Sequence of DPV Tomato yellow leaf curl Vietnam betasatellite
Tomato yellow leaf curl Vietnam virus satellite DNA beta, complete sequence.
ACC No: DQ641714
Dated: 2007-12-21 | Length: 1356 | CRC: 2097504252
ID DQ641714; SV 1; circular; genomic DNA; STD; VRL; 1356 BP.
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AC DQ641714;
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DT 03-MAY-2007 (Rel. 91, Created)
DT 21-DEC-2007 (Rel. 94, Last updated, Version 3)
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DE Tomato yellow leaf curl Vietnam virus satellite DNA beta, complete
DE sequence.
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KW .
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OS Tomato yellow leaf curl Vietnam virus satellite DNA beta
OC Viruses; Satellites; Satellite Nucleic Acids;
OC Single stranded DNA satellites;
OC Begomovirus-associated DNA beta-like sequences.
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RN [1]
RP 1-1356
RX PUBMED; 18089756.
RA Ha C., Coombs S., Revill P., Harding R., Vu M., Dale J.;
RT "Molecular characterization of begomoviruses and DNA satellites from
RT Vietnam: additional evidence that the New World geminiviruses were present
RT in the Old World prior to continental separation";
RL J. Gen. Virol. 89(PT 1):312-326(2008).
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RN [2]
RP 1-1356
RA Ha C.V., Coombs S., Revill P.A., Harding R.M., Vu M.T., Dale J.L.;
RT ;
RL Submitted (18-MAY-2006) to the EMBL/GenBank/DDBJ databases.
RL Institute of Health and Biomedical Innovation, Queensland University of
RL Technology, 2 George Street, Brisbane, Queensland 4001, Australia
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FH Key Location/Qualifiers
FH
FT source 1. .1356
FT /organism="Tomato yellow leaf curl Vietnam virus satellite
FT DNA beta"
FT /specific_host="tomato (Lycopersicon esculentum,
FT Solanaceae); crop"
FT /mol_type="genomic DNA"
FT /country="Viet Nam:Hanoi"
FT /db_xref="taxon:447604"
FT gene complement(230. .586)
FT /gene="C1"
FT CDS complement(230. .586)
FT /codon_start=1
FT /gene="C1"
FT /product="C1 protein"
FT /db_xref="UniProtKB/TrEMBL:A5H1F8"
FT /protein_id="ABG26124.1"
FT /translation="MTIKYNNKKGMEFIINVRLNEDSSILVLIELISTKSPALAKKKFM
FT IPYRHSGIIPPFNFNGLEEGIKNLLDVMYKESTITEFKQEDMIETIDIMMMHDAPVDDI
FT NIGDEYDVFMNTNV"
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SQ Sequence 1356 BP; 467 A; 235 C; 256 G; 398 T; 0 other;
dq641714 Length: 1356 21-DEC-2007 Type: N Check: 7762 ..
1 accggtggcg agcggggatt ttgctccgaa agtgggtccc actactcaga
51 ggaaagagaa attgggcttc ggttatgcaa ttgggccctt aaagtatagg
101 gtttttacaa aatggaccct ggatattggg cttaaattca ttaaacatca
151 tgggcttgaa gaaatccatt tattcagcat atttattata catacgtgta
201 aatacgtatt tatacatgta aatacgtatt tatacattgg tattcataaa
251 tacatcatat tcatctccta tattaatatc atcaacaggt gcgtcgtgca
301 tcatcatgat atcaatagtc tctatcatat cctcttgctt gaattctgtt
351 atggtcgatt ctttgtacat cacatctagc aagtttttaa tcccttcttc
401 caagccgttg aagttgaaag gtggaatgat tccactgtgc ctgtatggga
451 tcatgaattt cttcttggct agtgctggtg acttggttga gataagttca
501 atcaagacaa ggattgaact atcttcattt agccttacat tgataatgaa
551 ttccatgccc ttcttgttgt tgtacttgat cgtcattttt atgtgtgttc
601 aaccatacat gagtctttct gggttaaata tggatttaga tatttgattc
651 atggacgtga atcaaatacg tgttttgttg atgctcatat agttataagt
701 ggatgtatca ttcatgatag tgacctaaat gttaacatga ttgtgatgtt
751 aaaaatatct actaatctag attagtagat aatcagataa aaagaagaag
801 aataatcctc gggattaaga aaaaaaaaag aaaaaagaac aaataaaaaa
851 aaaacatgag tccaagcaca aacaaatatc tattaagaaa aaaaagggag
901 cgcagcggaa acaaaaaaca aacaaaactg aaacgcatta aaataaatca
951 aaataaaaaa tagaagaaga aaacaatata catcaaaaaa aaaaagaaaa
1001 agaaaagaaa tcactcaatt ttttactgcc cagtaaaaaa taaattactt
1051 tcacctcgga ggtaaataat tgagtcccca ataggtaaat gaggcaccga
1101 tatatcggtg cctctattgg tgactaataa agtaattgac taaactaccc
1151 ctgcttttat gttattcagg cgcgttggag tgcgctgaaa aagtgaacat
1201 tctctctcct aaactcgtcg gagaagacga ttgaggcact tcccggcatc
1251 aatttgcgac acgcgcggcg gtgtgtaccc ctgggagggt agaaaccact
1301 acgctacgca gcagccttag ctacgccgga gcttagctcg ccaccgttat
1351 aatatt