtt ccttggagtt taggtctctc 3751 agagctcatt gagagagagg ctatcccaaa ggaagtcggc atggcactgc 3801 taaattcaca cgcggcagga ccgggactaa tcactcgtga ctacagttct 3851 tttacagtta caccgactcc acctaaaata agcagtacat tggaatacac 3901 tgcgacacgt catggtcttc aagacttatc caaacatgta ccgtggaagc 3951 agcttacagt cgaagaatgc aataaattag gacagcaaat taagaaaatg 4001 agccacaggc attgtagcca ggcgaagata acctacaaat gtgtctacga 4051 agcttttaag cctcgtaaac ttcctacggt gttatccgaa gccagccagt 4101 cagcgttgtc gctggtgtgg tggcaagcaa tgcttaagga agcaatgcag 4151 gactattcta caaagaagat agatgctcac atgtttgttt gtaacgcatg 4201 tacaagctcc gttagcgggg atgcgttttt acgagcaaca tccaagatgg 4251 ccggtgtctt aatcactagc ttgatttctt cttcttcata a